Wall clock time and date at job start Tue Mar 31 2020 19:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38349 * 120.32905 * 2 1 4 4 N 1.31919 * 121.10653 * 180.02562 * 3 2 1 5 5 C 1.31823 * 121.86009 * 359.72472 * 4 3 2 6 6 Cl 1.73605 * 119.73876 * 180.29329 * 5 4 3 7 7 C 1.39704 * 120.52594 * 0.53576 * 5 4 3 8 8 C 1.47757 * 120.56965 * 179.75563 * 7 5 4 9 9 O 1.21554 * 120.00386 * 42.11328 * 8 7 5 10 10 N 1.34781 * 119.99977 * 222.11513 * 8 7 5 11 11 C 1.46963 * 120.59653 * 184.94070 * 10 8 7 12 12 C 1.53373 * 108.63369 * 235.20747 * 11 10 8 13 13 N 1.46967 * 108.63610 * 310.57172 * 12 11 10 14 14 C 1.34773 * 120.59548 * 235.20587 * 13 12 11 15 15 O 1.21694 * 119.99765 * 5.22258 * 14 13 12 16 16 C 1.46372 * 120.00279 * 185.21836 * 14 13 12 17 17 H 1.08000 * 119.99682 * 354.93511 * 16 14 13 18 18 C 1.40041 * 120.00235 * 174.92939 * 16 14 13 19 19 N 1.30673 * 120.00086 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99979 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47036 * 300.00091 * 20 18 16 23 23 H 1.48494 * 109.46981 * 60.00130 * 20 18 16 24 24 C 1.46964 * 118.80993 * 55.47818 * 13 12 11 25 25 C 1.46967 * 120.59470 * 4.91950 * 10 8 7 26 26 C 1.38357 * 120.33015 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47006 * 269.97916 * 1 2 3 28 28 H 1.08996 * 109.47060 * 29.98596 * 1 2 3 29 29 H 1.09008 * 109.46907 * 149.98009 * 1 2 3 30 30 H 1.07999 * 119.44541 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.61239 * 115.45878 * 11 10 8 32 32 H 1.09000 * 109.60506 * 354.94787 * 11 10 8 33 33 H 1.09002 * 109.60772 * 190.83243 * 12 11 10 34 34 H 1.08996 * 109.61057 * 70.32184 * 12 11 10 35 35 H 0.97004 * 120.00080 * 180.02562 * 19 18 16 36 36 H 1.09006 * 109.60525 * 64.26808 * 24 13 12 37 37 H 1.08992 * 109.61188 * 184.77650 * 24 13 12 38 38 H 1.08999 * 109.60987 * 244.54312 * 25 10 8 39 39 H 1.09002 * 109.60609 * 5.05106 * 25 10 8 40 40 H 1.07998 * 120.84995 * 359.96131 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1941 0.0000 4 7 3.5247 1.2120 -0.0005 5 6 4.2356 0.1020 0.0043 6 17 5.9694 0.1898 0.0111 7 6 3.6050 -1.1446 -0.0010 8 6 4.4009 -2.3895 -0.0010 9 8 5.3836 -2.4826 0.7084 10 7 4.0374 -3.4218 -0.7876 11 6 4.7540 -4.7030 -0.7190 12 6 5.2491 -5.0635 -2.1252 13 7 4.1287 -4.9282 -3.0666 14 6 3.7652 -5.9605 -3.8532 15 8 4.3027 -7.0443 -3.7216 16 6 2.7240 -5.7779 -4.8656 17 1 2.1900 -4.8413 -4.9281 18 6 2.4205 -6.8177 -5.7533 19 7 3.0664 -7.9511 -5.6774 20 14 1.0922 -6.5844 -7.0458 21 1 0.9641 -7.8241 -7.8533 22 1 -0.2021 -6.2930 -6.3785 23 1 1.4581 -5.4510 -7.9327 24 6 3.4156 -3.6452 -3.1391 25 6 2.9170 -3.2865 -1.7290 26 6 2.2057 -1.1942 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5142 30 1 1.6619 2.1273 -0.0004 31 1 4.0804 -5.4801 -0.3579 32 1 5.6050 -4.6105 -0.0441 33 1 5.6114 -6.0915 -2.1330 34 1 6.0536 -4.3873 -2.4143 35 1 2.8564 -8.6711 -6.2925 36 1 4.0926 -2.8703 -3.4989 37 1 2.5668 -3.7363 -3.8168 38 1 2.1125 -3.9627 -1.4398 39 1 2.5547 -2.2585 -1.7211 40 1 1.6850 -2.1404 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879169980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:30 Heat of formation + Delta-G solvation = -44.742549 kcal Electronic energy + Delta-G solvation = -26954.687540 eV Core-core repulsion = 22988.025120 eV Total energy + Delta-G solvation = -3966.662419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08399 -40.70922 -39.57447 -37.83675 -37.50168 -35.10122 -34.64258 -34.41806 -33.57240 -32.10087 -29.19646 -28.16392 -27.94106 -25.76304 -24.99146 -23.86517 -23.21660 -21.56945 -20.20690 -18.91186 -18.39657 -18.27226 -17.86252 -17.48926 -17.11824 -16.43964 -16.18969 -15.85205 -15.80159 -15.54324 -15.32236 -15.02064 -14.56217 -14.44245 -14.29347 -13.96191 -13.63863 -13.55424 -13.44984 -13.14424 -12.91040 -12.87767 -12.67979 -12.57523 -12.44117 -12.36815 -12.26422 -12.01859 -11.99903 -11.38067 -10.94146 -10.89643 -10.63013 -10.15842 -9.87085 -9.79277 -9.03735 -8.27477 -6.82852 -0.54674 -0.10432 0.70316 1.43808 1.45457 1.47479 1.58305 1.72788 2.25721 2.44070 2.48289 2.77306 3.08859 3.42920 3.57371 3.60200 3.73802 3.87959 3.90756 3.93872 4.06262 4.15995 4.28282 4.40922 4.49486 4.59236 4.62499 4.70036 4.71603 4.83171 4.93131 5.00778 5.12535 5.19106 5.29121 5.40905 5.49297 5.70280 6.10955 6.16775 6.34312 6.50762 6.89281 6.89616 7.39214 8.46219 8.68142 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.003421 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.546895 B = 8183.925545 C = 9394.783638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 C 0.137 3.863 4 N -0.496 5.496 5 C 0.190 3.810 6 Cl -0.029 7.029 7 C -0.171 4.171 8 C 0.561 3.439 9 O -0.553 6.553 10 N -0.596 5.596 11 C 0.114 3.886 12 C 0.109 3.891 13 N -0.644 5.644 14 C 0.542 3.458 15 O -0.630 6.630 16 C -0.565 4.565 17 H 0.101 0.899 18 C 0.030 3.970 19 N -0.824 5.824 20 Si 0.994 3.006 21 H -0.281 1.281 22 H -0.248 1.248 23 H -0.254 1.254 24 C 0.105 3.895 25 C 0.091 3.909 26 C -0.038 4.038 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.273 0.727 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 19.511 9.855 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.021 4.021 4 N -0.207 5.207 5 C 0.026 3.974 6 Cl -0.001 7.001 7 C -0.178 4.178 8 C 0.349 3.651 9 O -0.432 6.432 10 N -0.328 5.328 11 C -0.009 4.009 12 C -0.016 4.016 13 N -0.381 5.381 14 C 0.349 3.651 15 O -0.517 6.517 16 C -0.601 4.601 17 H 0.119 0.881 18 C -0.186 4.186 19 N -0.453 5.453 20 Si 0.813 3.187 21 H -0.206 1.206 22 H -0.171 1.171 23 H -0.178 1.178 24 C -0.019 4.019 25 C -0.032 4.032 26 C -0.063 4.063 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.223 0.777 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.944 19.490 10.240 23.763 hybrid contribution 0.189 -1.208 -0.576 1.351 sum -8.755 18.282 9.663 22.456 Atomic orbital electron populations 1.20903 0.85989 1.05465 1.04382 1.21357 1.00181 0.92197 0.98468 1.23551 0.87060 1.00237 0.91211 1.67149 1.10058 1.29216 1.14239 1.21683 0.87930 0.89252 0.98530 1.98434 1.06977 1.98546 1.96122 1.20482 0.95810 0.92416 1.09083 1.18259 0.83917 0.83011 0.79929 1.90787 1.27433 1.81988 1.42959 1.47987 1.33974 1.12121 1.38711 1.21875 0.97867 0.84169 0.96995 1.21514 0.89795 1.01356 0.88904 1.48037 1.34666 1.13562 1.41822 1.18724 0.83475 0.81926 0.81022 1.90559 1.60470 1.27639 1.73076 1.21457 1.20661 1.02095 1.15872 0.88122 1.26988 0.98338 0.93503 0.99722 1.70189 1.37251 1.04368 1.33518 0.85119 0.78035 0.78451 0.77055 1.20648 1.17117 1.17841 1.22108 0.97967 0.84843 0.97016 1.22742 0.88296 1.04065 0.88113 1.22089 0.90184 1.01355 0.92721 0.89067 0.88579 0.89663 0.77659 0.90832 0.88329 0.91135 0.93051 0.91699 0.92797 0.87260 0.89156 0.86375 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.38 10.03 71.24 0.71 0.33 16 2 C -0.12 -1.30 5.89 -19.81 -0.12 -1.41 16 3 C 0.14 1.79 10.85 84.71 0.92 2.71 16 4 N -0.50 -10.85 10.33 -185.60 -1.92 -12.76 16 5 C 0.19 4.91 7.30 85.05 0.62 5.53 16 6 Cl -0.03 -0.85 27.08 -2.72 -0.07 -0.93 16 7 C -0.17 -4.10 5.09 -19.97 -0.10 -4.20 16 8 C 0.56 16.59 6.96 86.76 0.60 17.19 16 9 O -0.55 -19.82 14.86 -3.88 -0.06 -19.87 16 10 N -0.60 -17.08 2.95 -820.66 -2.42 -19.50 16 11 C 0.11 3.72 6.60 86.42 0.57 4.29 16 12 C 0.11 4.30 6.60 86.42 0.57 4.87 16 13 N -0.64 -27.77 2.94 -822.24 -2.42 -30.19 16 14 C 0.54 29.93 7.62 86.36 0.66 30.58 16 15 O -0.63 -41.05 14.45 -4.33 -0.06 -41.12 16 16 C -0.56 -29.55 8.86 24.83 0.22 -29.33 16 17 H 0.10 4.49 5.66 -2.91 -0.02 4.48 16 18 C 0.03 1.57 5.50 85.30 0.47 2.03 16 19 N -0.82 -48.83 11.84 21.83 0.26 -48.58 16 20 Si 0.99 38.09 29.56 68.60 2.03 40.12 16 21 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 23 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 24 C 0.10 3.36 6.51 86.56 0.56 3.92 16 25 C 0.09 2.20 5.24 86.56 0.45 2.65 16 26 C -0.04 -0.59 7.18 22.73 0.16 -0.43 16 27 H 0.09 0.18 8.14 -2.39 -0.02 0.17 16 28 H 0.10 0.03 8.09 -2.39 -0.02 0.01 16 29 H 0.08 0.24 8.09 -2.38 -0.02 0.22 16 30 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.10 3.16 6.99 -2.39 -0.02 3.14 16 33 H 0.07 3.17 6.99 -2.39 -0.02 3.15 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 3.46 5.34 -2.39 -0.01 3.44 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 2.13 4.68 -2.39 -0.01 2.12 16 40 H 0.17 2.00 6.82 -2.91 -0.02 1.98 16 Total: -1.00 -81.50 345.29 2.75 -78.76 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.10 Total: 15.31 kcal Atomic # 6 Polarization: 32.44 SS G_CDS: 6.31 Total: 38.75 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -6.50 Total: -111.02 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -0.12 Total: -60.99 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.93 kcal Total: -81.50 2.75 -78.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879169980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.014 kcal (2) G-P(sol) polarization free energy of solvation -81.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds