Wall clock time and date at job start Tue Mar 31 2020 20:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00088 * 2 1 4 4 O 1.20823 * 119.99850 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47330 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.36935 * 119.99676 * 84.75291 * 7 6 5 9 9 H 1.07995 * 120.00126 * 321.63178 * 8 7 6 10 10 C 1.38817 * 119.99634 * 141.62798 * 8 7 6 11 11 N 1.31614 * 120.00275 * 338.41244 * 10 8 7 12 12 Si 1.86803 * 119.99691 * 158.41593 * 10 8 7 13 13 H 1.48499 * 109.47042 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47133 * 119.99875 * 12 10 8 15 15 H 1.48510 * 109.46619 * 240.00024 * 12 10 8 16 16 C 1.46499 * 120.00185 * 264.75531 * 7 6 5 17 17 C 1.50698 * 109.47414 * 89.99912 * 16 7 6 18 18 C 1.35122 * 125.68929 * 94.71393 * 17 16 7 19 19 N 1.36821 * 107.18171 * 179.88300 * 18 17 16 20 20 C 1.36533 * 132.55692 * 180.10819 * 19 18 17 21 21 C 1.35050 * 120.59737 * 180.30441 * 20 19 18 22 22 Cl 1.73597 * 119.86894 * 179.97438 * 21 20 19 23 23 C 1.40558 * 120.26479 * 0.02562 * 21 20 19 24 24 C 1.36010 * 119.69238 * 359.97438 * 23 21 20 25 25 C 1.37051 * 107.00578 * 0.37909 * 19 18 17 26 26 N 1.32584 * 108.03829 * 359.76566 * 25 19 18 27 27 H 1.08999 * 109.46884 * 300.00551 * 1 2 3 28 28 H 1.09003 * 109.46608 * 60.00338 * 1 2 3 29 29 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47347 * 60.00042 * 5 3 2 31 31 H 1.09001 * 109.47654 * 300.00405 * 5 3 2 32 32 H 1.09002 * 109.46698 * 60.00476 * 6 5 3 33 33 H 1.08989 * 109.47190 * 300.00557 * 6 5 3 34 34 H 0.97001 * 120.00186 * 180.02562 * 11 10 8 35 35 H 1.08999 * 109.46934 * 209.99887 * 16 7 6 36 36 H 1.09001 * 109.47297 * 330.00092 * 16 7 6 37 37 H 1.08001 * 126.40571 * 0.02644 * 18 17 16 38 38 H 1.08005 * 119.70540 * 0.32128 * 20 19 18 39 39 H 1.07999 * 120.14756 * 179.97438 * 23 21 20 40 40 H 1.07995 * 120.32273 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 0.0010 8 6 6.1536 2.7453 -1.1793 9 1 5.8239 2.0721 -1.9568 10 6 7.2772 3.5363 -1.3765 11 7 7.4466 4.6286 -0.6622 12 14 8.5486 3.0502 -2.6558 13 1 8.1275 1.7897 -3.3183 14 1 8.6666 4.1278 -3.6707 15 1 9.8629 2.8465 -1.9949 16 6 6.1876 2.9738 1.2649 17 6 6.5099 1.6142 1.8294 18 6 7.6679 0.9411 1.6514 19 7 7.5549 -0.2434 2.3269 20 6 8.4071 -1.2972 2.4921 21 6 8.0372 -2.3728 3.2201 22 17 9.1357 -3.7025 3.4175 23 6 6.7660 -2.4205 3.8179 24 6 5.9080 -1.3770 3.6605 25 6 6.3093 -0.2616 2.8983 26 7 5.6967 0.8713 2.5837 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9565 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6101 3.2367 0.8894 33 1 3.6108 3.2356 -0.8905 34 1 8.2315 5.1815 -0.8003 35 1 7.1127 3.5225 1.0884 36 1 5.5684 3.5238 1.9735 37 1 8.5237 1.2765 1.0842 38 1 9.3861 -1.2702 2.0368 39 1 6.4720 -3.2818 4.3993 40 1 4.9289 -1.4027 4.1156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:11 Heat of formation + Delta-G solvation = 7.896096 kcal Electronic energy + Delta-G solvation = -26665.546448 eV Core-core repulsion = 22701.166612 eV Total energy + Delta-G solvation = -3964.379837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.71877 -41.44801 -38.97268 -37.97192 -37.43101 -36.92086 -34.62285 -33.96274 -32.35689 -30.90916 -29.85152 -28.56838 -27.76183 -26.09309 -24.35430 -23.66095 -23.15323 -21.55339 -21.38745 -19.05550 -18.72438 -18.41134 -17.92121 -17.54750 -17.45530 -16.93059 -16.85302 -16.63847 -15.71466 -15.61494 -15.33534 -15.13842 -14.70874 -14.68296 -14.18495 -13.89675 -13.84883 -13.66409 -13.29119 -13.13673 -13.01825 -12.78559 -12.72016 -12.50289 -12.28318 -12.11942 -12.06385 -11.95638 -11.83060 -11.75845 -11.55704 -11.48796 -11.00734 -10.54721 -9.52733 -8.82424 -8.64869 -7.87725 -5.49428 -0.30515 0.22767 0.73385 1.18808 1.45584 1.51087 1.60399 1.77382 1.83527 1.90310 2.47130 2.54806 3.19872 3.29039 3.51551 3.66813 3.73590 3.98199 4.02567 4.20932 4.21905 4.32457 4.34492 4.34916 4.51649 4.55499 4.68745 4.75501 4.80215 4.87168 4.95852 4.99937 5.16079 5.24770 5.39020 5.40719 5.53587 5.70424 5.74175 6.10906 6.44668 6.75164 6.99144 7.12323 7.75134 8.34359 9.12955 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007413 B = 0.004683 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3776.398187 B = 5977.776086 C = 8788.904887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.120 4.120 6 C 0.171 3.829 7 N -0.580 5.580 8 C -0.272 4.272 9 H 0.054 0.946 10 C -0.019 4.019 11 N -0.911 5.911 12 Si 0.953 3.047 13 H -0.272 1.272 14 H -0.293 1.293 15 H -0.280 1.280 16 C 0.224 3.776 17 C 0.057 3.943 18 C -0.089 4.089 19 N -0.363 5.363 20 C 0.063 3.937 21 C -0.065 4.065 22 Cl -0.028 7.028 23 C -0.085 4.085 24 C -0.072 4.072 25 C 0.198 3.802 26 N -0.511 5.511 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.257 0.743 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -17.881 8.741 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.318 3.682 4 O -0.428 6.428 5 C -0.161 4.161 6 C 0.044 3.956 7 N -0.299 5.299 8 C -0.401 4.401 9 H 0.072 0.928 10 C -0.217 4.217 11 N -0.553 5.553 12 Si 0.781 3.219 13 H -0.197 1.197 14 H -0.220 1.220 15 H -0.205 1.205 16 C 0.096 3.904 17 C -0.076 4.076 18 C -0.219 4.219 19 N -0.036 5.036 20 C -0.061 4.061 21 C -0.095 4.095 22 Cl 0.001 6.999 23 C -0.109 4.109 24 C -0.093 4.093 25 C -0.045 4.045 26 N -0.233 5.233 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.199 0.801 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.613 -17.247 8.917 19.482 hybrid contribution 1.463 0.068 -1.121 1.844 sum -0.151 -17.179 7.797 18.866 Atomic orbital electron populations 1.23556 0.74926 1.05700 1.02470 1.86531 1.25110 1.32922 1.83843 1.24057 0.92272 0.81123 0.70739 1.90605 1.67873 1.37279 1.47073 1.22024 0.85814 1.02944 1.05281 1.20510 0.84426 0.91329 0.99305 1.43800 0.99807 1.84172 1.02134 1.19150 1.09233 1.17290 0.94461 0.92803 1.25770 1.02260 0.94021 0.99689 1.70120 1.28602 1.12604 1.43984 0.85469 0.79597 0.77797 0.79084 1.19651 1.21970 1.20547 1.19222 0.98741 0.87396 0.84994 1.22279 0.89958 0.99622 0.95741 1.22540 1.04172 0.87100 1.08108 1.42764 1.13636 1.13351 1.33887 1.21677 0.97064 0.86304 1.01024 1.20118 0.94359 0.91287 1.03744 1.98392 1.61795 1.43424 1.96310 1.21211 0.90373 0.99881 0.99397 1.20496 1.02307 0.88831 0.97637 1.21653 0.83404 0.97700 1.01783 1.70609 1.31012 1.02892 1.18762 0.91983 0.92113 0.84759 0.88823 0.87597 0.94047 0.94409 0.93407 0.89356 0.94486 0.80074 0.79773 0.79871 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -11.36 10.57 -51.38 -0.54 -11.91 16 3 C 0.47 17.50 7.96 71.23 0.57 18.06 16 4 O -0.54 -22.23 15.73 21.97 0.35 -21.88 16 5 C -0.12 -4.76 6.11 29.85 0.18 -4.57 16 6 C 0.17 7.82 5.01 86.38 0.43 8.25 16 7 N -0.58 -28.76 2.41 -706.35 -1.70 -30.46 16 8 C -0.27 -14.29 9.44 84.03 0.79 -13.49 16 9 H 0.05 2.86 7.92 -2.91 -0.02 2.84 16 10 C -0.02 -0.98 4.94 84.86 0.42 -0.56 16 11 N -0.91 -50.24 11.54 21.65 0.25 -49.99 16 12 Si 0.95 41.90 29.61 68.60 2.03 43.93 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.22 10.62 5.86 85.63 0.50 11.12 16 17 C 0.06 2.40 6.55 41.59 0.27 2.67 16 18 C -0.09 -3.32 11.66 83.20 0.97 -2.35 16 19 N -0.36 -11.41 2.95 -352.04 -1.04 -12.44 16 20 C 0.06 1.47 10.70 83.23 0.89 2.36 16 21 C -0.06 -1.24 6.28 22.10 0.14 -1.10 16 22 Cl -0.03 -0.43 28.94 -2.72 -0.08 -0.51 16 23 C -0.08 -1.46 9.86 22.32 0.22 -1.24 16 24 C -0.07 -1.64 10.10 22.41 0.23 -1.41 16 25 C 0.20 6.44 7.81 134.11 1.05 7.49 16 26 N -0.51 -20.08 10.01 -182.41 -1.83 -21.90 16 27 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.11 4.28 6.68 -2.39 -0.02 4.27 16 32 H 0.04 1.92 7.79 -2.39 -0.02 1.90 16 33 H 0.04 1.82 8.04 -2.39 -0.02 1.81 16 34 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.09 4.57 5.59 -2.39 -0.01 4.56 16 36 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 37 H 0.18 6.51 8.06 -2.91 -0.02 6.49 16 38 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -66.22 362.86 6.37 -59.85 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.07 Total: 18.31 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 7.86 Total: 27.00 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.32 Total: -114.79 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.20 Total: -33.79 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -66.22 6.37 -59.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.746 kcal (2) G-P(sol) polarization free energy of solvation -66.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds