Wall clock time and date at job start Tue Mar 31 2020 19:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.08998 * 109.47024 * 55.00431 * 3 2 1 5 5 O 1.42897 * 109.46897 * 295.00550 * 3 2 1 6 6 C 1.50699 * 109.47060 * 175.00296 * 3 2 1 7 7 C 1.35349 * 126.74810 * 125.29701 * 6 3 2 8 8 N 1.35318 * 106.16986 * 180.12569 * 7 6 3 9 9 C 1.46507 * 125.86460 * 179.90684 * 8 7 6 10 10 C 1.50697 * 109.47102 * 124.71189 * 9 8 7 11 11 C 1.38106 * 120.03142 * 265.00068 * 10 9 8 12 12 C 1.38389 * 120.06056 * 180.02562 * 11 10 9 13 13 Cl 1.73598 * 119.94864 * 179.97438 * 12 11 10 14 14 C 1.38433 * 120.10688 * 359.97438 * 12 11 10 15 15 C 1.38061 * 120.06091 * 359.97438 * 14 12 11 16 16 C 1.38859 * 120.02727 * 85.25048 * 10 9 8 17 17 O 1.35765 * 120.05435 * 0.02579 * 16 10 9 18 18 C 1.34827 * 116.99596 * 174.62920 * 17 16 10 19 19 H 1.07994 * 120.00467 * 5.06318 * 18 17 16 20 20 C 1.38651 * 119.99996 * 185.06556 * 18 17 16 21 21 N 1.31563 * 119.99469 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00346 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46718 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47337 * 119.99739 * 22 20 18 25 25 H 1.48497 * 109.46987 * 239.99879 * 22 20 18 26 26 N 1.28705 * 108.26747 * 359.63746 * 8 7 6 27 27 N 1.28637 * 110.17802 * 0.23171 * 26 8 7 28 28 H 1.09002 * 109.46531 * 299.99622 * 1 2 3 29 29 H 1.08998 * 109.47099 * 59.99855 * 1 2 3 30 30 H 1.09004 * 109.46668 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46824 * 240.00592 * 2 1 3 32 32 H 1.08995 * 109.47584 * 120.00283 * 2 1 3 33 33 H 0.96707 * 114.00477 * 299.99331 * 5 3 2 34 34 H 1.07997 * 126.91810 * 0.02562 * 7 6 3 35 35 H 1.09006 * 109.47213 * 4.71520 * 9 8 7 36 36 H 1.08994 * 109.47153 * 244.71464 * 9 8 7 37 37 H 1.08007 * 119.97048 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.97060 * 179.97438 * 14 12 11 39 39 H 1.08001 * 120.03433 * 180.02562 * 15 14 12 40 40 H 0.97008 * 119.99309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5420 1.4443 0.1238 7 6 4.4225 2.0460 -0.7097 8 7 5.6529 1.7816 -0.2126 9 6 6.9247 2.2291 -0.7860 10 6 7.7093 2.9814 0.2577 11 6 7.6318 4.3589 0.3211 12 6 8.3524 5.0504 1.2790 13 17 8.2534 6.7819 1.3556 14 6 9.1522 4.3636 2.1763 15 6 9.2324 2.9866 2.1179 16 6 8.5149 2.2907 1.1533 17 8 8.5971 0.9370 1.0895 18 6 9.4805 0.3381 1.9133 19 1 10.0236 0.9234 2.6404 20 6 9.6918 -1.0295 1.8269 21 7 9.0298 -1.7427 0.9415 22 14 10.9152 -1.8596 2.9687 23 1 11.5229 -0.8440 3.8656 24 1 10.2151 -2.8848 3.7836 25 1 11.9807 -2.5098 2.1642 26 7 5.5138 1.0744 0.8537 27 7 4.2668 0.8559 1.0817 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0141 1.6543 -2.0139 34 1 4.1899 2.6199 -1.5945 35 1 6.7299 2.8835 -1.6358 36 1 7.4981 1.3637 -1.1179 37 1 7.0088 4.8970 -0.3781 38 1 9.7140 4.9056 2.9227 39 1 9.8562 2.4512 2.8183 40 1 9.1780 -2.6995 0.8809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881302595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:49 Heat of formation + Delta-G solvation = 10.301653 kcal Electronic energy + Delta-G solvation = -26440.202397 eV Core-core repulsion = 22475.926873 eV Total energy + Delta-G solvation = -3964.275524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.15268 -41.03927 -38.76881 -38.52564 -37.15322 -35.80863 -34.31242 -33.70805 -32.43396 -31.95479 -30.55568 -28.10763 -27.39458 -27.09461 -23.89807 -23.33030 -23.02947 -22.41339 -21.64837 -19.96620 -19.07627 -18.42928 -17.51784 -17.20849 -16.90776 -16.72096 -16.42648 -16.17307 -15.92159 -15.63647 -15.39352 -15.12599 -14.78047 -14.36927 -14.07958 -13.91112 -13.87222 -13.65074 -13.32818 -12.99671 -12.89636 -12.85117 -12.70792 -12.53146 -12.13957 -11.96124 -11.94194 -11.90001 -11.87612 -11.71880 -11.39387 -11.16433 -10.89184 -10.78622 -10.05769 -10.00252 -9.00473 -8.50003 -6.15119 0.16303 0.43765 0.80717 1.30165 1.34577 1.40988 1.50912 1.59899 1.67682 2.13634 2.67789 3.09547 3.25881 3.30536 3.42357 3.64015 3.75954 3.89865 4.02436 4.08991 4.13083 4.18592 4.32433 4.35757 4.43770 4.57677 4.73053 4.76968 4.89510 4.92227 4.96142 5.06844 5.10665 5.23267 5.26041 5.30971 5.36446 5.44939 5.49710 5.75245 5.84323 5.94196 6.79440 6.94594 7.67625 7.68917 8.70449 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.004458 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.721938 B = 6279.933620 C = 9502.012885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 C 0.212 3.788 4 H 0.110 0.890 5 O -0.551 6.551 6 C -0.080 4.080 7 C -0.034 4.034 8 N -0.275 5.275 9 C 0.173 3.827 10 C -0.194 4.194 11 C -0.031 4.031 12 C -0.124 4.124 13 Cl -0.073 7.073 14 C -0.045 4.045 15 C -0.242 4.242 16 C 0.155 3.845 17 O -0.187 6.187 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.010 4.010 21 N -0.903 5.903 22 Si 1.010 2.990 23 H -0.251 1.251 24 H -0.275 1.275 25 H -0.267 1.267 26 N -0.102 5.102 27 N -0.311 5.311 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.391 0.609 34 H 0.237 0.763 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 10.532 -6.517 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.151 3.849 4 H 0.127 0.873 5 O -0.357 6.357 6 C -0.220 4.220 7 C -0.185 4.185 8 N -0.068 5.068 9 C 0.054 3.946 10 C -0.197 4.197 11 C -0.050 4.050 12 C -0.151 4.151 13 Cl -0.045 7.045 14 C -0.064 4.064 15 C -0.261 4.261 16 C 0.100 3.900 17 O -0.090 6.090 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.210 4.210 21 N -0.539 5.539 22 Si 0.830 3.170 23 H -0.174 1.174 24 H -0.201 1.201 25 H -0.192 1.192 26 N -0.081 5.081 27 N -0.178 5.178 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.253 0.747 35 H 0.181 0.819 36 H 0.104 0.896 37 H 0.179 0.821 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.349 9.952 -5.188 13.988 hybrid contribution 0.838 -0.556 -0.331 1.059 sum -7.511 9.396 -5.519 13.235 Atomic orbital electron populations 1.21670 0.93331 1.02091 1.02714 1.22098 0.97873 0.95728 1.02613 1.19804 0.82774 0.93909 0.88426 0.87280 1.86561 1.75994 1.57479 1.15622 1.23364 1.00055 1.02949 0.95589 1.23987 0.82609 1.06865 1.05082 1.47854 1.08972 1.32575 1.17446 1.20873 0.79168 0.99944 0.94587 1.18822 1.05678 0.93124 1.02060 1.20767 0.96360 0.91212 0.96695 1.20437 1.07146 0.84460 1.03083 1.98307 1.97866 1.10035 1.98249 1.20970 0.95789 0.92652 0.96941 1.21223 1.06977 0.94726 1.03194 1.19697 0.92747 0.84588 0.92961 1.83993 1.54267 1.14361 1.56349 1.21815 1.19193 0.92207 1.15574 0.88129 1.26403 0.99755 0.95788 0.99040 1.70183 1.41073 1.07594 1.35058 0.84647 0.76767 0.78347 0.77261 1.17438 1.20051 1.19154 1.78709 1.13153 1.11903 1.04317 1.75015 0.97211 1.21239 1.24343 0.92537 0.91231 0.92195 0.91519 0.92494 0.75908 0.74710 0.81890 0.89629 0.82073 0.83625 0.85224 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.81 71.98 0.71 -1.72 16 2 C -0.14 -3.20 5.59 30.60 0.17 -3.03 16 3 C 0.21 4.87 3.52 29.85 0.11 4.98 16 4 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 5 O -0.55 -9.63 12.34 -148.98 -1.84 -11.47 16 6 C -0.08 -2.45 6.45 41.60 0.27 -2.18 16 7 C -0.03 -0.91 10.79 83.49 0.90 -0.01 16 8 N -0.28 -9.68 3.43 -351.46 -1.21 -10.89 16 9 C 0.17 5.43 6.31 85.63 0.54 5.97 16 10 C -0.19 -7.01 5.26 -19.75 -0.10 -7.12 16 11 C -0.03 -0.93 9.46 22.27 0.21 -0.72 16 12 C -0.12 -3.79 6.32 22.35 0.14 -3.65 16 13 Cl -0.07 -1.86 28.95 -2.72 -0.08 -1.93 16 14 C -0.04 -1.49 9.82 22.27 0.22 -1.27 16 15 C -0.24 -9.86 9.17 22.39 0.21 -9.66 16 16 C 0.15 6.95 6.62 22.58 0.15 7.10 16 17 O -0.19 -10.19 8.89 -22.88 -0.20 -10.39 16 18 C -0.41 -22.67 9.49 67.92 0.64 -22.03 16 19 H 0.10 5.12 5.20 -2.91 -0.02 5.11 16 20 C -0.01 -0.55 5.49 84.83 0.47 -0.08 16 21 N -0.90 -53.44 13.67 21.61 0.30 -53.15 16 22 Si 1.01 42.01 29.55 68.60 2.03 44.03 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 N -0.10 -4.67 12.92 37.02 0.48 -4.20 16 27 N -0.31 -13.10 12.39 -48.60 -0.60 -13.71 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.07 7.82 -2.39 -0.02 1.05 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 33 H 0.39 4.07 8.87 -74.05 -0.66 3.41 16 34 H 0.24 3.43 7.94 -2.91 -0.02 3.41 16 35 H 0.16 3.01 7.98 -2.38 -0.02 2.99 16 36 H 0.09 3.19 7.68 -2.39 -0.02 3.18 16 37 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 40 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -74.97 363.85 3.93 -71.04 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.44 Total: 24.06 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 4.62 Total: -33.40 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.03 Total: -81.94 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -2.04 Total: -21.86 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.93 kcal Total: -74.97 3.93 -71.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881302595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.340 kcal (2) G-P(sol) polarization free energy of solvation -74.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds