Wall clock time and date at job start Tue Mar 31 2020 20:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00088 * 2 1 4 4 O 1.20823 * 119.99850 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47330 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.36935 * 119.99676 * 84.75291 * 7 6 5 9 9 H 1.07995 * 120.00126 * 321.63178 * 8 7 6 10 10 C 1.38817 * 119.99634 * 141.62798 * 8 7 6 11 11 N 1.31614 * 120.00275 * 338.41244 * 10 8 7 12 12 Si 1.86803 * 119.99691 * 158.41593 * 10 8 7 13 13 H 1.48499 * 109.47042 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47133 * 119.99875 * 12 10 8 15 15 H 1.48510 * 109.46619 * 240.00024 * 12 10 8 16 16 C 1.46499 * 120.00185 * 264.75531 * 7 6 5 17 17 C 1.50698 * 109.47414 * 89.99912 * 16 7 6 18 18 C 1.35122 * 125.68929 * 94.71393 * 17 16 7 19 19 N 1.36821 * 107.18171 * 179.88300 * 18 17 16 20 20 C 1.36533 * 132.55692 * 180.10819 * 19 18 17 21 21 C 1.35050 * 120.59737 * 180.30441 * 20 19 18 22 22 Cl 1.73597 * 119.86894 * 179.97438 * 21 20 19 23 23 C 1.40558 * 120.26479 * 0.02562 * 21 20 19 24 24 C 1.36010 * 119.69238 * 359.97438 * 23 21 20 25 25 C 1.37051 * 107.00578 * 0.37909 * 19 18 17 26 26 N 1.32584 * 108.03829 * 359.76566 * 25 19 18 27 27 H 1.08999 * 109.46884 * 300.00551 * 1 2 3 28 28 H 1.09003 * 109.46608 * 60.00338 * 1 2 3 29 29 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47347 * 60.00042 * 5 3 2 31 31 H 1.09001 * 109.47654 * 300.00405 * 5 3 2 32 32 H 1.09002 * 109.46698 * 60.00476 * 6 5 3 33 33 H 1.08989 * 109.47190 * 300.00557 * 6 5 3 34 34 H 0.97001 * 120.00186 * 180.02562 * 11 10 8 35 35 H 1.08999 * 109.46934 * 209.99887 * 16 7 6 36 36 H 1.09001 * 109.47297 * 330.00092 * 16 7 6 37 37 H 1.08001 * 126.40571 * 0.02644 * 18 17 16 38 38 H 1.08005 * 119.70540 * 0.32128 * 20 19 18 39 39 H 1.07999 * 120.14756 * 179.97438 * 23 21 20 40 40 H 1.07995 * 120.32273 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 0.0010 8 6 6.1536 2.7453 -1.1793 9 1 5.8239 2.0721 -1.9568 10 6 7.2772 3.5363 -1.3765 11 7 7.4466 4.6286 -0.6622 12 14 8.5486 3.0502 -2.6558 13 1 8.1275 1.7897 -3.3183 14 1 8.6666 4.1278 -3.6707 15 1 9.8629 2.8465 -1.9949 16 6 6.1876 2.9738 1.2649 17 6 6.5099 1.6142 1.8294 18 6 7.6679 0.9411 1.6514 19 7 7.5549 -0.2434 2.3269 20 6 8.4071 -1.2972 2.4921 21 6 8.0372 -2.3728 3.2201 22 17 9.1357 -3.7025 3.4175 23 6 6.7660 -2.4205 3.8179 24 6 5.9080 -1.3770 3.6605 25 6 6.3093 -0.2616 2.8983 26 7 5.6967 0.8713 2.5837 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9565 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6101 3.2367 0.8894 33 1 3.6108 3.2356 -0.8905 34 1 8.2315 5.1815 -0.8003 35 1 7.1127 3.5225 1.0884 36 1 5.5684 3.5238 1.9735 37 1 8.5237 1.2765 1.0842 38 1 9.3861 -1.2702 2.0368 39 1 6.4720 -3.2818 4.3993 40 1 4.9289 -1.4027 4.1156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:12 Heat of formation + Delta-G solvation = 21.742196 kcal Electronic energy + Delta-G solvation = -26664.946036 eV Core-core repulsion = 22701.166612 eV Total energy + Delta-G solvation = -3963.779425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47408 -40.01500 -37.84344 -36.60160 -36.20069 -35.47031 -33.47135 -32.12872 -30.81488 -29.52128 -28.60057 -27.39680 -26.13240 -24.44480 -23.19154 -22.49316 -21.56283 -20.11682 -19.78584 -17.78066 -17.25834 -16.87501 -16.70311 -16.15605 -16.10075 -15.80203 -15.61370 -14.84452 -14.57640 -14.03626 -13.95236 -13.66190 -13.23486 -13.19879 -12.86773 -12.83298 -12.67394 -12.15491 -12.07715 -11.93363 -11.36712 -11.28376 -11.21602 -10.96743 -10.92156 -10.77914 -10.68881 -10.55405 -10.31019 -10.17485 -9.98830 -9.87395 -9.60458 -8.62174 -8.29068 -7.60305 -6.75749 -5.95359 -3.51981 0.71718 1.33095 1.68991 2.67125 2.98498 3.09572 3.18978 3.25126 3.35932 3.38729 3.70986 4.33631 4.37989 4.53656 4.68861 5.04400 5.19325 5.20921 5.24693 5.27858 5.28374 5.57126 5.70234 5.71492 5.81853 5.86644 5.90134 5.94654 6.08088 6.16350 6.39889 6.53009 6.70207 6.73546 6.77846 7.05853 7.14289 7.27812 7.43600 7.71864 8.17514 8.30545 8.41542 9.03546 9.64032 10.24193 11.07100 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007413 B = 0.004683 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3776.398187 B = 5977.776086 C = 8788.904887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.514 6.514 5 C -0.136 4.136 6 C 0.166 3.834 7 N -0.568 5.568 8 C -0.264 4.264 9 H 0.062 0.938 10 C 0.019 3.981 11 N -0.880 5.880 12 Si 0.893 3.107 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.287 1.287 16 C 0.213 3.787 17 C 0.078 3.922 18 C -0.078 4.078 19 N -0.362 5.362 20 C 0.079 3.921 21 C -0.073 4.073 22 Cl -0.052 7.052 23 C -0.113 4.113 24 C -0.056 4.056 25 C 0.200 3.800 26 N -0.478 5.478 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.257 0.743 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -14.140 7.872 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.402 6.402 5 C -0.177 4.177 6 C 0.039 3.961 7 N -0.285 5.285 8 C -0.394 4.394 9 H 0.079 0.921 10 C -0.182 4.182 11 N -0.522 5.522 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.214 1.214 15 H -0.213 1.213 16 C 0.085 3.915 17 C -0.056 4.056 18 C -0.208 4.208 19 N -0.036 5.036 20 C -0.046 4.046 21 C -0.104 4.104 22 Cl -0.024 7.024 23 C -0.137 4.137 24 C -0.077 4.077 25 C -0.042 4.042 26 N -0.200 5.200 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.198 0.802 38 H 0.182 0.818 39 H 0.162 0.838 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.883 -13.459 8.035 15.788 hybrid contribution 1.574 -0.846 -0.994 2.045 sum -0.310 -14.305 7.041 15.947 Atomic orbital electron populations 1.23149 0.77639 1.02941 1.02209 1.86573 1.22570 1.34742 1.84547 1.24435 0.92752 0.80708 0.71212 1.90613 1.67484 1.36317 1.45801 1.22394 0.84650 1.05149 1.05474 1.20641 0.85068 0.89715 1.00717 1.43696 0.99256 1.83542 1.02043 1.19038 1.08783 1.17659 0.93885 0.92066 1.25175 1.00900 0.94212 0.97895 1.70010 1.28154 1.11628 1.42367 0.86396 0.81585 0.78458 0.81400 1.20013 1.21378 1.21303 1.19596 1.00357 0.85939 0.85643 1.22889 0.88547 1.00213 0.93918 1.22729 1.04647 0.86038 1.07344 1.42806 1.13221 1.13293 1.34264 1.21205 0.96500 0.86697 1.00208 1.19882 0.93777 0.91357 1.05344 1.98368 1.62511 1.44923 1.96558 1.20733 0.91622 0.99856 1.01464 1.20150 1.00644 0.89563 0.97324 1.21064 0.83431 0.97597 1.02123 1.70742 1.30207 1.01531 1.17492 0.92231 0.92278 0.88758 0.88719 0.87410 0.93238 0.92538 0.93252 0.87131 0.93258 0.80169 0.81764 0.83755 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.92 10.57 -39.25 -0.41 -6.33 16 3 C 0.47 8.57 7.96 36.00 0.29 8.86 16 4 O -0.51 -10.48 15.73 -18.75 -0.29 -10.78 16 5 C -0.14 -2.62 6.11 -27.88 -0.17 -2.79 16 6 C 0.17 3.60 5.01 -4.04 -0.02 3.58 16 7 N -0.57 -13.38 2.41 -174.61 -0.42 -13.80 16 8 C -0.26 -6.70 9.44 -15.06 -0.14 -6.85 16 9 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16 10 C 0.02 0.49 4.94 -17.43 -0.09 0.41 16 11 N -0.88 -23.40 11.54 55.49 0.64 -22.76 16 12 Si 0.89 20.01 29.61 -169.99 -5.03 14.98 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.21 4.74 5.86 -5.20 -0.03 4.71 16 17 C 0.08 1.57 6.55 -82.98 -0.54 1.03 16 18 C -0.08 -1.42 11.66 -16.43 -0.19 -1.61 16 19 N -0.36 -5.83 2.95 -62.62 -0.18 -6.01 16 20 C 0.08 1.01 10.70 -16.59 -0.18 0.83 16 21 C -0.07 -0.83 6.28 -39.84 -0.25 -1.08 16 22 Cl -0.05 -0.51 28.94 -51.86 -1.50 -2.01 16 23 C -0.11 -1.22 9.86 -39.51 -0.39 -1.60 16 24 C -0.06 -0.72 10.10 -39.36 -0.40 -1.11 16 25 C 0.20 3.34 7.81 -156.05 -1.22 2.12 16 26 N -0.48 -9.22 10.01 -9.01 -0.09 -9.31 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.11 2.13 6.68 -51.93 -0.35 1.79 16 32 H 0.05 1.08 7.79 -51.93 -0.40 0.67 16 33 H 0.06 1.29 8.04 -51.94 -0.42 0.87 16 34 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.11 2.68 5.59 -51.93 -0.29 2.39 16 36 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 37 H 0.18 3.12 8.06 -52.49 -0.42 2.70 16 38 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -29.50 362.86 -8.89 -38.39 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.80 Total: 4.19 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -2.26 Total: 7.97 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.06 Total: -51.88 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.71 Total: -17.11 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.50 -8.89 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.136 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds