Wall clock time and date at job start Tue Mar 31 2020 20:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45205 * 109.46952 * 2 1 4 4 C 1.34231 * 116.99554 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00155 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99833 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.50047 * 60.05606 * 6 4 3 8 8 C 1.53201 * 109.49506 * 299.99346 * 6 4 3 9 9 N 1.46920 * 108.77364 * 185.41288 * 8 6 4 10 10 C 1.34777 * 120.63268 * 233.58247 * 9 8 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00092 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.38795 * 119.99810 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00234 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99664 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47405 * 90.00153 * 18 16 14 20 20 H 1.48505 * 109.47032 * 209.99913 * 18 16 14 21 21 H 1.48497 * 109.47409 * 329.99921 * 18 16 14 22 22 C 1.46927 * 118.74032 * 53.86485 * 9 8 6 23 23 C 1.53627 * 108.54183 * 306.09058 * 22 9 8 24 24 C 1.53040 * 109.24108 * 54.85576 * 23 22 9 25 25 F 1.39907 * 109.46075 * 178.49382 * 24 23 22 26 26 F 1.39900 * 109.46112 * 58.53343 * 24 23 22 27 27 H 1.09004 * 109.47254 * 300.00810 * 1 2 3 28 28 H 1.09003 * 109.46924 * 60.00226 * 1 2 3 29 29 H 1.08997 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47271 * 239.99689 * 2 1 3 31 31 H 1.08997 * 109.46964 * 119.99317 * 2 1 3 32 32 H 1.09001 * 109.58322 * 65.62563 * 8 6 4 33 33 H 1.08997 * 109.58549 * 305.20222 * 8 6 4 34 34 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 35 35 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 36 36 H 0.97005 * 119.99806 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.58858 * 65.92197 * 22 9 8 38 38 H 1.08995 * 109.58867 * 186.34993 * 22 9 8 39 39 H 1.08999 * 109.63425 * 294.86802 * 23 22 9 40 40 H 1.08997 * 109.46146 * 174.73964 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5864 3.4691 0.8908 8 6 3.4485 3.6865 -1.2501 9 7 4.1204 4.9921 -1.3010 10 6 3.4053 6.1283 -1.4196 11 8 2.1952 6.0791 -1.4849 12 6 4.1092 7.4598 -1.4711 13 16 2.8851 8.7836 -1.6307 14 6 3.9528 10.1848 -1.6672 15 1 5.0222 10.0508 -1.5984 16 6 3.4194 11.4607 -1.7853 17 7 2.1161 11.6240 -1.8706 18 14 4.5514 12.9462 -1.8247 19 1 4.9294 13.2434 -3.2297 20 1 3.8501 14.1185 -1.2423 21 1 5.7745 12.6577 -1.0335 22 6 5.5872 5.0352 -1.2265 23 6 6.0352 4.2714 0.0288 24 6 5.4492 2.8580 -0.0048 25 9 5.8824 2.1469 1.1195 26 9 5.8783 2.2030 -1.1641 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.3694 3.8325 -1.2027 33 1 3.7026 3.1098 -2.1394 34 1 4.7826 7.4820 -2.3279 35 1 4.6820 7.6036 -0.5549 36 1 1.7434 12.5158 -1.9528 37 1 6.0121 4.5662 -2.1140 38 1 5.9196 6.0713 -1.1635 39 1 5.6814 4.7908 0.9194 40 1 7.1234 4.2135 0.0497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870924670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:25 Heat of formation + Delta-G solvation = -240.404589 kcal Electronic energy + Delta-G solvation = -27588.852058 eV Core-core repulsion = 23165.059616 eV Total energy + Delta-G solvation = -4423.792442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.13966 -48.10700 -41.87671 -41.01199 -38.22719 -37.77134 -34.54737 -34.20672 -32.87694 -32.41199 -30.70825 -27.66386 -26.32795 -25.94580 -24.31983 -23.06424 -21.80657 -20.70059 -19.71553 -18.99129 -18.82133 -18.27060 -17.90749 -17.65374 -17.39769 -17.21469 -16.97210 -16.83813 -16.20334 -15.83599 -15.35111 -14.98658 -14.90437 -14.69597 -14.51550 -14.42357 -14.15812 -14.00289 -13.87875 -13.75422 -13.61892 -13.38663 -13.12013 -13.03245 -12.92967 -12.86588 -12.59734 -12.57313 -12.48763 -11.99069 -11.69634 -11.66335 -11.62423 -11.10907 -10.95572 -10.21263 -9.99960 -8.62669 -8.31264 -6.08495 0.78552 1.20116 1.31781 1.45256 1.47458 1.51327 1.57764 1.92766 2.30162 2.43147 2.74804 3.03142 3.03948 3.16684 3.27092 3.40854 3.62138 3.66672 3.80953 3.95580 4.00271 4.07378 4.28093 4.28798 4.34826 4.36115 4.39733 4.52926 4.56206 4.68176 4.75005 4.88261 4.90877 5.05213 5.24102 5.32060 5.46476 6.08989 6.23813 6.40905 7.03296 7.10951 8.77666 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002759 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.823953 B =10146.692615 C =11344.720703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.475 3.525 5 O -0.514 6.514 6 C -0.138 4.138 7 H 0.156 0.844 8 C 0.131 3.869 9 N -0.610 5.610 10 C 0.542 3.458 11 O -0.554 6.554 12 C -0.127 4.127 13 S -0.152 6.152 14 C -0.542 4.542 15 H 0.086 0.914 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.996 3.004 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.256 1.256 22 C 0.100 3.900 23 C -0.165 4.165 24 C 0.306 3.694 25 F -0.199 7.199 26 F -0.196 7.196 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.270 0.730 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 -21.194 4.606 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.317 3.683 5 O -0.402 6.402 6 C -0.158 4.158 7 H 0.174 0.826 8 C 0.007 3.993 9 N -0.345 5.345 10 C 0.331 3.669 11 O -0.430 6.430 12 C -0.278 4.278 13 S 0.075 5.925 14 C -0.689 4.689 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.818 3.182 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.180 1.180 22 C -0.022 4.022 23 C -0.203 4.203 24 C 0.270 3.730 25 F -0.180 7.180 26 F -0.177 7.177 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.489 -21.514 4.488 22.652 hybrid contribution 1.596 0.473 0.074 1.666 sum 7.085 -21.041 4.562 22.665 Atomic orbital electron populations 1.21854 0.90497 1.04536 1.03709 1.23392 0.97031 0.78494 1.03036 1.86538 1.22895 1.34506 1.83199 1.23065 0.81525 0.91366 0.72357 1.90735 1.60891 1.43155 1.45429 1.22641 0.94350 0.92662 1.06184 0.82634 1.21341 1.00321 0.82951 0.94662 1.48052 1.08032 1.04500 1.73885 1.20177 0.86883 0.85255 0.74612 1.90713 1.15664 1.86913 1.49757 1.23421 1.03113 0.94086 1.07186 1.85658 1.12357 0.98168 1.96295 1.23198 0.95120 0.92617 1.58004 0.89550 1.26088 0.97066 1.02080 0.93920 1.70181 1.12782 1.24073 1.47825 0.84991 0.78069 0.76354 0.78811 1.19534 1.20692 1.17956 1.22194 0.77530 1.04330 0.98132 1.23106 1.05286 0.89745 1.02141 1.20935 0.90650 0.89564 0.71859 1.93039 1.91026 1.81311 1.52648 1.93019 1.91094 1.83733 1.49892 0.91364 0.91513 0.87767 0.90810 0.90735 0.87489 0.89198 0.86736 0.86330 0.92117 0.88293 0.85804 0.86380 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 71.98 0.74 -1.01 16 2 C 0.05 0.88 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.61 10.15 -51.42 -0.52 -8.14 16 4 C 0.47 11.01 7.03 71.24 0.50 11.51 16 5 O -0.51 -14.40 14.59 21.96 0.32 -14.08 16 6 C -0.14 -2.73 2.44 -11.46 -0.03 -2.75 16 7 H 0.16 2.64 8.14 -2.39 -0.02 2.63 16 8 C 0.13 2.85 5.44 86.37 0.47 3.32 16 9 N -0.61 -13.94 2.97 -818.06 -2.43 -16.36 16 10 C 0.54 17.88 7.72 87.66 0.68 18.56 16 11 O -0.55 -23.45 15.27 -3.02 -0.05 -23.50 16 12 C -0.13 -4.44 4.50 71.24 0.32 -4.12 16 13 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 14 C -0.54 -29.22 9.50 67.95 0.65 -28.58 16 15 H 0.09 4.25 7.80 -2.91 -0.02 4.23 16 16 C 0.01 0.72 5.49 84.86 0.47 1.19 16 17 N -0.91 -54.47 13.22 21.65 0.29 -54.18 16 18 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C 0.10 1.49 6.16 86.51 0.53 2.02 16 23 C -0.16 -2.08 5.64 30.82 0.17 -1.91 16 24 C 0.31 5.88 1.37 30.62 0.04 5.92 16 25 F -0.20 -4.56 16.06 44.97 0.72 -3.84 16 26 F -0.20 -4.41 15.27 44.97 0.69 -3.72 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.11 2.71 7.01 -2.39 -0.02 2.70 16 33 H 0.09 1.83 7.92 -2.39 -0.02 1.81 16 34 H 0.11 3.53 7.93 -2.39 -0.02 3.51 16 35 H 0.12 3.54 7.70 -2.39 -0.02 3.52 16 36 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 37 H 0.10 1.26 7.92 -2.38 -0.02 1.24 16 38 H 0.12 1.58 5.93 -2.39 -0.01 1.56 16 39 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.54 356.38 5.94 -71.61 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.07 Total: 11.89 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.99 Total: 5.46 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -2.14 Total: -70.55 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.25 Total: -45.72 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.41 Total: -7.57 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -77.54 5.94 -71.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870924670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.799 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds