Wall clock time and date at job start Tue Mar 31 2020 20:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34226 * 117.00250 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99927 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00436 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.49191 * 300.06591 * 6 4 3 8 8 C 1.53626 * 109.43034 * 60.28789 * 6 4 3 9 9 N 1.46929 * 108.54034 * 174.72876 * 8 6 4 10 10 C 1.34771 * 120.62695 * 126.37129 * 9 8 6 11 11 O 1.21281 * 120.00398 * 359.71890 * 10 9 8 12 12 C 1.50702 * 119.99698 * 179.71665 * 10 9 8 13 13 S 1.81002 * 109.47279 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99786 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00453 * 359.72125 * 14 13 12 16 16 C 1.38805 * 119.99580 * 180.02562 * 14 13 12 17 17 N 1.31633 * 120.00030 * 359.71792 * 16 14 13 18 18 Si 1.86798 * 119.99665 * 179.72429 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 119.99872 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99431 * 18 16 14 22 22 C 1.46923 * 118.73408 * 306.09114 * 9 8 6 23 23 C 1.53187 * 108.77973 * 53.86414 * 22 9 8 24 24 C 1.53034 * 109.31157 * 305.36491 * 23 22 9 25 25 F 1.39899 * 109.46149 * 181.38141 * 24 23 22 26 26 F 1.39904 * 109.46034 * 301.33875 * 24 23 22 27 27 H 1.09001 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47242 * 299.99779 * 1 2 3 29 29 H 1.08996 * 109.47063 * 59.99879 * 1 2 3 30 30 H 1.09000 * 109.46757 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.47063 * 120.00121 * 2 1 3 32 32 H 1.08998 * 109.74051 * 54.98876 * 8 6 4 33 33 H 1.09001 * 109.66586 * 294.41956 * 8 6 4 34 34 H 1.09002 * 109.47315 * 59.99436 * 12 10 9 35 35 H 1.09004 * 109.46949 * 300.00089 * 12 10 9 36 36 H 0.97000 * 119.99668 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.58049 * 173.65152 * 22 9 8 38 38 H 1.09007 * 109.58879 * 294.07388 * 22 9 8 39 39 H 1.09008 * 109.49486 * 65.31208 * 23 22 9 40 40 H 1.08994 * 109.50258 * 185.40578 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5836 3.4708 -0.8888 8 6 3.4532 3.6834 1.2590 9 7 4.1249 4.9893 1.3047 10 6 3.4101 6.1252 1.4283 11 8 2.2003 6.0758 1.4977 12 6 4.1141 7.4566 1.4802 13 16 2.8907 8.7800 1.6469 14 6 3.9585 10.1812 1.6812 15 1 5.0278 10.0472 1.6120 16 6 3.4255 11.4570 1.8035 17 7 2.1221 11.6205 1.8884 18 14 4.5579 12.9420 1.8476 19 1 5.9687 12.4921 1.7365 20 1 4.2350 13.8446 0.7136 21 1 4.3702 13.6697 3.1285 22 6 5.5910 5.0329 1.2195 23 6 6.0350 4.2714 -0.0333 24 6 5.4491 2.8580 -0.0008 25 9 5.8783 2.1494 -1.1280 26 9 5.8822 2.2004 1.1556 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7139 3.1070 2.1466 33 1 2.3736 3.8290 1.2194 34 1 4.6839 7.6024 0.5624 35 1 4.7906 7.4768 2.3347 36 1 1.7497 12.5121 1.9735 37 1 5.9225 6.0692 1.1539 38 1 6.0226 4.5643 2.1041 39 1 5.6781 4.7928 -0.9216 40 1 7.1232 4.2137 -0.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870924669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:22 Heat of formation + Delta-G solvation = -240.482572 kcal Electronic energy + Delta-G solvation = -27588.541836 eV Core-core repulsion = 23164.746012 eV Total energy + Delta-G solvation = -4423.795824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.13976 -48.10680 -41.87114 -41.01288 -38.22674 -37.77191 -34.54644 -34.18906 -32.89449 -32.41670 -30.70805 -27.66619 -26.32607 -25.94855 -24.31704 -23.06267 -21.80546 -20.69989 -19.71771 -18.98735 -18.81979 -18.26951 -17.90656 -17.65475 -17.39844 -17.21080 -16.97435 -16.84020 -16.20235 -15.83542 -15.35166 -14.99175 -14.90470 -14.69407 -14.51689 -14.42434 -14.15740 -14.00359 -13.88209 -13.75420 -13.61933 -13.38592 -13.11453 -13.03219 -12.93372 -12.89155 -12.58852 -12.56506 -12.48150 -11.98729 -11.69052 -11.64854 -11.62338 -11.12684 -10.95590 -10.20875 -9.99968 -8.62641 -8.31493 -6.08558 0.78577 1.20355 1.31888 1.44147 1.47502 1.51316 1.58689 1.92851 2.29910 2.43288 2.74706 3.02562 3.03639 3.16862 3.27110 3.40968 3.62395 3.66930 3.80784 3.95585 4.00327 4.07678 4.28057 4.28821 4.34730 4.36162 4.39908 4.52936 4.56195 4.68317 4.75024 4.88289 4.90833 5.05279 5.24120 5.32118 5.46818 6.09006 6.24054 6.41047 7.03307 7.10879 8.77676 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.002759 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.806607 B =10147.180188 C =11344.842075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.475 3.525 5 O -0.514 6.514 6 C -0.138 4.138 7 H 0.156 0.844 8 C 0.131 3.869 9 N -0.610 5.610 10 C 0.542 3.458 11 O -0.554 6.554 12 C -0.127 4.127 13 S -0.152 6.152 14 C -0.540 4.540 15 H 0.086 0.914 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.996 3.004 19 H -0.254 1.254 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.100 3.900 23 C -0.165 4.165 24 C 0.306 3.694 25 F -0.199 7.199 26 F -0.196 7.196 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.270 0.730 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -21.194 -4.657 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.317 3.683 5 O -0.402 6.402 6 C -0.158 4.158 7 H 0.174 0.826 8 C 0.008 3.992 9 N -0.345 5.345 10 C 0.331 3.669 11 O -0.430 6.430 12 C -0.278 4.278 13 S 0.075 5.925 14 C -0.688 4.688 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.818 3.182 19 H -0.178 1.178 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.022 4.022 23 C -0.203 4.203 24 C 0.270 3.730 25 F -0.180 7.180 26 F -0.177 7.177 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.484 -21.517 -4.529 22.662 hybrid contribution 1.586 0.479 -0.087 1.659 sum 7.070 -21.038 -4.615 22.669 Atomic orbital electron populations 1.21851 0.90499 1.04538 1.03709 1.23388 0.97031 0.78501 1.03033 1.86534 1.22903 1.34502 1.83196 1.23077 0.81521 0.91381 0.72353 1.90737 1.60890 1.43167 1.45439 1.22724 0.94342 0.92670 1.06112 0.82635 1.21436 1.00360 0.82922 0.94515 1.48054 1.08074 1.04517 1.73827 1.20175 0.86877 0.85254 0.74617 1.90714 1.15668 1.86901 1.49765 1.23421 1.03106 0.94092 1.07182 1.85662 1.12419 0.98207 1.96224 1.23228 0.95119 0.92610 1.57865 0.89557 1.26094 0.97076 1.02084 0.93940 1.70189 1.12774 1.24015 1.47880 0.84937 0.78520 0.76855 0.77847 1.17763 1.20214 1.20310 1.22102 0.77598 1.04349 0.98166 1.23031 1.05323 0.89760 1.02165 1.20933 0.90657 0.89560 0.71856 1.93037 1.91140 1.81425 1.52425 1.93020 1.90978 1.83623 1.50119 0.87768 0.91505 0.91374 0.90743 0.90812 0.89132 0.87487 0.86326 0.86748 0.92124 0.85807 0.88328 0.86389 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 71.98 0.74 -1.01 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.62 10.15 -51.38 -0.52 -8.14 16 4 C 0.47 11.00 7.02 71.24 0.50 11.50 16 5 O -0.51 -14.41 14.59 21.95 0.32 -14.09 16 6 C -0.14 -2.73 2.46 -11.32 -0.03 -2.76 16 7 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 8 C 0.13 2.85 5.47 86.51 0.47 3.33 16 9 N -0.61 -13.93 2.97 -818.06 -2.43 -16.36 16 10 C 0.54 17.88 7.72 87.66 0.68 18.56 16 11 O -0.55 -23.45 15.27 -3.03 -0.05 -23.49 16 12 C -0.13 -4.44 4.50 71.24 0.32 -4.12 16 13 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 14 C -0.54 -29.15 9.50 67.96 0.65 -28.50 16 15 H 0.09 4.26 7.80 -2.92 -0.02 4.24 16 16 C 0.01 0.70 5.49 84.86 0.47 1.16 16 17 N -0.91 -54.43 13.22 21.65 0.29 -54.14 16 18 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 19 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 22 C 0.10 1.48 6.13 86.36 0.53 2.01 16 23 C -0.16 -2.08 5.62 30.67 0.17 -1.90 16 24 C 0.31 5.87 1.37 30.62 0.04 5.91 16 25 F -0.20 -4.56 16.06 44.97 0.72 -3.84 16 26 F -0.20 -4.41 15.27 44.97 0.69 -3.72 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 32 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 33 H 0.11 2.71 7.00 -2.39 -0.02 2.70 16 34 H 0.12 3.54 7.69 -2.39 -0.02 3.52 16 35 H 0.11 3.53 7.94 -2.39 -0.02 3.51 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 37 H 0.12 1.58 5.93 -2.38 -0.01 1.56 16 38 H 0.10 1.26 7.92 -2.38 -0.02 1.24 16 39 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.56 356.38 5.94 -71.62 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.07 Total: 11.77 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.98 Total: 5.51 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -2.14 Total: -70.50 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.25 Total: -45.72 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.41 Total: -7.56 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -77.56 5.94 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870924669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.863 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds