Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36703 * 126.60046 * 2 1 4 4 C 1.47365 * 125.77982 * 0.02562 * 3 2 1 5 5 O 1.21516 * 120.00298 * 0.31832 * 4 3 2 6 6 O 1.34755 * 120.00241 * 180.32180 * 4 3 2 7 7 C 1.45198 * 117.00525 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46978 * 330.00074 * 7 6 4 9 9 C 1.53001 * 109.47009 * 89.99851 * 7 6 4 10 10 C 1.50699 * 109.47621 * 209.99926 * 7 6 4 11 11 H 1.08001 * 119.99550 * 359.97438 * 10 7 6 12 12 C 1.37869 * 120.00458 * 180.02562 * 10 7 6 13 13 N 1.31522 * 119.99994 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00547 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.46731 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47356 * 119.99702 * 14 12 10 17 17 H 1.48502 * 109.47388 * 239.99929 * 14 12 10 18 18 N 1.34453 * 108.44236 * 180.31045 * 3 2 1 19 19 N 1.28751 * 109.56366 * 359.73689 * 18 3 2 20 20 N 1.35019 * 126.60613 * 179.87155 * 2 1 3 21 21 C 1.40274 * 126.60768 * 359.96263 * 20 2 1 22 22 C 1.38845 * 120.02441 * 324.94028 * 21 20 2 23 23 C 1.38115 * 119.99928 * 180.25490 * 22 21 20 24 24 C 1.38443 * 120.06782 * 359.79067 * 23 22 21 25 25 F 1.35101 * 119.97013 * 179.97438 * 24 23 22 26 26 C 1.38676 * 120.05965 * 359.96058 * 24 23 22 27 27 F 1.35100 * 120.00256 * 180.02562 * 26 24 23 28 28 C 1.38316 * 119.99634 * 0.02562 * 26 24 23 29 29 H 1.09003 * 109.46710 * 270.12636 * 1 2 3 30 30 H 1.08991 * 109.47355 * 30.12909 * 1 2 3 31 31 H 1.09002 * 109.46826 * 150.13369 * 1 2 3 32 32 H 1.08999 * 109.47069 * 60.00279 * 9 7 6 33 33 H 1.08999 * 109.46936 * 180.02562 * 9 7 6 34 34 H 1.09006 * 109.47025 * 300.00294 * 9 7 6 35 35 H 0.96992 * 120.00465 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00198 * 0.02844 * 22 21 20 37 37 H 1.08000 * 119.96481 * 179.77019 * 23 22 21 38 38 H 1.08002 * 120.03023 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3221 1.0975 0.0000 4 6 1.8761 2.5020 0.0005 5 8 0.6892 2.7626 0.0069 6 8 2.7843 3.4974 -0.0061 7 6 2.2730 4.8564 -0.0057 8 1 1.3094 4.8822 -0.5144 9 6 2.1012 5.3362 1.4369 10 6 3.2439 5.7587 -0.7229 11 1 4.1544 5.3515 -1.1371 12 6 2.9704 7.1041 -0.8492 13 7 1.8618 7.6000 -0.3443 14 14 4.1734 8.2224 -1.7388 15 1 5.3340 7.4251 -2.2108 16 1 3.4977 8.8506 -2.9024 17 1 4.6453 9.2805 -0.8099 18 7 3.5997 0.6785 -0.0069 19 7 3.6313 -0.6087 -0.0056 20 7 2.3122 -1.0839 0.0024 21 6 1.9071 -2.4268 0.0062 22 6 0.7647 -2.8060 0.6983 23 6 0.3692 -4.1293 0.7060 24 6 1.1084 -5.0781 0.0205 25 9 0.7201 -6.3721 0.0298 26 6 2.2469 -4.7015 -0.6759 27 9 2.9671 -5.6283 -1.3449 28 6 2.6452 -3.3770 -0.6856 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8887 -0.5158 31 1 -0.3633 -0.8912 -0.5118 32 1 3.0649 5.3105 1.9456 33 1 1.7170 6.3563 1.4372 34 1 1.3989 4.6836 1.9557 35 1 1.6695 8.5466 -0.4328 36 1 0.1874 -2.0668 1.2337 37 1 -0.5174 -4.4241 1.2477 38 1 3.5320 -3.0831 -1.2275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842717599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = -64.485288 kcal Electronic energy + Delta-G solvation = -27759.728159 eV Core-core repulsion = 23240.412949 eV Total energy + Delta-G solvation = -4519.315209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.69228 -49.76431 -43.82187 -41.10804 -40.29348 -37.65788 -36.00177 -35.29282 -33.85843 -32.18055 -31.70852 -30.66515 -29.20521 -27.44001 -25.66215 -25.44102 -24.36715 -23.20670 -22.23517 -21.49588 -19.97917 -19.06647 -18.80362 -18.47692 -18.15740 -17.66234 -17.61094 -17.43035 -16.89303 -16.48688 -16.31921 -16.15904 -15.79631 -15.57672 -15.25361 -14.95848 -14.77876 -14.40555 -14.19042 -14.16655 -13.95755 -13.71903 -13.49218 -13.28246 -13.15566 -12.97649 -12.80681 -12.75597 -12.40628 -12.37576 -12.15484 -11.98823 -11.62287 -11.54746 -10.98123 -10.61092 -10.53144 -10.38228 -9.83375 -8.28248 -6.43708 -0.94522 -0.34845 0.08186 0.29975 0.57394 1.42309 1.43041 1.56360 1.79741 1.86956 1.99994 2.40236 2.48771 2.85997 3.00362 3.02466 3.21036 3.29981 3.52736 3.54421 3.56931 3.75576 4.13784 4.29312 4.42765 4.52477 4.53841 4.59722 4.61272 4.66431 4.81484 4.84274 4.84503 4.97072 5.14310 5.25029 5.48004 5.49987 5.63619 5.87218 6.05004 6.49584 6.62696 6.90819 7.26967 8.79618 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.002202 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.595156 B =12710.962221 C =13313.093107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.105 4.105 4 C 0.541 3.459 5 O -0.521 6.521 6 O -0.352 6.352 7 C 0.218 3.782 8 H 0.021 0.979 9 C -0.142 4.142 10 C -0.549 4.549 11 H 0.060 0.940 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 0.980 3.020 15 H -0.269 1.269 16 H -0.273 1.273 17 H -0.270 1.270 18 N -0.197 5.197 19 N -0.072 5.072 20 N -0.312 5.312 21 C 0.132 3.868 22 C -0.082 4.082 23 C -0.079 4.079 24 C 0.080 3.920 25 F -0.125 7.125 26 C 0.078 3.922 27 F -0.129 7.129 28 C -0.111 4.111 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.031 0.969 35 H 0.272 0.728 36 H 0.184 0.816 37 H 0.203 0.797 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -26.790 2.925 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.241 4.241 4 C 0.385 3.615 5 O -0.411 6.411 6 O -0.268 6.268 7 C 0.165 3.835 8 H 0.038 0.962 9 C -0.200 4.200 10 C -0.587 4.587 11 H 0.079 0.921 12 C -0.180 4.180 13 N -0.550 5.550 14 Si 0.803 3.197 15 H -0.194 1.194 16 H -0.198 1.198 17 H -0.195 1.195 18 N -0.071 5.071 19 N -0.050 5.050 20 N -0.092 5.092 21 C 0.041 3.959 22 C -0.102 4.102 23 C -0.098 4.098 24 C 0.059 3.941 25 F -0.103 7.103 26 C 0.057 3.943 27 F -0.108 7.108 28 C -0.132 4.132 29 H 0.148 0.852 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.220 0.780 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.474 -26.909 2.911 27.829 hybrid contribution 0.142 0.696 -0.703 0.999 sum -6.331 -26.212 2.209 27.056 Atomic orbital electron populations 1.21238 0.80773 1.07113 1.07215 1.22406 0.97676 0.84013 0.93343 1.20197 0.89728 0.92715 1.21449 1.19705 0.84115 0.85106 0.72618 1.90745 1.17543 1.84700 1.48102 1.86633 1.40002 1.18336 1.81783 1.20483 0.95013 0.72721 0.95251 0.96167 1.21996 0.99379 1.02861 0.95772 1.21291 1.06751 0.93260 1.37361 0.92146 1.25738 0.97587 0.98673 0.95971 1.69992 1.25288 1.14664 1.45093 0.85181 0.78341 0.77947 0.78213 1.19365 1.19779 1.19508 1.74784 1.19858 1.04050 1.08425 1.82107 0.96322 1.02798 1.23762 1.47535 1.06328 1.05333 1.49979 1.17439 0.97973 0.78525 1.01982 1.21448 0.94138 0.97777 0.96825 1.21327 1.01061 0.89571 0.97824 1.17990 0.94707 0.80334 1.01075 1.91577 1.90183 1.33757 1.94825 1.17349 0.92479 0.86355 0.98134 1.91563 1.76731 1.64314 1.78163 1.20762 1.02009 0.90140 1.00292 0.85169 0.88316 0.86027 0.94094 0.89653 0.95026 0.91863 0.79914 0.78027 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.05 71.24 0.57 -0.98 16 2 C 0.16 3.93 6.85 41.71 0.29 4.22 16 3 C -0.10 -3.74 7.02 40.79 0.29 -3.45 16 4 C 0.54 23.61 7.93 70.22 0.56 24.17 16 5 O -0.52 -22.79 13.99 19.78 0.28 -22.52 16 6 O -0.35 -18.11 9.87 -56.66 -0.56 -18.67 16 7 C 0.22 12.11 2.56 29.85 0.08 12.18 16 8 H 0.02 1.23 7.16 -2.39 -0.02 1.21 16 9 C -0.14 -7.32 9.33 71.98 0.67 -6.65 16 10 C -0.55 -31.96 8.90 25.60 0.23 -31.73 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.02 1.13 5.30 84.65 0.45 1.58 16 13 N -0.91 -51.84 11.32 21.45 0.24 -51.59 16 14 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 N -0.20 -7.40 12.39 -50.02 -0.62 -8.02 16 19 N -0.07 -2.22 13.57 37.02 0.50 -1.71 16 20 N -0.31 -7.12 3.75 -175.12 -0.66 -7.77 16 21 C 0.13 1.95 6.32 38.07 0.24 2.19 16 22 C -0.08 -0.54 8.36 22.39 0.19 -0.35 16 23 C -0.08 -0.32 10.02 22.29 0.22 -0.10 16 24 C 0.08 0.82 7.31 22.42 0.16 0.98 16 25 F -0.13 -1.58 17.18 44.97 0.77 -0.80 16 26 C 0.08 1.10 7.30 22.39 0.16 1.26 16 27 F -0.13 -2.27 17.18 44.97 0.77 -1.50 16 28 C -0.11 -1.70 9.76 22.42 0.22 -1.48 16 29 H 0.13 1.18 7.80 -2.39 -0.02 1.17 16 30 H 0.10 2.02 6.45 -2.39 -0.02 2.01 16 31 H 0.12 0.82 6.98 -2.39 -0.02 0.80 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 4.65 6.07 -2.39 -0.01 4.63 16 34 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.18 0.30 6.19 -2.91 -0.02 0.28 16 37 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -73.73 344.28 8.22 -65.51 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: 1.14 Total: -0.38 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.32 Total: 1.84 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.53 Total: -69.10 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.28 Total: -41.18 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 1.55 Total: -2.31 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.73 8.22 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842717599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.025 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds