Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00030 * 2 1 4 4 O 1.20822 * 119.99768 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99678 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46783 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47262 * 180.02562 * 6 5 3 8 8 C 1.36929 * 119.99781 * 269.99868 * 7 6 5 9 9 H 1.08006 * 120.00434 * 144.88698 * 8 7 6 10 10 C 1.38814 * 120.00354 * 324.88895 * 8 7 6 11 11 N 1.31620 * 120.00341 * 156.82851 * 10 8 7 12 12 Si 1.86797 * 119.99714 * 336.83263 * 10 8 7 13 13 H 1.48506 * 109.47136 * 95.33795 * 12 10 8 14 14 H 1.48502 * 109.47456 * 215.33903 * 12 10 8 15 15 H 1.48503 * 109.47414 * 335.34353 * 12 10 8 16 16 C 1.46497 * 120.00079 * 89.99626 * 7 6 5 17 17 C 1.50705 * 109.47113 * 275.31580 * 16 7 6 18 18 C 1.35215 * 126.42171 * 274.85168 * 17 16 7 19 19 Cl 1.73594 * 125.69770 * 359.97438 * 18 17 16 20 20 N 1.33550 * 108.60188 * 179.97438 * 18 17 16 21 21 C 1.32593 * 109.17246 * 359.97438 * 20 18 17 22 22 C 1.40908 * 132.30467 * 180.02562 * 21 20 18 23 23 C 1.36042 * 119.32946 * 179.97438 * 22 21 20 24 24 C 1.40460 * 119.69222 * 359.97438 * 23 22 21 25 25 C 1.34967 * 120.28732 * 359.97202 * 24 23 22 26 26 N 1.36462 * 120.61758 * 0.05297 * 25 24 23 27 27 H 1.09001 * 109.47206 * 299.99792 * 1 2 3 28 28 H 1.09005 * 109.47525 * 59.99408 * 1 2 3 29 29 H 1.09003 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47370 * 60.00282 * 5 3 2 31 31 H 1.09003 * 109.47211 * 300.00067 * 5 3 2 32 32 H 1.08995 * 109.47333 * 59.99775 * 6 5 3 33 33 H 1.09003 * 109.46906 * 299.99769 * 6 5 3 34 34 H 0.96994 * 120.00121 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.47355 * 155.31903 * 16 7 6 36 36 H 1.08996 * 109.47291 * 35.31430 * 16 7 6 37 37 H 1.07998 * 120.33816 * 359.97438 * 22 21 20 38 38 H 1.08005 * 120.15270 * 180.25344 * 23 22 21 39 39 H 1.07995 * 119.85058 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.68669 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1478 2.8536 1.1843 9 1 7.1074 2.3651 1.2684 10 6 5.6086 3.5168 2.2781 11 7 5.9893 3.1949 3.4962 12 14 4.3427 4.8662 2.0211 13 1 2.9778 4.2958 2.1514 14 1 4.5355 5.9269 3.0424 15 1 4.5083 5.4486 0.6651 16 6 6.1936 2.8579 -1.2703 17 6 6.4042 1.4527 -1.7723 18 6 7.4116 0.6194 -1.4271 19 17 8.6967 0.9880 -0.3198 20 7 7.2527 -0.5346 -2.0804 21 6 6.1660 -0.4609 -2.8365 22 6 5.5542 -1.3818 -3.7100 23 6 4.4189 -1.0230 -4.3681 24 6 3.8735 0.2559 -4.1682 25 6 4.4705 1.1266 -3.3274 26 7 5.6100 0.7797 -2.6614 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7804 0.8892 32 1 3.6108 3.2355 0.8906 33 1 3.6100 3.2366 -0.8894 34 1 5.6128 3.6586 4.2605 35 1 7.1602 3.3382 -1.1186 36 1 5.6181 3.4231 -2.0033 37 1 5.9822 -2.3626 -3.8557 38 1 3.9366 -1.7199 -5.0376 39 1 2.9726 0.5436 -4.6896 40 1 4.0426 2.1074 -3.1806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = 33.324856 kcal Electronic energy + Delta-G solvation = -27875.655464 eV Core-core repulsion = 23912.378301 eV Total energy + Delta-G solvation = -3963.277163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69185 -40.19255 -37.48164 -36.77500 -35.98527 -35.93309 -33.59227 -31.91336 -31.37417 -30.00993 -29.06151 -27.54615 -25.96262 -24.36648 -23.45472 -22.49026 -21.80439 -20.59075 -20.30429 -17.51932 -17.40003 -16.87356 -16.64509 -16.37710 -16.27248 -15.94874 -15.87486 -15.28835 -14.73977 -14.28409 -13.99430 -13.77887 -13.66257 -13.19582 -12.90019 -12.58832 -12.50266 -12.34694 -12.25405 -11.87329 -11.81677 -11.69895 -11.27198 -11.01783 -10.92000 -10.79158 -10.76483 -10.67410 -10.46751 -10.19947 -9.95543 -9.75353 -9.53685 -8.67855 -8.45497 -7.65073 -7.12434 -6.06834 -3.51502 0.76053 1.33301 2.16837 2.47672 2.88025 2.91292 2.98257 3.33073 3.46083 3.47903 3.57334 4.32629 4.45891 4.62438 4.73735 4.80814 4.94843 5.09209 5.12606 5.16510 5.19605 5.28119 5.31542 5.47087 5.51756 5.53206 5.62779 5.78797 5.91700 5.98233 6.10868 6.22961 6.29921 6.37739 6.48519 6.52519 6.53346 6.66879 7.13718 7.85056 7.90649 8.00863 8.28265 8.84658 9.59644 9.90124 11.06707 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008534 B = 0.006934 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.069559 B = 4037.147993 C = 6407.935089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.513 6.513 5 C -0.133 4.133 6 C 0.147 3.853 7 N -0.585 5.585 8 C -0.283 4.283 9 H 0.099 0.901 10 C 0.044 3.956 11 N -0.888 5.888 12 Si 0.866 3.134 13 H -0.282 1.282 14 H -0.300 1.300 15 H -0.268 1.268 16 C 0.215 3.785 17 C -0.034 4.034 18 C 0.115 3.885 19 Cl 0.012 6.988 20 N -0.486 5.486 21 C 0.222 3.778 22 C -0.076 4.076 23 C -0.105 4.105 24 C -0.150 4.150 25 C 0.066 3.934 26 N -0.355 5.355 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 -6.784 -15.411 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.401 6.401 5 C -0.173 4.173 6 C 0.021 3.979 7 N -0.304 5.304 8 C -0.411 4.411 9 H 0.116 0.884 10 C -0.158 4.158 11 N -0.527 5.527 12 Si 0.696 3.304 13 H -0.210 1.210 14 H -0.228 1.228 15 H -0.193 1.193 16 C 0.086 3.914 17 C -0.151 4.151 18 C -0.043 4.043 19 Cl 0.040 6.960 20 N -0.208 5.208 21 C -0.021 4.021 22 C -0.096 4.096 23 C -0.129 4.129 24 C -0.171 4.171 25 C -0.056 4.056 26 N -0.029 5.029 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.839 -6.978 -14.961 17.511 hybrid contribution -1.514 1.249 0.163 1.969 sum -7.352 -5.729 -14.798 17.489 Atomic orbital electron populations 1.23186 0.77357 1.03170 1.02263 1.86579 1.22771 1.34310 1.84341 1.24369 0.92616 0.80945 0.71467 1.90627 1.67428 1.36320 1.45693 1.22333 0.85135 1.04281 1.05574 1.21145 0.84807 0.90890 1.01101 1.44226 1.00137 1.83945 1.02085 1.19028 1.05857 1.30271 0.85909 0.88368 1.25372 0.97697 0.97558 0.95169 1.69874 1.44786 1.40466 0.97617 0.87125 0.81506 0.83792 0.77950 1.20968 1.22799 1.19275 1.19433 0.98928 0.85384 0.87615 1.22578 0.93673 1.00709 0.98185 1.20538 0.94134 0.91343 0.98259 1.98391 1.46568 1.92863 1.58138 1.70360 1.16098 1.22946 1.11390 1.20635 0.93350 0.86212 1.01931 1.20190 0.95687 0.98619 0.95140 1.20943 0.95562 0.96430 0.99924 1.20731 1.01784 0.94158 1.00396 1.21590 0.87293 1.01478 0.95264 1.42705 1.17860 1.13365 1.28977 0.92126 0.92244 0.88510 0.89403 0.86959 0.91214 0.93450 0.92520 0.88496 0.93297 0.83439 0.84289 0.83522 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.78 10.56 -39.26 -0.41 -6.19 16 3 C 0.46 8.43 7.96 36.01 0.29 8.71 16 4 O -0.51 -10.34 15.73 -18.75 -0.29 -10.63 16 5 C -0.13 -2.53 6.01 -27.88 -0.17 -2.70 16 6 C 0.15 3.06 3.84 -4.04 -0.02 3.04 16 7 N -0.58 -12.68 2.11 -174.61 -0.37 -13.05 16 8 C -0.28 -7.26 9.91 -15.06 -0.15 -7.41 16 9 H 0.10 2.66 6.62 -52.48 -0.35 2.31 16 10 C 0.04 1.20 5.31 -17.43 -0.09 1.11 16 11 N -0.89 -25.99 13.97 55.49 0.78 -25.22 16 12 Si 0.87 21.59 24.99 -169.99 -4.25 17.34 16 13 H -0.28 -7.17 6.65 56.52 0.38 -6.79 16 14 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.21 3.89 5.93 -5.19 -0.03 3.86 16 17 C -0.03 -0.61 5.90 -81.40 -0.48 -1.09 16 18 C 0.12 2.20 7.67 -17.88 -0.14 2.06 16 19 Cl 0.01 0.23 27.61 -51.86 -1.43 -1.20 16 20 N -0.49 -9.07 11.32 -9.92 -0.11 -9.18 16 21 C 0.22 3.54 7.81 -156.03 -1.22 2.33 16 22 C -0.08 -0.90 10.11 -39.36 -0.40 -1.30 16 23 C -0.10 -0.97 10.07 -39.53 -0.40 -1.37 16 24 C -0.15 -1.42 9.99 -39.91 -0.40 -1.82 16 25 C 0.07 0.80 9.53 -16.65 -0.16 0.64 16 26 N -0.36 -5.48 2.21 -58.42 -0.13 -5.61 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.56 5.20 -51.93 -0.27 1.29 16 31 H 0.11 2.37 8.14 -51.93 -0.42 1.94 16 32 H 0.07 1.67 2.96 -51.93 -0.15 1.51 16 33 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 1.76 7.90 -51.93 -0.41 1.35 16 36 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 37 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.16 1.71 7.93 -52.49 -0.42 1.30 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -32.70 351.32 -7.75 -40.46 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.53 Total: 0.44 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.29 Total: 7.55 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.16 Total: -53.05 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.71 Total: -16.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.25 Total: 17.34 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.43 Total: -1.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.70 -7.75 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.782 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds