Wall clock time and date at job start Tue Mar 31 2020 19:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 H 1.09001 * 109.47096 * 304.99952 * 3 2 1 5 5 O 1.42904 * 109.46869 * 64.99418 * 3 2 1 6 6 C 1.50694 * 109.47288 * 184.99255 * 3 2 1 7 7 C 1.35349 * 126.74973 * 125.24281 * 6 3 2 8 8 N 1.35308 * 106.17695 * 180.12837 * 7 6 3 9 9 C 1.46500 * 125.87234 * 179.90369 * 8 7 6 10 10 C 1.50703 * 109.47056 * 124.71639 * 9 8 7 11 11 C 1.38112 * 120.02888 * 265.00413 * 10 9 8 12 12 C 1.38394 * 120.05623 * 179.97438 * 11 10 9 13 13 Cl 1.73593 * 119.94443 * 179.97438 * 12 11 10 14 14 C 1.38434 * 120.11232 * 0.02562 * 12 11 10 15 15 C 1.38078 * 120.05306 * 359.95645 * 14 12 11 16 16 C 1.38861 * 120.02807 * 84.73038 * 10 9 8 17 17 O 1.35767 * 120.05369 * 0.02562 * 16 10 9 18 18 C 1.34826 * 116.99685 * 174.15156 * 17 16 10 19 19 H 1.08000 * 120.00030 * 5.07540 * 18 17 16 20 20 C 1.38653 * 119.99856 * 185.07286 * 18 17 16 21 21 N 1.31553 * 119.99793 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99890 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47419 * 89.99916 * 22 20 18 24 24 H 1.48502 * 109.47030 * 209.99926 * 22 20 18 25 25 H 1.48504 * 109.47139 * 329.99855 * 22 20 18 26 26 N 1.28720 * 108.26260 * 359.64472 * 8 7 6 27 27 N 1.28630 * 110.17861 * 0.22233 * 26 8 7 28 28 H 1.08993 * 109.47092 * 300.00272 * 1 2 3 29 29 H 1.09000 * 109.46485 * 60.00421 * 1 2 3 30 30 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47577 * 239.99943 * 2 1 3 32 32 H 1.09000 * 109.46485 * 119.99579 * 2 1 3 33 33 H 0.96703 * 114.00054 * 60.00506 * 5 3 2 34 34 H 1.08000 * 126.91560 * 0.02562 * 7 6 3 35 35 H 1.08994 * 109.47460 * 244.71598 * 9 8 7 36 36 H 1.09001 * 109.46845 * 4.72241 * 9 8 7 37 37 H 1.07996 * 119.97231 * 359.97306 * 11 10 9 38 38 H 1.07990 * 119.97380 * 179.97438 * 14 12 11 39 39 H 1.07999 * 120.02369 * 180.02562 * 15 14 12 40 40 H 0.97001 * 119.99789 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5419 1.4443 -0.1236 7 6 4.2771 2.0965 -1.0543 8 7 5.5710 1.8102 -0.7811 9 6 6.7339 2.2955 -1.5284 10 6 7.6822 2.9908 -0.5859 11 6 7.6226 4.3621 -0.4324 12 6 8.4929 5.0011 0.4334 13 17 8.4158 6.7249 0.6236 14 6 9.4255 4.2682 1.1471 15 6 9.4889 2.8970 0.9975 16 6 8.6130 2.2527 0.1332 17 8 8.6702 0.9041 -0.0122 18 6 9.6732 0.2623 0.6203 19 1 10.3359 0.8088 1.2751 20 6 9.8538 -1.0992 0.4303 21 7 10.8327 -1.7253 1.0470 22 14 8.7080 -2.0441 -0.7027 23 1 9.2550 -2.0309 -2.0832 24 1 8.5908 -3.4471 -0.2301 25 1 7.3672 -1.4057 -0.6954 26 7 5.6049 1.0426 0.2516 27 7 4.4111 0.8057 0.6678 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0141 1.6543 2.0139 34 1 3.9056 2.7188 -1.8550 35 1 7.2413 1.4530 -1.9983 36 1 6.4058 2.9963 -2.2961 37 1 6.8962 4.9361 -0.9884 38 1 10.1037 4.7692 1.8218 39 1 10.2163 2.3256 1.5548 40 1 10.9593 -2.6777 0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881302594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:46 Heat of formation + Delta-G solvation = 11.639673 kcal Electronic energy + Delta-G solvation = -26575.802474 eV Core-core repulsion = 22611.584971 eV Total energy + Delta-G solvation = -3964.217503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.17651 -41.18429 -38.75841 -38.60486 -37.20134 -35.79261 -34.50348 -33.74964 -32.50692 -32.05799 -30.76549 -28.16127 -27.29255 -27.09867 -23.98930 -23.31624 -23.00429 -22.58427 -21.49803 -19.95104 -19.25512 -18.45075 -17.60033 -17.24876 -16.96978 -16.76794 -16.50134 -16.03690 -15.96183 -15.77905 -15.56176 -15.26893 -14.56031 -14.39490 -14.24357 -14.07550 -13.97433 -13.90707 -13.33072 -13.10098 -12.95399 -12.89904 -12.72985 -12.59141 -12.13868 -12.02827 -11.95916 -11.94261 -11.83433 -11.72745 -11.48002 -11.08108 -10.94748 -10.91600 -10.14760 -10.06123 -9.11237 -8.56272 -6.26085 0.09778 0.35980 0.77246 1.25008 1.25590 1.29276 1.48807 1.55310 1.63998 2.22372 2.60298 2.91196 2.99880 3.31807 3.53574 3.61667 3.69822 3.75205 3.99715 4.09182 4.13703 4.18313 4.27723 4.34244 4.36292 4.56829 4.64128 4.69849 4.85625 4.87494 4.97679 5.09840 5.13360 5.18380 5.22044 5.36084 5.38434 5.45239 5.61999 5.63398 5.72351 5.98456 6.67140 6.78752 7.47159 7.64076 8.54690 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.004928 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.003795 B = 5680.119295 C = 8795.826853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.206 3.794 4 H 0.140 0.860 5 O -0.564 6.564 6 C -0.082 4.082 7 C -0.026 4.026 8 N -0.280 5.280 9 C 0.168 3.832 10 C -0.185 4.185 11 C -0.031 4.031 12 C -0.115 4.115 13 Cl -0.070 7.070 14 C -0.048 4.048 15 C -0.234 4.234 16 C 0.165 3.835 17 O -0.209 6.209 18 C -0.392 4.392 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.958 3.042 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.109 5.109 27 N -0.306 5.306 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.383 0.617 34 H 0.242 0.758 35 H 0.094 0.906 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.871 11.762 -9.000 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 C 0.145 3.855 4 H 0.158 0.842 5 O -0.370 6.370 6 C -0.222 4.222 7 C -0.177 4.177 8 N -0.074 5.074 9 C 0.049 3.951 10 C -0.187 4.187 11 C -0.050 4.050 12 C -0.142 4.142 13 Cl -0.041 7.041 14 C -0.067 4.067 15 C -0.253 4.253 16 C 0.112 3.888 17 O -0.113 6.113 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.781 3.219 23 H -0.184 1.184 24 H -0.203 1.203 25 H -0.189 1.189 26 N -0.088 5.088 27 N -0.173 5.173 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.188 0.812 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.265 11.148 -8.511 20.730 hybrid contribution 0.485 -0.631 0.043 0.797 sum -14.780 10.517 -8.468 20.019 Atomic orbital electron populations 1.21671 0.93438 1.02011 1.02767 1.22116 0.97750 0.96144 1.02510 1.20272 0.82466 0.94064 0.88725 0.84235 1.86487 1.76116 1.58030 1.16365 1.23390 0.99849 1.01926 0.97039 1.24214 0.82372 1.05830 1.05289 1.47884 1.08509 1.30794 1.20190 1.21015 0.81977 1.00456 0.91671 1.18858 1.01472 0.93002 1.05374 1.20826 0.96786 0.91712 0.95631 1.20506 1.03220 0.84889 1.05563 1.98318 1.98147 1.10547 1.97119 1.20977 0.96501 0.92239 0.96963 1.21244 1.04166 0.95253 1.04644 1.19414 0.93386 0.83348 0.92636 1.83577 1.47160 1.15561 1.65032 1.20683 1.07191 0.93000 1.25969 0.89673 1.25081 0.97638 0.96359 0.98560 1.69708 1.31120 1.11450 1.43217 0.85387 0.79810 0.77579 0.79147 1.18430 1.20295 1.18858 1.78653 1.17135 1.11030 1.01991 1.74994 0.95827 1.21393 1.25096 0.92386 0.91292 0.92379 0.91389 0.92861 0.76797 0.74189 0.88748 0.81153 0.81386 0.83901 0.86051 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.81 71.98 0.71 -1.43 16 2 C -0.15 -2.87 5.59 30.60 0.17 -2.70 16 3 C 0.21 4.10 3.47 29.85 0.10 4.21 16 4 H 0.14 1.91 8.12 -2.39 -0.02 1.90 16 5 O -0.56 -12.70 12.86 -148.98 -1.92 -14.61 16 6 C -0.08 -2.22 6.10 41.59 0.25 -1.96 16 7 C -0.03 -0.57 11.49 83.49 0.96 0.39 16 8 N -0.28 -8.50 3.43 -351.47 -1.21 -9.71 16 9 C 0.17 4.33 6.30 85.63 0.54 4.87 16 10 C -0.18 -5.92 5.27 -19.74 -0.10 -6.03 16 11 C -0.03 -0.81 9.46 22.28 0.21 -0.60 16 12 C -0.11 -3.30 6.32 22.35 0.14 -3.16 16 13 Cl -0.07 -1.68 28.95 -2.72 -0.08 -1.76 16 14 C -0.05 -1.58 9.82 22.28 0.22 -1.36 16 15 C -0.23 -9.55 9.17 22.39 0.21 -9.35 16 16 C 0.16 6.95 6.60 22.58 0.15 7.10 16 17 O -0.21 -10.40 7.73 -22.90 -0.18 -10.58 16 18 C -0.39 -22.00 9.95 67.92 0.68 -21.32 16 19 H 0.09 5.00 5.44 -2.91 -0.02 4.98 16 20 C 0.02 1.33 5.49 84.83 0.47 1.80 16 21 N -0.92 -53.75 13.96 21.61 0.30 -53.45 16 22 Si 0.96 45.35 28.62 68.60 1.96 47.31 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 26 N -0.11 -4.47 12.91 37.02 0.48 -3.99 16 27 N -0.31 -11.47 12.40 -48.60 -0.60 -12.07 16 28 H 0.06 0.92 7.82 -2.39 -0.02 0.90 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.38 8.20 9.04 -74.06 -0.67 7.53 16 34 H 0.24 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.09 2.76 7.70 -2.39 -0.02 2.74 16 36 H 0.17 2.17 7.98 -2.39 -0.02 2.16 16 37 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.14 4.06 8.06 -2.92 -0.02 4.04 16 39 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 40 H 0.28 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.54 363.82 3.88 -69.65 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.42 Total: 18.75 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.70 Total: -29.54 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.03 Total: -79.22 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -2.09 Total: -25.19 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -73.54 3.88 -69.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881302594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.293 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds