Wall clock time and date at job start Tue Mar 31 2020 20:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45205 * 109.46952 * 2 1 4 4 C 1.34231 * 116.99554 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00155 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99833 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.50047 * 60.05606 * 6 4 3 8 8 C 1.53201 * 109.49506 * 299.99346 * 6 4 3 9 9 N 1.46920 * 108.77364 * 185.41288 * 8 6 4 10 10 C 1.34777 * 120.63268 * 233.58247 * 9 8 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00092 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.38795 * 119.99810 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00234 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99664 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47405 * 90.00153 * 18 16 14 20 20 H 1.48505 * 109.47032 * 209.99913 * 18 16 14 21 21 H 1.48497 * 109.47409 * 329.99921 * 18 16 14 22 22 C 1.46927 * 118.74032 * 53.86485 * 9 8 6 23 23 C 1.53627 * 108.54183 * 306.09058 * 22 9 8 24 24 C 1.53040 * 109.24108 * 54.85576 * 23 22 9 25 25 F 1.39907 * 109.46075 * 178.49382 * 24 23 22 26 26 F 1.39900 * 109.46112 * 58.53343 * 24 23 22 27 27 H 1.09004 * 109.47254 * 300.00810 * 1 2 3 28 28 H 1.09003 * 109.46924 * 60.00226 * 1 2 3 29 29 H 1.08997 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 239.99689 * 2 1 3 31 31 H 1.08997 * 109.46964 * 119.99317 * 2 1 3 32 32 H 1.09001 * 109.58322 * 65.62563 * 8 6 4 33 33 H 1.08997 * 109.58549 * 305.20222 * 8 6 4 34 34 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 35 35 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 36 36 H 0.97005 * 119.99806 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.58858 * 65.92197 * 22 9 8 38 38 H 1.08995 * 109.58867 * 186.34993 * 22 9 8 39 39 H 1.08999 * 109.63425 * 294.86802 * 23 22 9 40 40 H 1.08997 * 109.46146 * 174.73964 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5864 3.4691 0.8908 8 6 3.4485 3.6865 -1.2501 9 7 4.1204 4.9921 -1.3010 10 6 3.4053 6.1283 -1.4196 11 8 2.1952 6.0791 -1.4849 12 6 4.1092 7.4598 -1.4711 13 16 2.8851 8.7836 -1.6307 14 6 3.9528 10.1848 -1.6672 15 1 5.0222 10.0508 -1.5984 16 6 3.4194 11.4607 -1.7853 17 7 2.1161 11.6240 -1.8706 18 14 4.5514 12.9462 -1.8247 19 1 4.9294 13.2434 -3.2297 20 1 3.8501 14.1185 -1.2423 21 1 5.7745 12.6577 -1.0335 22 6 5.5872 5.0352 -1.2265 23 6 6.0352 4.2714 0.0288 24 6 5.4492 2.8580 -0.0048 25 9 5.8824 2.1469 1.1195 26 9 5.8783 2.2030 -1.1641 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.3694 3.8325 -1.2027 33 1 3.7026 3.1098 -2.1394 34 1 4.7826 7.4820 -2.3279 35 1 4.6820 7.6036 -0.5549 36 1 1.7434 12.5158 -1.9528 37 1 6.0121 4.5662 -2.1140 38 1 5.9196 6.0713 -1.1635 39 1 5.6814 4.7908 0.9194 40 1 7.1234 4.2135 0.0497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870924670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:26 Heat of formation + Delta-G solvation = -218.779846 kcal Electronic energy + Delta-G solvation = -27587.914339 eV Core-core repulsion = 23165.059616 eV Total energy + Delta-G solvation = -4422.854723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.25962 -47.21129 -40.94033 -39.84163 -37.21267 -36.74662 -33.21924 -32.48765 -32.04831 -31.69327 -29.35240 -25.63414 -25.48384 -24.86730 -23.61155 -22.24079 -20.87846 -19.54506 -18.27380 -17.96961 -17.64267 -17.22354 -17.01798 -16.59708 -16.46566 -16.21904 -15.90916 -15.06603 -14.85432 -14.51851 -14.07797 -14.04795 -13.98288 -13.59291 -13.54216 -13.30001 -13.13278 -13.09139 -13.04687 -12.71871 -12.60997 -12.28441 -12.16516 -11.96893 -11.92311 -11.72958 -11.11160 -11.08674 -11.08020 -10.88152 -10.80259 -10.77940 -9.87306 -9.57693 -9.12296 -8.92100 -8.31171 -6.57731 -6.27309 -3.98895 1.73732 2.07508 2.63411 2.82170 3.16809 3.18810 3.25714 3.28232 3.46241 3.52117 3.91430 3.97893 4.14256 4.20161 4.40800 4.57187 4.59286 4.62802 4.68062 4.85760 4.91681 5.06689 5.08174 5.13715 5.25468 5.28508 5.30950 5.42920 5.44626 5.54887 5.63606 5.65280 5.74260 5.99007 6.04535 6.23689 7.23941 7.31033 7.53952 8.29113 8.31833 9.18208 10.80031 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002759 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.823953 B =10146.692615 C =11344.720703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.348 6.348 4 C 0.473 3.527 5 O -0.488 6.488 6 C -0.141 4.141 7 H 0.143 0.857 8 C 0.127 3.873 9 N -0.624 5.624 10 C 0.539 3.461 11 O -0.506 6.506 12 C -0.153 4.153 13 S -0.058 6.058 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.107 3.893 23 C -0.174 4.174 24 C 0.312 3.688 25 F -0.190 7.190 26 F -0.187 7.187 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -20.952 4.216 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.265 6.265 4 C 0.314 3.686 5 O -0.374 6.374 6 C -0.162 4.162 7 H 0.160 0.840 8 C 0.003 3.997 9 N -0.361 5.361 10 C 0.327 3.673 11 O -0.378 6.378 12 C -0.303 4.303 13 S 0.168 5.832 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.016 4.016 23 C -0.213 4.213 24 C 0.275 3.725 25 F -0.170 7.170 26 F -0.167 7.167 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.069 -21.233 4.091 21.840 hybrid contribution 2.329 0.597 0.190 2.412 sum 5.397 -20.636 4.282 21.755 Atomic orbital electron populations 1.21828 0.92186 1.03088 1.04002 1.23118 0.95690 0.79557 1.02777 1.86525 1.23371 1.32969 1.83649 1.22854 0.81395 0.91203 0.73163 1.90750 1.60315 1.42274 1.44022 1.22627 0.94006 0.93382 1.06224 0.83966 1.21373 1.01102 0.83479 0.93741 1.48168 1.06633 1.05542 1.75789 1.20434 0.87523 0.84597 0.74705 1.90720 1.13677 1.86271 1.47170 1.23585 1.05296 0.96435 1.05017 1.85451 1.07390 0.94420 1.95911 1.22840 0.94623 0.92276 1.58713 0.90864 1.24991 0.95518 0.98568 0.94458 1.70010 1.10511 1.23377 1.46285 0.86165 0.80012 0.80839 0.78467 1.20244 1.20743 1.19676 1.21859 0.80049 1.03022 0.96688 1.23087 1.03811 0.91980 1.02401 1.20617 0.90808 0.88488 0.72552 1.93059 1.90979 1.80863 1.52122 1.93038 1.91036 1.83311 1.49360 0.91244 0.91106 0.90089 0.90960 0.91055 0.86041 0.90060 0.88896 0.88938 0.92115 0.89864 0.87150 0.87567 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.79 10.15 -39.26 -0.40 -4.19 16 4 C 0.47 5.63 7.03 36.00 0.25 5.88 16 5 O -0.49 -6.95 14.59 -18.75 -0.27 -7.22 16 6 C -0.14 -1.50 2.44 -91.65 -0.22 -1.72 16 7 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 8 C 0.13 1.45 5.44 -3.71 -0.02 1.43 16 9 N -0.62 -7.78 2.97 -172.50 -0.51 -8.29 16 10 C 0.54 9.17 7.72 -10.98 -0.08 9.09 16 11 O -0.51 -10.55 15.27 5.56 0.08 -10.46 16 12 C -0.15 -2.81 4.50 36.01 0.16 -2.64 16 13 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 14 C -0.54 -14.61 9.50 30.94 0.29 -14.31 16 15 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 17 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 18 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.11 0.99 6.16 -3.48 -0.02 0.97 16 23 C -0.17 -1.41 5.64 -26.39 -0.15 -1.56 16 24 C 0.31 3.34 1.37 -26.69 -0.04 3.30 16 25 F -0.19 -2.34 16.06 2.25 0.04 -2.30 16 26 F -0.19 -2.28 15.27 2.25 0.03 -2.24 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.12 1.54 7.01 -51.93 -0.36 1.17 16 33 H 0.08 0.88 7.92 -51.93 -0.41 0.46 16 34 H 0.09 1.56 7.93 -51.92 -0.41 1.15 16 35 H 0.09 1.52 7.70 -51.91 -0.40 1.12 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 38 H 0.11 0.95 5.93 -51.93 -0.31 0.64 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -34.81 356.38 -6.70 -41.51 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.23 Total: -2.03 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 0.69 Total: 2.55 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.22 Total: -32.97 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.59 Total: -21.88 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.81 -6.70 -41.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870924670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.274 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds