Wall clock time and date at job start Tue Mar 31 2020 19:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 H 1.09001 * 109.47096 * 304.99952 * 3 2 1 5 5 O 1.42904 * 109.46869 * 64.99418 * 3 2 1 6 6 C 1.50694 * 109.47288 * 184.99255 * 3 2 1 7 7 C 1.35349 * 126.74973 * 125.24281 * 6 3 2 8 8 N 1.35308 * 106.17695 * 180.12837 * 7 6 3 9 9 C 1.46500 * 125.87234 * 179.90369 * 8 7 6 10 10 C 1.50703 * 109.47056 * 124.71639 * 9 8 7 11 11 C 1.38112 * 120.02888 * 265.00413 * 10 9 8 12 12 C 1.38394 * 120.05623 * 179.97438 * 11 10 9 13 13 Cl 1.73593 * 119.94443 * 179.97438 * 12 11 10 14 14 C 1.38434 * 120.11232 * 0.02562 * 12 11 10 15 15 C 1.38078 * 120.05306 * 359.95645 * 14 12 11 16 16 C 1.38861 * 120.02807 * 84.73038 * 10 9 8 17 17 O 1.35767 * 120.05369 * 0.02562 * 16 10 9 18 18 C 1.34826 * 116.99685 * 174.15156 * 17 16 10 19 19 H 1.08000 * 120.00030 * 5.07540 * 18 17 16 20 20 C 1.38653 * 119.99856 * 185.07286 * 18 17 16 21 21 N 1.31553 * 119.99793 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99890 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47419 * 89.99916 * 22 20 18 24 24 H 1.48502 * 109.47030 * 209.99926 * 22 20 18 25 25 H 1.48504 * 109.47139 * 329.99855 * 22 20 18 26 26 N 1.28720 * 108.26260 * 359.64472 * 8 7 6 27 27 N 1.28630 * 110.17861 * 0.22233 * 26 8 7 28 28 H 1.08993 * 109.47092 * 300.00272 * 1 2 3 29 29 H 1.09000 * 109.46485 * 60.00421 * 1 2 3 30 30 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47577 * 239.99943 * 2 1 3 32 32 H 1.09000 * 109.46485 * 119.99579 * 2 1 3 33 33 H 0.96703 * 114.00054 * 60.00506 * 5 3 2 34 34 H 1.08000 * 126.91560 * 0.02562 * 7 6 3 35 35 H 1.08994 * 109.47460 * 244.71598 * 9 8 7 36 36 H 1.09001 * 109.46845 * 4.72241 * 9 8 7 37 37 H 1.07996 * 119.97231 * 359.97306 * 11 10 9 38 38 H 1.07990 * 119.97380 * 179.97438 * 14 12 11 39 39 H 1.07999 * 120.02369 * 180.02562 * 15 14 12 40 40 H 0.97001 * 119.99789 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5419 1.4443 -0.1236 7 6 4.2771 2.0965 -1.0543 8 7 5.5710 1.8102 -0.7811 9 6 6.7339 2.2955 -1.5284 10 6 7.6822 2.9908 -0.5859 11 6 7.6226 4.3621 -0.4324 12 6 8.4929 5.0011 0.4334 13 17 8.4158 6.7249 0.6236 14 6 9.4255 4.2682 1.1471 15 6 9.4889 2.8970 0.9975 16 6 8.6130 2.2527 0.1332 17 8 8.6702 0.9041 -0.0122 18 6 9.6732 0.2623 0.6203 19 1 10.3359 0.8088 1.2751 20 6 9.8538 -1.0992 0.4303 21 7 10.8327 -1.7253 1.0470 22 14 8.7080 -2.0441 -0.7027 23 1 9.2550 -2.0309 -2.0832 24 1 8.5908 -3.4471 -0.2301 25 1 7.3672 -1.4057 -0.6954 26 7 5.6049 1.0426 0.2516 27 7 4.4111 0.8057 0.6678 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0141 1.6543 2.0139 34 1 3.9056 2.7188 -1.8550 35 1 7.2413 1.4530 -1.9983 36 1 6.4058 2.9963 -2.2961 37 1 6.8962 4.9361 -0.9884 38 1 10.1037 4.7692 1.8218 39 1 10.2163 2.3256 1.5548 40 1 10.9593 -2.6777 0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881302594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:47 Heat of formation + Delta-G solvation = 32.723228 kcal Electronic energy + Delta-G solvation = -26574.888222 eV Core-core repulsion = 22611.584971 eV Total energy + Delta-G solvation = -3963.303251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99432 -39.66159 -37.77263 -37.16507 -35.89541 -34.55396 -32.89922 -32.59380 -31.16443 -30.99289 -29.29566 -26.86877 -26.21669 -25.45422 -22.73746 -22.00521 -21.89834 -21.31987 -20.35317 -18.17730 -17.79253 -17.23837 -16.40464 -16.09432 -15.67882 -15.55981 -15.26005 -15.02057 -14.45106 -14.37587 -14.07786 -13.94692 -13.27768 -13.04864 -12.90197 -12.74476 -12.62295 -12.44773 -12.39601 -12.25554 -11.60993 -11.55403 -11.21036 -11.14399 -11.08395 -10.96385 -10.70285 -10.65249 -10.54530 -10.31932 -10.13775 -9.86021 -9.57117 -9.02593 -9.00861 -8.67634 -7.58464 -6.61448 -4.26699 1.47433 1.80739 1.89493 2.58912 2.73502 2.77491 3.11164 3.15906 3.34514 4.08445 4.11130 4.30525 4.44480 4.51350 4.60509 4.77851 4.86129 4.90865 4.92973 4.97469 5.20581 5.26668 5.40233 5.41346 5.50356 5.56144 5.65511 5.81908 5.85988 5.95534 6.05742 6.13568 6.19574 6.29410 6.30203 6.52596 6.64481 6.82879 6.86529 7.17686 7.52261 7.56406 7.78920 8.72052 8.84824 9.27253 10.44580 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.004928 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.003795 B = 5680.119295 C = 8795.826853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.202 3.798 4 H 0.109 0.891 5 O -0.556 6.556 6 C -0.071 4.071 7 C -0.049 4.049 8 N -0.277 5.277 9 C 0.174 3.826 10 C -0.199 4.199 11 C -0.037 4.037 12 C -0.127 4.127 13 Cl -0.099 7.099 14 C -0.046 4.046 15 C -0.212 4.212 16 C 0.192 3.808 17 O -0.184 6.184 18 C -0.389 4.389 19 H 0.110 0.890 20 C 0.073 3.927 21 N -0.865 5.865 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.280 1.280 25 H -0.250 1.250 26 N -0.039 5.039 27 N -0.275 5.275 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.382 0.618 34 H 0.185 0.815 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 8.338 -6.268 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.141 3.859 4 H 0.127 0.873 5 O -0.361 6.361 6 C -0.209 4.209 7 C -0.200 4.200 8 N -0.071 5.071 9 C 0.055 3.945 10 C -0.201 4.201 11 C -0.057 4.057 12 C -0.154 4.154 13 Cl -0.071 7.071 14 C -0.065 4.065 15 C -0.231 4.231 16 C 0.136 3.864 17 O -0.085 6.085 18 C -0.464 4.464 19 H 0.127 0.873 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.722 3.278 23 H -0.200 1.200 24 H -0.205 1.205 25 H -0.173 1.173 26 N -0.020 5.020 27 N -0.142 5.142 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.230 0.770 34 H 0.202 0.798 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.175 7.674 -5.787 15.512 hybrid contribution -0.323 -0.062 -0.806 0.871 sum -12.498 7.612 -6.594 16.051 Atomic orbital electron populations 1.21714 0.95080 1.01468 1.02211 1.22167 0.96434 0.96607 1.03634 1.20011 0.84260 0.93410 0.88191 0.87340 1.86509 1.76113 1.57658 1.15863 1.22726 0.98603 1.02358 0.97254 1.23335 0.84103 1.07256 1.05297 1.47827 1.07078 1.31332 1.20832 1.20689 0.82466 0.99790 0.91598 1.18433 1.02778 0.92296 1.06623 1.20356 0.96706 0.92431 0.96193 1.20241 1.04666 0.83298 1.07188 1.98295 1.98302 1.13186 1.97272 1.20785 0.95784 0.93357 0.96572 1.21246 1.03938 0.93879 1.04074 1.18793 0.92097 0.83810 0.91745 1.83594 1.47175 1.14165 1.63605 1.20801 1.06764 0.92710 1.26092 0.87283 1.24445 0.96284 0.95548 0.96994 1.69628 1.28837 1.11131 1.40427 0.86276 0.82375 0.79060 0.80061 1.19965 1.20509 1.17323 1.78643 1.16118 1.07941 0.99249 1.75065 0.95266 1.20332 1.23584 0.92015 0.92869 0.92824 0.91179 0.90729 0.77018 0.79804 0.87361 0.87404 0.85826 0.85833 0.83686 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.15 -1.59 5.59 -26.73 -0.15 -1.73 16 3 C 0.20 2.31 3.47 -27.89 -0.10 2.21 16 4 H 0.11 1.01 8.12 -51.93 -0.42 0.59 16 5 O -0.56 -6.83 12.86 -35.23 -0.45 -7.28 16 6 C -0.07 -1.04 6.10 -82.78 -0.50 -1.54 16 7 C -0.05 -0.65 11.49 -17.05 -0.20 -0.85 16 8 N -0.28 -4.56 3.43 -62.44 -0.21 -4.78 16 9 C 0.17 2.54 6.30 -5.19 -0.03 2.50 16 10 C -0.20 -3.41 5.27 -104.44 -0.55 -3.96 16 11 C -0.04 -0.58 9.46 -39.57 -0.37 -0.95 16 12 C -0.13 -2.04 6.32 -39.45 -0.25 -2.29 16 13 Cl -0.10 -1.40 28.95 -51.86 -1.50 -2.90 16 14 C -0.05 -0.78 9.82 -39.57 -0.39 -1.17 16 15 C -0.21 -4.18 9.17 -39.40 -0.36 -4.54 16 16 C 0.19 3.97 6.60 -39.11 -0.26 3.71 16 17 O -0.18 -4.37 7.73 0.01 0.00 -4.37 16 18 C -0.39 -10.16 9.95 30.89 0.31 -9.85 16 19 H 0.11 2.90 5.44 -52.49 -0.29 2.62 16 20 C 0.07 1.95 5.49 -17.52 -0.10 1.85 16 21 N -0.86 -23.81 13.96 55.48 0.77 -23.03 16 22 Si 0.90 20.84 28.62 -169.99 -4.86 15.98 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 26 N -0.04 -0.81 12.91 60.35 0.78 -0.03 16 27 N -0.28 -5.15 12.40 33.29 0.41 -4.74 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.38 4.19 9.04 45.56 0.41 4.60 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.67 7.70 -51.93 -0.40 1.27 16 36 H 0.11 1.05 7.98 -51.93 -0.41 0.64 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.15 2.98 5.64 -52.49 -0.30 2.69 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -30.52 363.82 -6.08 -36.59 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.91 Total: 6.59 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.59 Total: -17.51 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 1.75 Total: -32.58 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.45 Total: -11.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.98 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.50 Total: -2.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.52 -6.08 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881302594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.318 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds