Wall clock time and date at job start Tue Mar 31 2020 20:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00349 * 2 1 4 4 O 1.20834 * 119.99700 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00329 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47120 * 180.02562 * 5 3 2 7 7 C 1.34779 * 119.99929 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00129 * 179.97438 * 7 6 5 10 10 O 1.45192 * 109.46831 * 179.97438 * 9 7 6 11 11 C 1.34763 * 116.99726 * 179.97438 * 10 9 7 12 12 O 1.21513 * 119.99703 * 0.02562 * 11 10 9 13 13 C 1.47398 * 120.00219 * 180.02562 * 11 10 9 14 14 C 1.39729 * 120.19992 * 359.97438 * 13 11 10 15 15 C 1.37805 * 119.91272 * 179.97438 * 14 13 11 16 16 C 1.38588 * 120.33007 * 0.02562 * 15 14 13 17 17 C 1.38028 * 120.41707 * 359.97438 * 16 15 14 18 18 C 1.38832 * 120.07606 * 359.97438 * 17 16 15 19 19 O 1.35505 * 120.16557 * 179.97438 * 18 17 16 20 20 C 1.34808 * 116.99939 * 354.39821 * 19 18 17 21 21 H 1.08001 * 120.00267 * 5.06438 * 20 19 18 22 22 C 1.38707 * 119.99753 * 185.06265 * 20 19 18 23 23 N 1.31517 * 119.99994 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47170 * 59.99814 * 24 22 20 26 26 H 1.48495 * 109.47199 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47115 * 300.00158 * 24 22 20 28 28 H 1.09007 * 109.46594 * 299.99898 * 1 2 3 29 29 H 1.08991 * 109.47275 * 59.99816 * 1 2 3 30 30 H 1.08999 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47283 * 59.99561 * 5 3 2 32 32 H 1.09007 * 109.46909 * 299.99973 * 5 3 2 33 33 H 0.96994 * 120.00373 * 359.97438 * 6 5 3 34 34 H 1.09000 * 109.46543 * 60.00135 * 9 7 6 35 35 H 1.08994 * 109.46991 * 300.00059 * 9 7 6 36 36 H 1.07997 * 120.04805 * 0.26151 * 14 13 11 37 37 H 1.07992 * 119.83705 * 180.02562 * 15 14 13 38 38 H 1.08000 * 119.79247 * 179.97438 * 16 15 14 39 39 H 1.08000 * 119.96099 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 5.2922 2.9949 -0.0007 8 8 6.1274 2.1156 -0.0016 9 6 5.7195 4.4401 -0.0005 10 8 7.1695 4.5159 -0.0010 11 6 7.7176 5.7470 -0.0014 12 8 7.0034 6.7301 -0.0010 13 6 9.1835 5.9011 -0.0025 14 6 10.0088 4.7735 -0.0025 15 6 11.3786 4.9245 -0.0040 16 6 11.9432 6.1901 -0.0050 17 6 11.1409 7.3132 -0.0050 18 6 9.7589 7.1811 -0.0046 19 8 8.9695 8.2824 -0.0041 20 6 9.5847 9.4762 0.1132 21 1 10.6633 9.5297 0.1190 22 6 8.8322 10.6359 0.2265 23 7 7.5187 10.5708 0.2200 24 14 9.6846 12.2902 0.3883 25 1 10.5335 12.5286 -0.8065 26 1 8.6647 13.3645 0.4926 27 1 10.5333 12.2927 1.6070 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9558 0.7808 -0.8907 32 1 3.9565 0.7805 0.8892 33 1 3.3138 3.3829 0.0005 34 1 5.3304 4.9338 0.8899 35 1 5.3291 4.9345 -0.8900 36 1 9.5738 3.7851 -0.0059 37 1 12.0152 4.0522 -0.0044 38 1 13.0178 6.2983 -0.0057 39 1 11.5887 8.2960 -0.0062 40 1 6.9925 11.3819 0.2989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920633768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:29 Heat of formation + Delta-G solvation = -190.334324 kcal Electronic energy + Delta-G solvation = -27680.979437 eV Core-core repulsion = 23235.001768 eV Total energy + Delta-G solvation = -4445.977668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13298 -40.14510 -39.47040 -38.54351 -37.14718 -36.42684 -35.56424 -34.81942 -32.42821 -30.96378 -30.23110 -28.98474 -28.43788 -26.67877 -25.46685 -23.43247 -21.82189 -21.53402 -20.92007 -20.24415 -18.49162 -18.07984 -17.79075 -17.57897 -17.23982 -16.72525 -16.34533 -16.22250 -16.00505 -15.28439 -15.16406 -14.67131 -14.38315 -14.17126 -14.14139 -13.79853 -13.69210 -13.62745 -13.25843 -13.06705 -12.66088 -12.56193 -12.35540 -12.13891 -11.76979 -11.36663 -11.35622 -11.13970 -11.13577 -10.92265 -10.81399 -10.51940 -10.30513 -10.11263 -9.80797 -9.58806 -9.31275 -8.94175 -8.33199 -7.39192 -6.52998 -4.12597 1.58087 1.58779 1.80880 2.31244 2.36169 2.60804 3.08007 3.10294 3.12560 3.39477 3.50697 3.87608 4.12374 4.52914 4.53730 4.61768 4.68808 4.79199 4.91562 4.99706 5.04305 5.12203 5.21032 5.23607 5.48125 5.60479 5.71627 5.75567 5.89485 6.02123 6.13827 6.55655 6.64422 6.82858 6.92476 7.04660 7.08596 7.13122 7.21670 7.27644 7.65547 7.85526 7.88850 8.61869 8.87225 9.55980 10.60715 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.002258 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.914896 B =12395.529794 C =14187.359066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.459 3.541 4 O -0.501 6.501 5 C 0.131 3.869 6 N -0.727 5.727 7 C 0.526 3.474 8 O -0.512 6.512 9 C 0.053 3.947 10 O -0.343 6.343 11 C 0.500 3.500 12 O -0.476 6.476 13 C -0.216 4.216 14 C -0.013 4.013 15 C -0.234 4.234 16 C -0.042 4.042 17 C -0.240 4.240 18 C 0.192 3.808 19 O -0.125 6.125 20 C -0.403 4.403 21 H 0.096 0.904 22 C 0.045 3.955 23 N -0.833 5.833 24 Si 0.943 3.057 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.268 1.268 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -17.484 -0.252 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.302 3.698 4 O -0.388 6.388 5 C 0.006 3.994 6 N -0.387 5.387 7 C 0.312 3.688 8 O -0.386 6.386 9 C -0.025 4.025 10 O -0.261 6.261 11 C 0.345 3.655 12 O -0.362 6.362 13 C -0.219 4.219 14 C -0.031 4.031 15 C -0.253 4.253 16 C -0.061 4.061 17 C -0.259 4.259 18 C 0.133 3.867 19 O -0.023 6.023 20 C -0.478 4.478 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.464 5.464 24 Si 0.767 3.233 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.193 1.193 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.253 0.747 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.706 -17.294 -0.255 19.363 hybrid contribution -0.307 1.253 0.070 1.292 sum -9.013 -16.041 -0.186 18.401 Atomic orbital electron populations 1.23358 0.75360 1.04132 1.02931 1.86479 1.24111 1.32489 1.83856 1.23569 0.91896 0.81869 0.72495 1.90709 1.66800 1.36246 1.45087 1.20588 0.86787 0.85230 1.06786 1.45586 1.08015 1.07396 1.77694 1.20235 0.81537 0.91092 0.75945 1.90755 1.51025 1.49680 1.47114 1.22367 0.81701 0.93003 1.05398 1.86588 1.19993 1.33342 1.86154 1.21201 0.89669 0.80128 0.74471 1.91013 1.62272 1.38299 1.44591 1.17937 0.88046 0.92004 1.23897 1.21043 0.93194 0.96867 0.92020 1.20561 0.94427 0.96792 1.13506 1.20985 0.98731 0.92352 0.93985 1.21102 0.92632 0.99701 1.12430 1.19212 0.89749 0.87010 0.90759 1.84133 1.33223 1.11762 1.73217 1.21486 0.92610 0.80980 1.52734 0.88663 1.25416 0.95567 0.99354 0.95999 1.70102 1.04490 1.29724 1.42084 0.85757 0.78694 0.79500 0.79363 1.19282 1.20118 1.19267 0.91550 0.91545 0.87660 0.86638 0.86640 0.74731 0.88025 0.88037 0.85407 0.86885 0.86918 0.84792 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.57 10.57 -39.25 -0.41 -2.98 16 3 C 0.46 3.85 8.03 36.00 0.29 4.14 16 4 O -0.50 -5.43 15.42 -18.76 -0.29 -5.72 16 5 C 0.13 1.03 6.27 -5.20 -0.03 1.00 16 6 N -0.73 -7.17 5.53 -61.47 -0.34 -7.51 16 7 C 0.53 6.97 7.91 -10.98 -0.09 6.89 16 8 O -0.51 -8.41 16.50 -14.10 -0.23 -8.65 16 9 C 0.05 0.79 5.95 36.01 0.21 1.00 16 10 O -0.34 -6.52 9.01 -47.34 -0.43 -6.95 16 11 C 0.50 11.30 7.89 34.46 0.27 11.57 16 12 O -0.48 -12.44 14.96 -26.59 -0.40 -12.84 16 13 C -0.22 -4.86 5.89 -104.82 -0.62 -5.47 16 14 C -0.01 -0.24 9.61 -39.18 -0.38 -0.62 16 15 C -0.23 -3.99 10.02 -39.61 -0.40 -4.39 16 16 C -0.04 -0.74 10.03 -39.53 -0.40 -1.14 16 17 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 18 C 0.19 4.73 6.66 -38.58 -0.26 4.48 16 19 O -0.13 -3.61 7.84 -20.99 -0.16 -3.78 16 20 C -0.40 -11.11 9.49 30.91 0.29 -10.81 16 21 H 0.10 2.37 5.21 -52.49 -0.27 2.09 16 22 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 23 N -0.83 -24.44 13.67 55.48 0.76 -23.68 16 24 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.41 3.72 7.44 -40.82 -0.30 3.42 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.13 2.17 7.61 -52.49 -0.40 1.77 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -36.46 364.59 -5.73 -42.19 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.21 Total: 5.85 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.49 Total: 3.57 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.42 Total: -31.19 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.93 Total: -40.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.46 -5.73 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920633768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.146 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds