Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00084 * 2 1 4 4 O 1.20829 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00318 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47293 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.46827 * 179.97438 * 6 5 3 8 8 C 1.36935 * 119.99793 * 264.02168 * 7 6 5 9 9 H 1.08002 * 119.99724 * 188.78240 * 8 7 6 10 10 C 1.38814 * 120.00437 * 8.78558 * 8 7 6 11 11 N 1.31624 * 119.99682 * 24.74253 * 10 8 7 12 12 Si 1.86797 * 120.00328 * 204.74478 * 10 8 7 13 13 H 1.48495 * 109.47281 * 84.97964 * 12 10 8 14 14 H 1.48503 * 109.46940 * 204.98423 * 12 10 8 15 15 H 1.48500 * 109.46835 * 324.97841 * 12 10 8 16 16 C 1.46492 * 119.99932 * 84.03033 * 7 6 5 17 17 C 1.50707 * 109.47118 * 269.99411 * 16 7 6 18 18 C 1.35116 * 126.40740 * 94.96131 * 17 16 7 19 19 N 1.33501 * 108.62188 * 180.02562 * 18 17 16 20 20 C 1.32589 * 109.15495 * 359.97438 * 19 18 17 21 21 C 1.40924 * 132.30809 * 180.02562 * 20 19 18 22 22 C 1.36010 * 119.35043 * 180.02562 * 21 20 19 23 23 C 1.40557 * 119.68948 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 119.86384 * 180.02562 * 23 22 21 25 25 C 1.35043 * 120.27252 * 359.97438 * 23 22 21 26 26 N 1.36539 * 120.58945 * 0.02562 * 25 23 22 27 27 H 1.08998 * 109.46694 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46750 * 299.99770 * 1 2 3 29 29 H 1.08997 * 109.47305 * 59.99663 * 1 2 3 30 30 H 1.08994 * 109.47292 * 59.99473 * 5 3 2 31 31 H 1.09005 * 109.46499 * 299.99620 * 5 3 2 32 32 H 1.08996 * 109.46976 * 60.00029 * 6 5 3 33 33 H 1.08996 * 109.47062 * 299.99859 * 6 5 3 34 34 H 0.97002 * 120.00112 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47648 * 149.99627 * 16 7 6 36 36 H 1.08997 * 109.47342 * 29.99649 * 16 7 6 37 37 H 1.07999 * 125.68936 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.32517 * 0.02562 * 21 20 19 39 39 H 1.07997 * 120.15743 * 180.27685 * 22 21 20 40 40 H 1.07997 * 119.70417 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7422 0.0002 7 7 5.4632 2.8188 0.0002 8 6 6.1404 2.9773 1.1798 9 1 7.2020 3.1757 1.1705 10 6 5.4625 2.8830 2.3875 11 7 4.3458 2.1904 2.4630 12 14 6.1352 3.7389 3.9055 13 1 5.6770 5.1513 3.9213 14 1 5.6438 3.0454 5.1233 15 1 7.6194 3.7001 3.8787 16 6 6.2015 2.7260 -1.2616 17 6 6.5287 1.2829 -1.5472 18 6 5.8119 0.4353 -2.3176 19 7 6.4217 -0.7523 -2.3261 20 6 7.5147 -0.6855 -1.5785 21 6 8.5024 -1.6372 -1.2552 22 6 9.5345 -1.2781 -0.4455 23 6 9.6023 0.0332 0.0560 24 17 10.9181 0.4966 1.0893 25 6 8.6487 0.9344 -0.2637 26 7 7.6077 0.5861 -1.0756 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.9558 0.7810 -0.8907 31 1 3.9564 0.7807 0.8892 32 1 3.6108 3.2356 0.8906 33 1 3.6101 3.2368 -0.8893 34 1 3.8719 2.1248 3.3068 35 1 7.1252 3.2997 -1.1852 36 1 5.5907 3.1270 -2.0704 37 1 4.8981 0.6781 -2.8394 38 1 8.4404 -2.6420 -1.6466 39 1 10.3011 -1.9958 -0.1929 40 1 8.7101 1.9396 0.1264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = 15.112383 kcal Electronic energy + Delta-G solvation = -27411.680933 eV Core-core repulsion = 23447.614018 eV Total energy + Delta-G solvation = -3964.066915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.71829 -41.29042 -38.80750 -38.10297 -37.26270 -37.09758 -34.73274 -33.46355 -32.32997 -30.98756 -30.22552 -28.59349 -27.18461 -25.89621 -24.61613 -23.60587 -23.00006 -21.89611 -21.43532 -18.95388 -18.54416 -18.15870 -17.94314 -17.51953 -17.23090 -17.11049 -16.99510 -16.59014 -15.68712 -15.57219 -15.07322 -15.01440 -14.74452 -14.47460 -14.21538 -13.91177 -13.79467 -13.50433 -13.34684 -13.20039 -12.96590 -12.82261 -12.58334 -12.53036 -12.17052 -12.07120 -12.02862 -11.99238 -11.75038 -11.68701 -11.45941 -11.32263 -11.07293 -10.46459 -9.60045 -9.05613 -8.65337 -7.90121 -5.20729 -0.26040 0.25678 0.78558 1.37604 1.46315 1.51411 1.55439 1.82320 1.93907 2.01113 2.51904 2.52746 3.24538 3.31425 3.58202 3.65486 3.72863 3.98183 4.22404 4.26094 4.30397 4.33502 4.34667 4.44056 4.53509 4.61845 4.67800 4.77157 4.88137 4.90706 4.94087 4.99970 5.18518 5.39671 5.50597 5.54010 5.70147 5.71878 5.82530 6.10045 6.25258 6.90051 6.92275 7.10576 7.79948 8.20669 9.12504 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004983 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.190456 B = 5618.198238 C = 7480.304579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.474 3.526 4 O -0.545 6.545 5 C -0.105 4.105 6 C 0.194 3.806 7 N -0.590 5.590 8 C -0.253 4.253 9 H 0.081 0.919 10 C -0.040 4.040 11 N -0.914 5.914 12 Si 0.948 3.052 13 H -0.292 1.292 14 H -0.305 1.305 15 H -0.269 1.269 16 C 0.211 3.789 17 C -0.054 4.054 18 C 0.013 3.987 19 N -0.512 5.512 20 C 0.186 3.814 21 C -0.072 4.072 22 C -0.089 4.089 23 C -0.069 4.069 24 Cl -0.035 7.035 25 C 0.077 3.923 26 N -0.351 5.351 27 H 0.130 0.870 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.245 0.755 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -6.192 -7.222 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C 0.320 3.680 4 O -0.435 6.435 5 C -0.145 4.145 6 C 0.068 3.932 7 N -0.309 5.309 8 C -0.382 4.382 9 H 0.099 0.901 10 C -0.235 4.235 11 N -0.560 5.560 12 Si 0.778 3.222 13 H -0.219 1.219 14 H -0.232 1.232 15 H -0.194 1.194 16 C 0.083 3.917 17 C -0.170 4.170 18 C -0.138 4.138 19 N -0.232 5.232 20 C -0.058 4.058 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.100 4.100 24 Cl -0.006 7.006 25 C -0.047 4.047 26 N -0.024 5.024 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.205 0.795 38 H 0.198 0.802 39 H 0.200 0.800 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.457 -6.466 -7.412 11.766 hybrid contribution -0.015 1.161 1.819 2.158 sum 6.442 -5.305 -5.593 10.046 Atomic orbital electron populations 1.23473 0.75566 1.05324 1.02178 1.86555 1.24745 1.33838 1.84143 1.24450 0.92859 0.80681 0.70052 1.90542 1.68080 1.37208 1.47695 1.22196 0.84596 1.03561 1.04171 1.20459 0.82145 0.91380 0.99225 1.44563 1.01579 1.82342 1.02430 1.19431 0.93794 1.41014 0.83940 0.90148 1.25270 0.98357 1.00313 0.99596 1.70162 1.20231 1.40494 1.25087 0.85570 0.78331 0.78472 0.79847 1.21944 1.23235 1.19351 1.19669 0.97047 0.86062 0.88923 1.23132 0.89871 1.00499 1.03527 1.22424 1.01059 0.88601 1.01678 1.70634 1.06276 1.24328 1.22012 1.21517 0.98550 0.85701 0.99989 1.20503 0.90703 0.99213 0.98820 1.21176 0.99508 0.94166 0.96468 1.20145 0.93373 0.95317 1.01115 1.98380 1.44706 1.92421 1.65140 1.21430 0.87132 1.01567 0.94537 1.42646 1.16775 1.11859 1.31080 0.85159 0.92880 0.91664 0.89747 0.87901 0.91786 0.94819 0.94500 0.91427 0.88389 0.79464 0.80205 0.79998 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.38 -14.07 10.57 -51.41 -0.54 -14.61 16 3 C 0.47 20.18 7.96 71.24 0.57 20.75 16 4 O -0.54 -25.03 15.73 21.95 0.35 -24.69 16 5 C -0.11 -4.62 5.47 29.85 0.16 -4.45 16 6 C 0.19 8.78 4.21 86.38 0.36 9.15 16 7 N -0.59 -25.55 2.52 -706.35 -1.78 -27.33 16 8 C -0.25 -12.04 9.70 84.03 0.82 -11.23 16 9 H 0.08 3.67 7.22 -2.91 -0.02 3.65 16 10 C -0.04 -2.01 4.90 84.86 0.42 -1.60 16 11 N -0.91 -49.23 8.57 21.65 0.19 -49.05 16 12 Si 0.95 42.54 29.62 68.60 2.03 44.57 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 C 0.21 7.30 6.13 85.64 0.53 7.83 16 17 C -0.05 -1.90 6.21 41.06 0.25 -1.65 16 18 C 0.01 0.45 9.77 83.72 0.82 1.26 16 19 N -0.51 -18.54 11.32 -194.36 -2.20 -20.74 16 20 C 0.19 6.23 7.81 134.10 1.05 7.28 16 21 C -0.07 -1.81 10.10 22.41 0.23 -1.59 16 22 C -0.09 -1.95 9.86 22.32 0.22 -1.73 16 23 C -0.07 -1.80 6.28 22.10 0.14 -1.67 16 24 Cl -0.04 -0.81 28.94 -2.72 -0.08 -0.89 16 25 C 0.08 2.41 10.60 83.22 0.88 3.29 16 26 N -0.35 -12.10 2.95 -338.76 -1.00 -13.09 16 27 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.08 3.43 5.39 -2.39 -0.01 3.42 16 31 H 0.10 5.30 6.29 -2.38 -0.02 5.29 16 32 H 0.06 3.41 5.83 -2.39 -0.01 3.40 16 33 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 34 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 35 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 36 H 0.10 2.92 7.95 -2.39 -0.02 2.90 16 37 H 0.19 5.60 7.82 -2.91 -0.02 5.58 16 38 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.17 5.17 7.35 -2.91 -0.02 5.15 16 Total: -1.00 -63.62 353.75 5.68 -57.95 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.08 Total: 20.27 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 7.63 Total: 27.61 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.79 Total: -110.21 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.20 Total: -39.29 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -63.62 5.68 -57.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.058 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds