Wall clock time and date at job start Tue Mar 31 2020 20:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34226 * 117.00250 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00436 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.49191 * 300.06591 * 6 4 3 8 8 C 1.53626 * 109.43034 * 60.28789 * 6 4 3 9 9 N 1.46929 * 108.54034 * 174.72876 * 8 6 4 10 10 C 1.34771 * 120.62695 * 126.37129 * 9 8 6 11 11 O 1.21281 * 120.00398 * 359.71890 * 10 9 8 12 12 C 1.50702 * 119.99698 * 179.71665 * 10 9 8 13 13 S 1.81002 * 109.47279 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99786 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00453 * 359.72125 * 14 13 12 16 16 C 1.38805 * 119.99580 * 180.02562 * 14 13 12 17 17 N 1.31633 * 120.00030 * 359.71792 * 16 14 13 18 18 Si 1.86798 * 119.99665 * 179.72429 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 119.99872 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99431 * 18 16 14 22 22 C 1.46923 * 118.73408 * 306.09114 * 9 8 6 23 23 C 1.53187 * 108.77973 * 53.86414 * 22 9 8 24 24 C 1.53034 * 109.31157 * 305.36491 * 23 22 9 25 25 F 1.39899 * 109.46149 * 181.38141 * 24 23 22 26 26 F 1.39904 * 109.46034 * 301.33875 * 24 23 22 27 27 H 1.09001 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47242 * 299.99779 * 1 2 3 29 29 H 1.08996 * 109.47063 * 59.99879 * 1 2 3 30 30 H 1.09000 * 109.46757 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.47063 * 120.00121 * 2 1 3 32 32 H 1.08998 * 109.74051 * 54.98876 * 8 6 4 33 33 H 1.09001 * 109.66586 * 294.41956 * 8 6 4 34 34 H 1.09002 * 109.47315 * 59.99436 * 12 10 9 35 35 H 1.09004 * 109.46949 * 300.00089 * 12 10 9 36 36 H 0.97000 * 119.99668 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.58049 * 173.65152 * 22 9 8 38 38 H 1.09007 * 109.58879 * 294.07388 * 22 9 8 39 39 H 1.09008 * 109.49486 * 65.31208 * 23 22 9 40 40 H 1.08994 * 109.50258 * 185.40578 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5836 3.4708 -0.8888 8 6 3.4532 3.6834 1.2590 9 7 4.1249 4.9893 1.3047 10 6 3.4101 6.1252 1.4283 11 8 2.2003 6.0758 1.4977 12 6 4.1141 7.4566 1.4802 13 16 2.8907 8.7800 1.6469 14 6 3.9585 10.1812 1.6812 15 1 5.0278 10.0472 1.6120 16 6 3.4255 11.4570 1.8035 17 7 2.1221 11.6205 1.8884 18 14 4.5579 12.9420 1.8476 19 1 5.9687 12.4921 1.7365 20 1 4.2350 13.8446 0.7136 21 1 4.3702 13.6697 3.1285 22 6 5.5910 5.0329 1.2195 23 6 6.0350 4.2714 -0.0333 24 6 5.4491 2.8580 -0.0008 25 9 5.8783 2.1494 -1.1280 26 9 5.8822 2.2004 1.1556 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7139 3.1070 2.1466 33 1 2.3736 3.8290 1.2194 34 1 4.6839 7.6024 0.5624 35 1 4.7906 7.4768 2.3347 36 1 1.7497 12.5121 1.9735 37 1 5.9225 6.0692 1.1539 38 1 6.0226 4.5643 2.1041 39 1 5.6781 4.7928 -0.9216 40 1 7.1232 4.2137 -0.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870924669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:23 Heat of formation + Delta-G solvation = -218.848473 kcal Electronic energy + Delta-G solvation = -27587.603711 eV Core-core repulsion = 23164.746012 eV Total energy + Delta-G solvation = -4422.857699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.26013 -47.21148 -40.93481 -39.84319 -37.21168 -36.74853 -33.20321 -32.48726 -32.06082 -31.70075 -29.35315 -25.63658 -25.48247 -24.86957 -23.60872 -22.23866 -20.87786 -19.54529 -18.27300 -17.96560 -17.64450 -17.22277 -17.01691 -16.60153 -16.46177 -16.21724 -15.91132 -15.06582 -14.85642 -14.51967 -14.08179 -14.04786 -13.98480 -13.59206 -13.54232 -13.29810 -13.14125 -13.09164 -13.04513 -12.71753 -12.61127 -12.28311 -12.16715 -11.96955 -11.92169 -11.72532 -11.11421 -11.08760 -11.08138 -10.88057 -10.79875 -10.77742 -9.86305 -9.57749 -9.13131 -8.92165 -8.30775 -6.57757 -6.27583 -3.99013 1.73782 2.07710 2.63422 2.82138 3.16986 3.17958 3.26088 3.28657 3.46326 3.52015 3.90949 3.97989 4.14022 4.20144 4.41140 4.57158 4.59363 4.62890 4.67998 4.85725 4.91722 5.06572 5.07997 5.13757 5.25443 5.28665 5.30977 5.42815 5.44676 5.54830 5.63563 5.65326 5.74252 5.99033 6.04683 6.23625 7.23904 7.31196 7.54254 8.29266 8.31804 9.18099 10.79815 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.002759 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.806607 B =10147.180188 C =11344.842075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.348 6.348 4 C 0.473 3.527 5 O -0.488 6.488 6 C -0.142 4.142 7 H 0.143 0.857 8 C 0.127 3.873 9 N -0.624 5.624 10 C 0.539 3.461 11 O -0.506 6.506 12 C -0.153 4.153 13 S -0.059 6.059 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.107 3.893 23 C -0.174 4.174 24 C 0.312 3.688 25 F -0.190 7.190 26 F -0.187 7.187 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -20.949 -4.267 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.265 6.265 4 C 0.314 3.686 5 O -0.374 6.374 6 C -0.163 4.163 7 H 0.160 0.840 8 C 0.004 3.996 9 N -0.361 5.361 10 C 0.327 3.673 11 O -0.378 6.378 12 C -0.303 4.303 13 S 0.168 5.832 14 C -0.684 4.684 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.016 4.016 23 C -0.213 4.213 24 C 0.275 3.725 25 F -0.170 7.170 26 F -0.167 7.167 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.069 -21.232 -4.132 21.847 hybrid contribution 2.319 0.601 -0.201 2.404 sum 5.388 -20.632 -4.333 21.759 Atomic orbital electron populations 1.21825 0.92189 1.03089 1.04000 1.23114 0.95688 0.79563 1.02776 1.86522 1.23378 1.32965 1.83646 1.22864 0.81392 0.91216 0.73160 1.90752 1.60313 1.42284 1.44032 1.22709 0.93992 0.93389 1.06164 0.83962 1.21466 1.01141 0.83452 0.93588 1.48170 1.06677 1.05558 1.75729 1.20432 0.87517 0.84597 0.74709 1.90721 1.13682 1.86259 1.47179 1.23585 1.05287 0.96435 1.05020 1.85456 1.07462 0.94468 1.95834 1.22881 0.94659 0.92269 1.58564 0.90812 1.25000 0.95525 0.98582 0.94468 1.70023 1.10509 1.23272 1.46368 0.86109 0.80131 0.81263 0.77948 1.19598 1.20553 1.20552 1.21768 0.80111 1.03044 0.96723 1.23011 1.03841 0.91997 1.02425 1.20614 0.90816 0.88482 0.72550 1.93057 1.91095 1.80979 1.51895 1.93039 1.90919 1.83197 1.49589 0.90090 0.91100 0.91253 0.91058 0.90962 0.90009 0.86039 0.88940 0.88896 0.92172 0.87152 0.89900 0.87580 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.53 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.79 10.15 -39.25 -0.40 -4.19 16 4 C 0.47 5.63 7.02 36.01 0.25 5.88 16 5 O -0.49 -6.95 14.59 -18.76 -0.27 -7.23 16 6 C -0.14 -1.50 2.46 -91.43 -0.22 -1.72 16 7 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 8 C 0.13 1.46 5.47 -3.48 -0.02 1.44 16 9 N -0.62 -7.78 2.97 -172.50 -0.51 -8.29 16 10 C 0.54 9.17 7.72 -10.99 -0.08 9.09 16 11 O -0.51 -10.55 15.27 5.56 0.08 -10.46 16 12 C -0.15 -2.80 4.50 36.01 0.16 -2.64 16 13 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 14 C -0.54 -14.58 9.50 30.94 0.29 -14.29 16 15 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 17 N -0.87 -25.39 13.22 55.49 0.73 -24.66 16 18 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.11 0.99 6.13 -3.71 -0.02 0.96 16 23 C -0.17 -1.41 5.62 -26.62 -0.15 -1.56 16 24 C 0.31 3.33 1.37 -26.69 -0.04 3.30 16 25 F -0.19 -2.34 16.06 2.25 0.04 -2.30 16 26 F -0.19 -2.28 15.27 2.25 0.03 -2.24 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.12 1.54 7.00 -51.93 -0.36 1.17 16 34 H 0.09 1.52 7.69 -51.91 -0.40 1.12 16 35 H 0.09 1.56 7.94 -51.92 -0.41 1.15 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.11 0.95 5.93 -51.92 -0.31 0.64 16 38 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 39 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -34.82 356.38 -6.70 -41.52 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.23 Total: -2.06 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.69 Total: 2.56 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.22 Total: -32.95 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.59 Total: -21.88 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.82 -6.70 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870924669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.326 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds