Wall clock time and date at job start Tue Mar 31 2020 20:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00030 * 2 1 4 4 O 1.20822 * 119.99768 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99678 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46783 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47262 * 180.02562 * 6 5 3 8 8 C 1.36929 * 119.99781 * 269.99868 * 7 6 5 9 9 H 1.08006 * 120.00434 * 144.88698 * 8 7 6 10 10 C 1.38814 * 120.00354 * 324.88895 * 8 7 6 11 11 N 1.31620 * 120.00341 * 156.82851 * 10 8 7 12 12 Si 1.86797 * 119.99714 * 336.83263 * 10 8 7 13 13 H 1.48506 * 109.47136 * 95.33795 * 12 10 8 14 14 H 1.48502 * 109.47456 * 215.33903 * 12 10 8 15 15 H 1.48503 * 109.47414 * 335.34353 * 12 10 8 16 16 C 1.46497 * 120.00079 * 89.99626 * 7 6 5 17 17 C 1.50705 * 109.47113 * 275.31580 * 16 7 6 18 18 C 1.35215 * 126.42171 * 274.85168 * 17 16 7 19 19 Cl 1.73594 * 125.69770 * 359.97438 * 18 17 16 20 20 N 1.33550 * 108.60188 * 179.97438 * 18 17 16 21 21 C 1.32593 * 109.17246 * 359.97438 * 20 18 17 22 22 C 1.40908 * 132.30467 * 180.02562 * 21 20 18 23 23 C 1.36042 * 119.32946 * 179.97438 * 22 21 20 24 24 C 1.40460 * 119.69222 * 359.97438 * 23 22 21 25 25 C 1.34967 * 120.28732 * 359.97202 * 24 23 22 26 26 N 1.36462 * 120.61758 * 0.05297 * 25 24 23 27 27 H 1.09001 * 109.47206 * 299.99792 * 1 2 3 28 28 H 1.09005 * 109.47525 * 59.99408 * 1 2 3 29 29 H 1.09003 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47370 * 60.00282 * 5 3 2 31 31 H 1.09003 * 109.47211 * 300.00067 * 5 3 2 32 32 H 1.08995 * 109.47333 * 59.99775 * 6 5 3 33 33 H 1.09003 * 109.46906 * 299.99769 * 6 5 3 34 34 H 0.96994 * 120.00121 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.47355 * 155.31903 * 16 7 6 36 36 H 1.08996 * 109.47291 * 35.31430 * 16 7 6 37 37 H 1.07998 * 120.33816 * 359.97438 * 22 21 20 38 38 H 1.08005 * 120.15270 * 180.25344 * 23 22 21 39 39 H 1.07995 * 119.85058 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.68669 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1478 2.8536 1.1843 9 1 7.1074 2.3651 1.2684 10 6 5.6086 3.5168 2.2781 11 7 5.9893 3.1949 3.4962 12 14 4.3427 4.8662 2.0211 13 1 2.9778 4.2958 2.1514 14 1 4.5355 5.9269 3.0424 15 1 4.5083 5.4486 0.6651 16 6 6.1936 2.8579 -1.2703 17 6 6.4042 1.4527 -1.7723 18 6 7.4116 0.6194 -1.4271 19 17 8.6967 0.9880 -0.3198 20 7 7.2527 -0.5346 -2.0804 21 6 6.1660 -0.4609 -2.8365 22 6 5.5542 -1.3818 -3.7100 23 6 4.4189 -1.0230 -4.3681 24 6 3.8735 0.2559 -4.1682 25 6 4.4705 1.1266 -3.3274 26 7 5.6100 0.7797 -2.6614 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7804 0.8892 32 1 3.6108 3.2355 0.8906 33 1 3.6100 3.2366 -0.8894 34 1 5.6128 3.6586 4.2605 35 1 7.1602 3.3382 -1.1186 36 1 5.6181 3.4231 -2.0033 37 1 5.9822 -2.3626 -3.8557 38 1 3.9366 -1.7199 -5.0376 39 1 2.9726 0.5436 -4.6896 40 1 4.0426 2.1074 -3.1806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:15 Heat of formation + Delta-G solvation = 14.179364 kcal Electronic energy + Delta-G solvation = -27876.485675 eV Core-core repulsion = 23912.378301 eV Total energy + Delta-G solvation = -3964.107374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.83674 -41.57256 -38.63637 -38.22155 -37.43593 -37.28217 -34.75731 -33.83718 -32.83814 -31.06728 -30.38877 -28.66372 -27.43124 -25.95530 -24.49022 -23.68123 -23.27751 -21.90288 -21.74375 -19.10206 -18.64894 -18.13385 -17.97617 -17.80666 -17.63184 -17.17107 -16.95142 -16.84152 -15.86789 -15.71445 -15.30315 -15.15112 -15.03837 -14.66180 -14.37088 -14.20971 -13.77368 -13.69916 -13.42908 -13.32838 -13.03909 -12.93339 -12.61048 -12.57030 -12.47348 -12.14756 -12.08645 -11.90883 -11.86576 -11.73978 -11.65241 -11.42282 -11.09152 -10.67033 -9.61773 -9.07808 -8.68343 -8.16113 -5.55564 -0.15051 0.29587 0.87704 1.04493 1.33426 1.41863 1.49538 1.62870 1.72699 1.78077 2.42918 2.59038 3.04793 3.30585 3.35805 3.74069 3.77046 3.81029 3.91314 3.98391 4.08461 4.18797 4.23919 4.28045 4.29727 4.40728 4.60133 4.65680 4.68667 4.75764 4.85174 4.92994 4.99001 5.19414 5.26453 5.27228 5.33161 5.61234 5.92775 6.07793 6.30118 6.62309 6.69548 6.91420 7.59549 7.95783 9.01583 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008534 B = 0.006934 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.069559 B = 4037.147993 C = 6407.935089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.471 3.529 4 O -0.533 6.533 5 C -0.122 4.122 6 C 0.147 3.853 7 N -0.595 5.595 8 C -0.254 4.254 9 H 0.077 0.923 10 C -0.010 4.010 11 N -0.939 5.939 12 Si 0.922 3.078 13 H -0.292 1.292 14 H -0.312 1.312 15 H -0.250 1.250 16 C 0.218 3.782 17 C -0.050 4.050 18 C 0.093 3.907 19 Cl -0.008 7.008 20 N -0.530 5.530 21 C 0.221 3.779 22 C -0.103 4.103 23 C -0.072 4.072 24 C -0.127 4.127 25 C 0.035 3.965 26 N -0.354 5.354 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -7.804 -19.411 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.315 3.685 4 O -0.423 6.423 5 C -0.162 4.162 6 C 0.022 3.978 7 N -0.315 5.315 8 C -0.384 4.384 9 H 0.094 0.906 10 C -0.207 4.207 11 N -0.583 5.583 12 Si 0.753 3.247 13 H -0.220 1.220 14 H -0.241 1.241 15 H -0.174 1.174 16 C 0.091 3.909 17 C -0.167 4.167 18 C -0.064 4.064 19 Cl 0.021 6.979 20 N -0.253 5.253 21 C -0.023 4.023 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.086 4.086 26 N -0.027 5.027 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.182 0.818 38 H 0.203 0.797 39 H 0.208 0.792 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.136 -8.003 -19.027 22.574 hybrid contribution -0.663 1.338 1.131 1.873 sum -9.800 -6.666 -17.897 21.465 Atomic orbital electron populations 1.23593 0.74626 1.05825 1.02648 1.86543 1.25333 1.32682 1.83655 1.23955 0.92060 0.81350 0.71093 1.90621 1.67733 1.37115 1.46815 1.22033 0.86392 1.02874 1.04931 1.21070 0.84032 0.91933 1.00809 1.44261 1.00636 1.84416 1.02156 1.19009 1.04736 1.27483 0.87126 0.90558 1.25855 1.00031 0.99759 0.95051 1.69987 1.47558 1.42339 0.98380 0.86217 0.79067 0.81321 0.78121 1.22018 1.24102 1.17389 1.19458 0.98618 0.86253 0.86533 1.22069 0.94418 1.00341 0.99901 1.20667 0.94529 0.92375 0.98845 1.98367 1.47602 1.93012 1.58945 1.70275 1.18364 1.23310 1.13360 1.21283 0.92623 0.86965 1.01475 1.20592 0.97104 0.98962 0.95629 1.21558 0.93445 0.96739 0.97854 1.21379 1.01991 0.93305 0.98093 1.22193 0.86814 1.03236 0.96354 1.42714 1.18433 1.12859 1.28645 0.92736 0.90944 0.84774 0.87932 0.89801 0.94179 0.90739 0.93027 0.89382 0.90042 0.81819 0.79689 0.79244 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.63 10.56 -51.42 -0.54 -11.18 16 3 C 0.47 16.25 7.96 71.24 0.57 16.81 16 4 O -0.53 -20.38 15.73 21.98 0.35 -20.03 16 5 C -0.12 -4.53 6.01 29.85 0.18 -4.35 16 6 C 0.15 5.97 3.84 86.38 0.33 6.31 16 7 N -0.59 -25.68 2.11 -706.34 -1.49 -27.18 16 8 C -0.25 -13.43 9.91 84.04 0.83 -12.59 16 9 H 0.08 4.34 6.62 -2.91 -0.02 4.32 16 10 C -0.01 -0.57 5.31 84.86 0.45 -0.12 16 11 N -0.94 -57.56 13.97 21.65 0.30 -57.26 16 12 Si 0.92 45.82 24.99 68.60 1.71 47.53 16 13 H -0.29 -14.79 6.65 99.48 0.66 -14.13 16 14 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 15 H -0.25 -11.49 7.11 99.48 0.71 -10.78 16 16 C 0.22 7.77 5.93 85.64 0.51 8.27 16 17 C -0.05 -1.76 5.90 41.07 0.24 -1.52 16 18 C 0.09 3.67 7.67 83.73 0.64 4.31 16 19 Cl -0.01 -0.30 27.61 -2.72 -0.08 -0.38 16 20 N -0.53 -20.06 11.32 -185.29 -2.10 -22.16 16 21 C 0.22 6.71 7.81 134.09 1.05 7.76 16 22 C -0.10 -2.07 10.11 22.41 0.23 -1.85 16 23 C -0.07 -0.89 10.07 22.30 0.22 -0.67 16 24 C -0.13 -1.63 9.99 22.06 0.22 -1.41 16 25 C 0.04 0.71 9.53 83.22 0.79 1.50 16 26 N -0.35 -10.20 2.21 -338.74 -0.75 -10.95 16 27 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 29 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 3.47 5.20 -2.39 -0.01 3.46 16 31 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.04 1.90 2.96 -2.39 -0.01 1.89 16 33 H 0.07 2.60 7.90 -2.39 -0.02 2.58 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.09 3.24 7.90 -2.39 -0.02 3.23 16 36 H 0.08 2.35 7.81 -2.39 -0.02 2.33 16 37 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.17 2.93 7.93 -2.91 -0.02 2.91 16 Total: -1.00 -76.22 351.32 5.91 -70.31 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.04 Total: 7.11 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.46 Total: 24.18 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.04 Total: -117.54 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.20 Total: -31.21 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.71 Total: 47.53 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -76.22 5.91 -70.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.493 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds