Wall clock time and date at job start Tue Mar 31 2020 19:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.08998 * 109.47024 * 55.00431 * 3 2 1 5 5 O 1.42897 * 109.46897 * 295.00550 * 3 2 1 6 6 C 1.50699 * 109.47060 * 175.00296 * 3 2 1 7 7 C 1.35349 * 126.74810 * 125.29701 * 6 3 2 8 8 N 1.35318 * 106.16986 * 180.12569 * 7 6 3 9 9 C 1.46507 * 125.86460 * 179.90684 * 8 7 6 10 10 C 1.50697 * 109.47102 * 124.71189 * 9 8 7 11 11 C 1.38106 * 120.03142 * 265.00068 * 10 9 8 12 12 C 1.38389 * 120.06056 * 180.02562 * 11 10 9 13 13 Cl 1.73598 * 119.94864 * 179.97438 * 12 11 10 14 14 C 1.38433 * 120.10688 * 359.97438 * 12 11 10 15 15 C 1.38061 * 120.06091 * 359.97438 * 14 12 11 16 16 C 1.38859 * 120.02727 * 85.25048 * 10 9 8 17 17 O 1.35765 * 120.05435 * 0.02579 * 16 10 9 18 18 C 1.34827 * 116.99596 * 174.62920 * 17 16 10 19 19 H 1.07994 * 120.00467 * 5.06318 * 18 17 16 20 20 C 1.38651 * 119.99996 * 185.06556 * 18 17 16 21 21 N 1.31563 * 119.99469 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00346 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46718 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47337 * 119.99739 * 22 20 18 25 25 H 1.48497 * 109.46987 * 239.99879 * 22 20 18 26 26 N 1.28705 * 108.26747 * 359.63746 * 8 7 6 27 27 N 1.28637 * 110.17802 * 0.23171 * 26 8 7 28 28 H 1.09002 * 109.46531 * 299.99622 * 1 2 3 29 29 H 1.08998 * 109.47099 * 59.99855 * 1 2 3 30 30 H 1.09004 * 109.46668 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46824 * 240.00592 * 2 1 3 32 32 H 1.08995 * 109.47584 * 120.00283 * 2 1 3 33 33 H 0.96707 * 114.00477 * 299.99331 * 5 3 2 34 34 H 1.07997 * 126.91810 * 0.02562 * 7 6 3 35 35 H 1.09006 * 109.47213 * 4.71520 * 9 8 7 36 36 H 1.08994 * 109.47153 * 244.71464 * 9 8 7 37 37 H 1.08007 * 119.97048 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.97060 * 179.97438 * 14 12 11 39 39 H 1.08001 * 120.03433 * 180.02562 * 15 14 12 40 40 H 0.97008 * 119.99309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5420 1.4443 0.1238 7 6 4.4225 2.0460 -0.7097 8 7 5.6529 1.7816 -0.2126 9 6 6.9247 2.2291 -0.7860 10 6 7.7093 2.9814 0.2577 11 6 7.6318 4.3589 0.3211 12 6 8.3524 5.0504 1.2790 13 17 8.2534 6.7819 1.3556 14 6 9.1522 4.3636 2.1763 15 6 9.2324 2.9866 2.1179 16 6 8.5149 2.2907 1.1533 17 8 8.5971 0.9370 1.0895 18 6 9.4805 0.3381 1.9133 19 1 10.0236 0.9234 2.6404 20 6 9.6918 -1.0295 1.8269 21 7 9.0298 -1.7427 0.9415 22 14 10.9152 -1.8596 2.9687 23 1 11.5229 -0.8440 3.8656 24 1 10.2151 -2.8848 3.7836 25 1 11.9807 -2.5098 2.1642 26 7 5.5138 1.0744 0.8537 27 7 4.2668 0.8559 1.0817 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0141 1.6543 -2.0139 34 1 4.1899 2.6199 -1.5945 35 1 6.7299 2.8835 -1.6358 36 1 7.4981 1.3637 -1.1179 37 1 7.0088 4.8970 -0.3781 38 1 9.7140 4.9056 2.9227 39 1 9.8562 2.4512 2.8183 40 1 9.1780 -2.6995 0.8809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881302595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:50 Heat of formation + Delta-G solvation = 31.744109 kcal Electronic energy + Delta-G solvation = -26439.272582 eV Core-core repulsion = 22475.926873 eV Total energy + Delta-G solvation = -3963.345709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.81707 -39.47736 -37.82164 -36.98653 -35.78532 -34.46027 -32.83067 -32.47567 -31.01648 -30.73149 -29.04446 -26.76928 -26.07165 -25.53790 -22.52209 -21.93413 -21.82647 -21.13600 -20.38104 -18.26314 -17.64318 -17.07078 -16.22925 -16.06625 -15.55479 -15.46139 -15.04302 -14.85450 -14.58633 -14.20440 -13.94534 -13.70462 -13.34163 -13.15476 -12.86100 -12.70033 -12.49333 -12.27973 -12.15827 -11.92157 -11.48019 -11.45042 -11.22887 -11.12168 -10.98745 -10.89515 -10.57176 -10.55686 -10.54616 -10.41983 -10.19636 -9.75257 -9.44783 -8.97881 -8.77941 -8.57088 -7.42964 -6.64155 -4.20930 1.60847 1.93669 2.08091 2.68978 2.93025 2.95510 3.03825 3.05300 3.11136 3.81468 4.20355 4.23823 4.45549 4.77815 4.88188 4.94575 4.99708 5.02601 5.06316 5.07502 5.40041 5.40200 5.46235 5.57551 5.66269 5.70658 5.76673 5.93630 5.96606 6.10534 6.21914 6.24898 6.26339 6.40569 6.43243 6.67435 6.70723 6.96016 7.02183 7.10652 7.36739 7.49453 7.77316 8.80030 9.04748 9.41445 10.51413 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.004458 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.721938 B = 6279.933620 C = 9502.012885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.112 0.888 5 O -0.555 6.555 6 C -0.072 4.072 7 C -0.056 4.056 8 N -0.273 5.273 9 C 0.176 3.824 10 C -0.199 4.199 11 C -0.035 4.035 12 C -0.135 4.135 13 Cl -0.103 7.103 14 C -0.045 4.045 15 C -0.224 4.224 16 C 0.182 3.818 17 O -0.143 6.143 18 C -0.393 4.393 19 H 0.096 0.904 20 C 0.047 3.953 21 N -0.844 5.844 22 Si 0.942 3.058 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.275 1.275 26 N -0.031 5.031 27 N -0.277 5.277 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.374 0.626 34 H 0.184 0.816 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 7.163 -5.174 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.140 3.860 4 H 0.129 0.871 5 O -0.359 6.359 6 C -0.211 4.211 7 C -0.207 4.207 8 N -0.067 5.067 9 C 0.056 3.944 10 C -0.202 4.202 11 C -0.055 4.055 12 C -0.162 4.162 13 Cl -0.075 7.075 14 C -0.064 4.064 15 C -0.244 4.244 16 C 0.124 3.876 17 O -0.042 6.042 18 C -0.468 4.468 19 H 0.113 0.887 20 C -0.160 4.160 21 N -0.476 5.476 22 Si 0.766 3.234 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.200 1.200 26 N -0.011 5.011 27 N -0.145 5.145 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.222 0.778 34 H 0.201 0.799 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.252 6.521 -3.856 10.487 hybrid contribution 0.645 0.031 -0.635 0.906 sum -6.607 6.552 -4.491 10.332 Atomic orbital electron populations 1.21714 0.95132 1.01428 1.02168 1.22156 0.96409 0.96374 1.03718 1.19909 0.85081 0.93503 0.87486 0.87067 1.86574 1.76179 1.57549 1.15612 1.22679 0.98285 1.03701 0.96404 1.23176 0.84439 1.08413 1.04684 1.47797 1.07665 1.33164 1.18033 1.20666 0.79770 1.00167 0.93774 1.18424 1.06951 0.92101 1.02687 1.20364 0.96597 0.92154 0.96387 1.20161 1.09023 0.82722 1.04322 1.98284 1.98046 1.12785 1.98370 1.20714 0.95713 0.93683 0.96299 1.21122 1.06618 0.93396 1.03258 1.19057 0.91748 0.85087 0.91717 1.83986 1.52607 1.12657 1.54967 1.21443 1.18746 0.91562 1.15072 0.88696 1.25323 0.97898 0.95317 0.97474 1.70046 1.37981 1.07532 1.32049 0.85625 0.79093 0.79464 0.79178 1.18905 1.19882 1.20005 1.78695 1.12235 1.08727 1.01474 1.75098 0.96915 1.20124 1.22315 0.92687 0.92255 0.92847 0.91745 0.89957 0.77834 0.79925 0.87847 0.86893 0.86029 0.86164 0.84324 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.16 0.36 -1.03 16 2 C -0.15 -1.69 5.59 -26.73 -0.15 -1.84 16 3 C 0.20 2.48 3.52 -27.88 -0.10 2.39 16 4 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 5 O -0.56 -5.86 12.34 -35.23 -0.43 -6.30 16 6 C -0.07 -1.14 6.45 -82.78 -0.53 -1.68 16 7 C -0.06 -0.82 10.79 -17.04 -0.18 -1.01 16 8 N -0.27 -4.91 3.43 -62.44 -0.21 -5.12 16 9 C 0.18 2.86 6.31 -5.19 -0.03 2.83 16 10 C -0.20 -3.69 5.26 -104.44 -0.55 -4.24 16 11 C -0.04 -0.59 9.46 -39.57 -0.37 -0.96 16 12 C -0.14 -2.28 6.32 -39.45 -0.25 -2.53 16 13 Cl -0.10 -1.52 28.95 -51.86 -1.50 -3.03 16 14 C -0.04 -0.79 9.82 -39.57 -0.39 -1.18 16 15 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 16 C 0.18 3.97 6.62 -39.10 -0.26 3.71 16 17 O -0.14 -3.65 8.89 0.01 0.00 -3.65 16 18 C -0.39 -10.14 9.49 30.88 0.29 -9.84 16 19 H 0.10 2.27 5.20 -52.49 -0.27 2.00 16 20 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 21 N -0.84 -23.25 13.67 55.48 0.76 -22.50 16 22 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 N -0.03 -0.69 12.92 60.35 0.78 0.09 16 27 N -0.28 -5.65 12.39 33.29 0.41 -5.23 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 33 H 0.37 2.73 8.87 45.56 0.40 3.14 16 34 H 0.18 1.87 7.94 -52.49 -0.42 1.45 16 35 H 0.10 1.19 7.98 -51.93 -0.41 0.77 16 36 H 0.11 2.03 7.68 -51.93 -0.40 1.63 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.14 2.76 5.64 -52.49 -0.30 2.46 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -31.01 363.85 -6.25 -37.27 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.90 Total: 7.62 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.62 Total: -19.13 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 1.74 Total: -32.76 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.43 Total: -9.94 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -1.50 Total: -3.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.01 -6.25 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881302595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.011 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds