Wall clock time and date at job start Tue Mar 31 2020 19:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46922 * 2 1 4 4 O 1.42892 * 109.47493 * 119.99839 * 2 1 3 5 5 C 1.50705 * 109.47386 * 240.00436 * 2 1 3 6 6 C 1.35344 * 126.75508 * 184.99903 * 5 2 1 7 7 N 1.35315 * 106.17602 * 179.97438 * 6 5 2 8 8 C 1.46502 * 125.86683 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47146 * 124.99947 * 8 7 6 10 10 C 1.38105 * 120.03268 * 265.00168 * 9 8 7 11 11 C 1.38387 * 120.06069 * 180.02562 * 10 9 8 12 12 Cl 1.73603 * 119.94441 * 179.97438 * 11 10 9 13 13 C 1.38423 * 120.11134 * 359.97438 * 11 10 9 14 14 C 1.38070 * 120.05530 * 359.96372 * 13 11 10 15 15 C 1.38865 * 120.02626 * 84.72268 * 9 8 7 16 16 O 1.35765 * 120.05397 * 0.02562 * 15 9 8 17 17 C 1.34826 * 116.99683 * 174.14483 * 16 15 9 18 18 H 1.08008 * 119.99944 * 5.06617 * 17 16 15 19 19 C 1.38648 * 119.99951 * 185.06376 * 17 16 15 20 20 N 1.31556 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47302 * 60.00490 * 21 19 17 23 23 H 1.48503 * 109.46692 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47388 * 299.99865 * 21 19 17 25 25 N 1.28707 * 108.26395 * 359.97438 * 7 6 5 26 26 N 1.28644 * 110.17972 * 359.72062 * 25 7 6 27 27 H 1.08997 * 109.47295 * 60.00345 * 1 2 3 28 28 H 1.08997 * 109.47155 * 299.99837 * 1 2 3 29 29 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47073 * 60.00112 * 3 2 1 31 31 H 1.08998 * 109.46981 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46854 * 299.99925 * 3 2 1 33 33 H 0.96699 * 114.00594 * 179.97438 * 4 2 1 34 34 H 1.08002 * 126.90978 * 0.03360 * 6 5 2 35 35 H 1.08998 * 109.46769 * 245.00180 * 8 7 6 36 36 H 1.09002 * 109.47153 * 5.00303 * 8 7 6 37 37 H 1.08008 * 119.97150 * 359.97157 * 10 9 8 38 38 H 1.08000 * 119.97531 * 179.97438 * 13 11 10 39 39 H 1.08008 * 120.02882 * 180.02562 * 14 13 11 40 40 H 0.96997 * 119.99774 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0324 -0.7103 -1.2305 6 6 3.3209 -0.9939 -1.5327 7 7 3.2964 -1.6345 -2.7243 8 6 4.4639 -2.1373 -3.4527 9 6 4.2806 -3.6043 -3.7442 10 6 4.8165 -4.5505 -2.8929 11 6 4.6490 -5.8979 -3.1604 12 17 5.3246 -7.0848 -2.0886 13 6 3.9436 -6.3009 -4.2812 14 6 3.4046 -5.3590 -5.1348 15 6 3.5675 -4.0060 -4.8661 16 8 3.0352 -3.0778 -5.7018 17 6 2.4608 -3.5314 -6.8341 18 1 2.3661 -4.5939 -7.0034 19 6 1.9918 -2.6339 -7.7811 20 7 2.1076 -1.3398 -7.5750 21 14 1.1953 -3.2624 -9.3495 22 1 0.0026 -4.0781 -9.0067 23 1 0.7814 -2.1105 -10.1904 24 1 2.1680 -4.0981 -10.0982 25 7 2.0712 -1.7272 -3.1074 26 7 1.2919 -1.1911 -2.2355 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 2.9704 -0.7121 1.2327 34 1 4.1930 -0.7573 -0.9412 35 1 4.5703 -1.5910 -4.3899 36 1 5.3587 -1.9965 -2.8464 37 1 5.3678 -4.2387 -2.0180 38 1 3.8145 -7.3531 -4.4880 39 1 2.8539 -5.6739 -6.0089 40 1 1.7791 -0.7119 -8.2373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881303350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:22 Heat of formation + Delta-G solvation = 14.571440 kcal Electronic energy + Delta-G solvation = -26736.178482 eV Core-core repulsion = 22772.088110 eV Total energy + Delta-G solvation = -3964.090372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.15648 -41.03597 -38.98031 -38.52862 -37.14851 -35.79982 -34.31103 -33.48431 -32.42899 -31.11399 -30.49079 -28.41540 -27.82429 -27.30747 -24.37498 -23.58277 -23.28316 -22.23894 -21.13145 -19.96138 -19.12635 -18.55853 -17.59171 -17.26108 -16.90745 -16.57563 -16.20536 -15.87673 -15.79210 -15.59205 -15.35818 -15.21930 -14.77307 -14.29149 -13.91252 -13.79885 -13.64131 -13.59927 -13.19394 -13.05427 -12.91232 -12.80517 -12.77856 -12.61988 -12.51771 -12.19887 -12.04319 -11.92041 -11.88530 -11.58896 -11.38775 -11.17957 -10.91485 -10.76909 -10.10604 -10.00793 -9.00156 -8.49334 -6.14666 0.16694 0.44335 0.81471 1.30370 1.34314 1.43306 1.48521 1.59884 1.68646 2.14190 2.68124 3.09966 3.26437 3.34950 3.42979 3.62075 3.71874 3.82325 4.01760 4.05789 4.07275 4.18453 4.32658 4.39921 4.44897 4.73491 4.76732 4.83944 4.87663 4.91159 4.94300 5.00989 5.06913 5.21488 5.24497 5.33473 5.36430 5.38799 5.50477 5.75935 5.84723 5.94181 6.87895 6.94836 7.68041 7.70663 8.70584 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007561 B = 0.004776 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3702.239979 B = 5860.819710 C = 8908.066048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.221 3.779 3 C -0.163 4.163 4 O -0.560 6.560 5 C -0.071 4.071 6 C -0.038 4.038 7 N -0.274 5.274 8 C 0.173 3.827 9 C -0.194 4.194 10 C -0.030 4.030 11 C -0.125 4.125 12 Cl -0.073 7.073 13 C -0.045 4.045 14 C -0.243 4.243 15 C 0.153 3.847 16 O -0.186 6.186 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.010 4.010 20 N -0.902 5.902 21 Si 1.009 2.991 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.254 1.254 25 N -0.103 5.103 26 N -0.310 5.310 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.393 0.607 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 0.205 13.965 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.179 3.821 3 C -0.221 4.221 4 O -0.367 6.367 5 C -0.211 4.211 6 C -0.189 4.189 7 N -0.067 5.067 8 C 0.054 3.946 9 C -0.197 4.197 10 C -0.049 4.049 11 C -0.152 4.152 12 Cl -0.045 7.045 13 C -0.064 4.064 14 C -0.262 4.262 15 C 0.099 3.901 16 O -0.088 6.088 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.210 4.210 20 N -0.538 5.538 21 Si 0.829 3.171 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.178 1.178 25 N -0.082 5.082 26 N -0.176 5.176 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.582 -0.013 12.923 14.502 hybrid contribution 0.649 -0.125 -0.664 0.937 sum 7.231 -0.138 12.259 14.233 Atomic orbital electron populations 1.21606 0.92528 1.02018 1.02620 1.19236 0.94626 0.90050 0.78219 1.22406 1.02898 0.93568 1.03250 1.86587 1.28463 1.79981 1.41717 1.23240 0.91276 1.06492 1.00091 1.24069 1.01636 1.03088 0.90129 1.47863 1.07711 1.36006 1.15133 1.20884 0.84474 0.90763 0.98448 1.18837 1.08240 0.95001 0.97625 1.20770 0.96660 0.89861 0.97646 1.20441 1.08154 0.90045 0.96560 1.98306 1.84404 1.57298 1.64443 1.20969 0.93665 1.00074 0.91700 1.21223 1.08719 0.92331 1.03937 1.19720 0.90195 0.89390 0.90824 1.83995 1.63110 1.32397 1.29345 1.21732 1.38623 0.94329 0.94265 0.88202 1.26400 0.97370 0.94966 1.02226 1.70164 1.44676 1.02407 1.36587 0.84778 0.78723 0.78019 0.75583 1.18842 1.19860 1.17769 1.78728 0.88439 1.19945 1.21120 1.75056 1.27813 1.12754 1.02021 0.91696 0.89875 0.93981 0.89548 0.89856 0.92580 0.75724 0.74196 0.89708 0.81666 0.81906 0.83681 0.85263 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.38 71.98 0.60 -2.86 16 2 C 0.22 5.28 1.32 -11.54 -0.02 5.27 16 3 C -0.16 -2.83 8.75 71.98 0.63 -2.20 16 4 O -0.56 -11.74 12.97 -148.98 -1.93 -13.67 16 5 C -0.07 -2.21 5.83 41.60 0.24 -1.96 16 6 C -0.04 -0.97 11.15 83.49 0.93 -0.04 16 7 N -0.27 -9.56 3.43 -351.47 -1.21 -10.77 16 8 C 0.17 5.35 6.30 85.63 0.54 5.89 16 9 C -0.19 -6.98 5.26 -19.75 -0.10 -7.08 16 10 C -0.03 -0.89 9.46 22.27 0.21 -0.68 16 11 C -0.12 -3.80 6.32 22.35 0.14 -3.66 16 12 Cl -0.07 -1.84 28.95 -2.72 -0.08 -1.92 16 13 C -0.05 -1.51 9.82 22.27 0.22 -1.29 16 14 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 15 C 0.15 6.91 6.60 22.58 0.15 7.06 16 16 O -0.19 -10.16 8.90 -22.87 -0.20 -10.36 16 17 C -0.41 -22.85 9.49 67.92 0.64 -22.21 16 18 H 0.10 5.09 5.20 -2.91 -0.02 5.08 16 19 C -0.01 -0.53 5.49 84.83 0.47 -0.06 16 20 N -0.90 -53.59 13.67 21.61 0.30 -53.30 16 21 Si 1.01 42.13 29.55 68.60 2.03 44.16 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 25 N -0.10 -4.79 12.91 37.02 0.48 -4.31 16 26 N -0.31 -13.34 11.79 -48.60 -0.57 -13.91 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.39 4.43 8.81 -74.06 -0.65 3.78 16 34 H 0.24 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.08 3.14 7.70 -2.39 -0.02 3.12 16 36 H 0.17 2.89 7.98 -2.39 -0.02 2.87 16 37 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.13 5.41 5.64 -2.91 -0.02 5.39 16 40 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.39 363.48 4.11 -74.28 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.44 Total: 23.36 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 4.86 Total: -33.55 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.01 Total: -82.29 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -2.14 Total: -24.03 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -78.39 4.11 -74.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881303350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.851 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds