Wall clock time and date at job start Tue Mar 31 2020 19:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00356 * 3 2 1 5 5 H 1.48499 * 109.47178 * 30.00203 * 3 2 1 6 6 H 1.48503 * 109.47073 * 150.00005 * 3 2 1 7 7 C 1.37872 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00061 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47009 * 300.00368 * 9 7 2 11 11 N 1.46499 * 109.47062 * 180.02562 * 9 7 2 12 12 C 1.34774 * 119.99714 * 155.00267 * 11 9 7 13 13 O 1.21585 * 120.00457 * 359.97438 * 12 11 9 14 14 N 1.34782 * 119.99902 * 179.97438 * 12 11 9 15 15 C 1.47706 * 134.44433 * 180.02562 * 14 12 11 16 16 C 1.53275 * 85.92354 * 155.82393 * 15 14 12 17 17 C 1.47705 * 134.44428 * 359.97438 * 14 12 11 18 18 C 1.52903 * 113.83509 * 268.53740 * 16 15 14 19 19 C 1.53431 * 108.11316 * 171.03207 * 18 16 15 20 20 N 1.45895 * 110.08200 * 46.12811 * 19 18 16 21 21 C 1.33572 * 123.92651 * 338.21716 * 20 19 18 22 22 O 1.21506 * 118.46530 * 184.18247 * 21 20 19 23 23 O 1.34496 * 123.07640 * 4.20913 * 21 20 19 24 24 C 1.52997 * 109.46893 * 60.00286 * 9 7 2 25 25 F 1.39896 * 109.47261 * 180.02562 * 24 9 7 26 26 F 1.39900 * 109.47108 * 300.00002 * 24 9 7 27 27 F 1.39900 * 109.47500 * 60.00090 * 24 9 7 28 28 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00184 * 335.00064 * 11 9 7 30 30 H 1.08998 * 113.79714 * 41.57097 * 15 14 12 31 31 H 1.09000 * 113.79380 * 270.07850 * 15 14 12 32 32 H 1.09000 * 113.79762 * 89.92227 * 17 14 12 33 33 H 1.08995 * 113.79892 * 318.42900 * 17 14 12 34 34 H 1.08997 * 109.71446 * 290.86164 * 18 16 15 35 35 H 1.08997 * 109.71031 * 51.49179 * 18 16 15 36 36 H 1.09001 * 109.53745 * 285.85872 * 19 18 16 37 37 H 1.08993 * 109.27212 * 166.23343 * 19 18 16 38 38 H 0.97001 * 118.03983 * 158.50846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2029 -3.6127 -0.0005 12 6 1.8367 -4.8123 0.4927 13 8 0.7165 -4.9703 0.9381 14 7 2.7124 -5.8369 0.4922 15 6 2.6578 -7.2442 0.9373 16 6 3.7805 -7.4938 -0.0759 17 6 4.1106 -6.0023 0.0456 18 6 3.2820 -7.9041 -1.4620 19 6 4.4800 -7.8992 -2.4205 20 7 5.6167 -8.5758 -1.8052 21 6 5.7613 -8.7422 -0.4878 22 8 6.7847 -9.2527 -0.0775 23 8 4.8270 -8.3717 0.4058 24 6 0.3709 -2.5799 -1.2495 25 9 -0.3291 -3.7912 -1.2493 26 9 -0.5382 -1.5165 -1.2489 27 9 1.1748 -2.5056 -2.3921 28 1 -0.4850 0.8400 0.0004 29 1 3.0967 -3.4866 -0.3555 30 1 1.7229 -7.7475 0.6908 31 1 2.9607 -7.3896 1.9742 32 1 4.8480 -5.7763 0.8159 33 1 4.3276 -5.5208 -0.9078 34 1 2.8480 -8.9029 -1.4159 35 1 2.5324 -7.1927 -1.8085 36 1 4.7553 -6.8708 -2.6546 37 1 4.2068 -8.4160 -3.3404 38 1 6.3110 -8.9221 -2.3874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932889568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:46 Heat of formation + Delta-G solvation = -192.618669 kcal Electronic energy + Delta-G solvation = -30859.109898 eV Core-core repulsion = 25903.469184 eV Total energy + Delta-G solvation = -4955.640714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.40755 -46.06332 -45.66780 -41.78666 -39.89997 -38.24200 -36.29802 -35.95114 -34.69345 -32.66299 -31.31432 -29.23825 -27.33593 -26.68844 -24.80980 -24.59856 -23.14532 -21.38792 -19.97280 -19.37247 -18.54907 -18.08537 -17.62378 -16.95714 -16.91553 -16.70090 -16.51026 -16.00306 -15.90313 -15.41936 -14.99512 -14.82528 -14.65530 -14.07444 -13.98864 -13.53673 -13.29488 -13.22916 -12.97081 -12.59494 -12.57068 -12.46050 -12.35469 -12.27523 -12.02693 -11.95380 -11.87725 -11.71731 -11.21749 -10.93704 -10.90797 -10.87770 -10.56138 -10.45333 -9.74067 -9.70456 -9.65704 -8.83731 -8.75683 -8.28796 -6.29555 -4.54070 2.15054 2.48181 2.60682 3.07894 3.14770 3.21531 3.23935 3.59215 3.64873 3.91683 4.06517 4.16157 4.27329 4.50466 4.56133 4.72684 4.87425 4.98100 5.05680 5.07787 5.20467 5.32635 5.43030 5.45719 5.52420 5.77045 5.80021 5.81664 6.15636 6.39551 6.77914 7.08687 7.29160 7.33056 7.54918 7.58648 7.80324 8.39381 8.46802 8.99586 9.15316 10.61975 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003328 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.022871 B = 8411.538790 C = 8814.616552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.086 0.914 11 N -0.720 5.720 12 C 0.730 3.270 13 O -0.572 6.572 14 N -0.661 5.661 15 C 0.151 3.849 16 C 0.070 3.930 17 C 0.091 3.909 18 C -0.142 4.142 19 C 0.103 3.897 20 N -0.731 5.731 21 C 0.658 3.342 22 O -0.537 6.537 23 O -0.320 6.320 24 C 0.416 3.584 25 F -0.217 7.217 26 F -0.136 7.136 27 F -0.210 7.210 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.518 -12.761 -5.630 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.104 0.896 11 N -0.372 5.372 12 C 0.433 3.567 13 O -0.448 6.448 14 N -0.406 5.406 15 C 0.028 3.972 16 C 0.031 3.969 17 C -0.033 4.033 18 C -0.180 4.180 19 C -0.021 4.021 20 N -0.398 5.398 21 C 0.411 3.589 22 O -0.422 6.422 23 O -0.230 6.230 24 C 0.359 3.641 25 F -0.199 7.199 26 F -0.117 7.117 27 F -0.192 7.192 28 H 0.080 0.920 29 H 0.228 0.772 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.558 -12.737 -4.661 15.065 hybrid contribution 0.873 0.883 -0.922 1.547 sum 7.431 -11.854 -5.583 15.063 Atomic orbital electron populations 1.70395 1.05854 1.27476 1.43447 1.25068 0.95162 1.00102 0.93989 0.86200 0.79552 0.81580 0.78443 1.20197 1.20740 1.19486 1.20851 0.93766 0.87994 1.56370 0.90499 1.19669 0.88186 0.84779 0.91744 0.89614 1.45236 1.17471 1.09171 1.65313 1.15399 0.83045 0.79299 0.78979 1.90955 1.19006 1.81976 1.52852 1.48689 1.12703 1.11352 1.67817 1.22865 0.96530 0.79746 0.98076 1.24041 0.87937 0.88716 0.96197 1.23591 0.85936 0.92275 1.01493 1.22194 0.98618 1.05110 0.92041 1.21605 0.85284 0.98594 0.96589 1.45221 1.26487 1.62020 1.06050 1.17876 0.82475 0.78034 0.80532 1.91050 1.24406 1.48466 1.78299 1.86811 1.36251 1.62655 1.37296 1.23176 0.80936 0.72837 0.87105 1.93070 1.81447 1.48401 1.96964 1.93408 1.68368 1.53780 1.96183 1.92981 1.74470 1.96195 1.55566 0.92031 0.77248 0.88437 0.88480 0.88525 0.89174 0.88796 0.86832 0.90457 0.88902 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.42 9.50 55.43 0.53 -21.89 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.57 29.54 -169.99 -5.02 14.55 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -13.64 8.46 -34.44 -0.29 -13.93 16 8 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.26 6.30 2.21 -69.08 -0.15 6.15 16 10 H 0.09 2.33 7.58 -51.93 -0.39 1.94 16 11 N -0.72 -14.11 4.99 -59.81 -0.30 -14.41 16 12 C 0.73 13.95 8.29 -86.92 -0.72 13.23 16 13 O -0.57 -13.31 15.64 5.29 0.08 -13.23 16 14 N -0.66 -9.13 3.48 -187.43 -0.65 -9.78 16 15 C 0.15 1.66 8.27 -3.24 -0.03 1.63 16 16 C 0.07 0.65 1.28 -90.51 -0.12 0.54 16 17 C 0.09 0.92 7.73 -3.26 -0.03 0.90 16 18 C -0.14 -0.99 5.41 -26.56 -0.14 -1.13 16 19 C 0.10 0.54 7.05 -4.14 -0.03 0.51 16 20 N -0.73 -5.31 5.46 -65.84 -0.36 -5.67 16 21 C 0.66 7.54 8.60 53.52 0.46 8.00 16 22 O -0.54 -8.25 17.94 -19.39 -0.35 -8.59 16 23 O -0.32 -3.63 10.28 -40.04 -0.41 -4.04 16 24 C 0.42 10.27 2.81 37.16 0.10 10.37 16 25 F -0.22 -5.30 15.68 2.25 0.04 -5.27 16 26 F -0.14 -3.67 12.91 2.25 0.03 -3.64 16 27 F -0.21 -4.92 16.94 2.25 0.04 -4.88 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 6.66 8.15 -40.82 -0.33 6.33 16 30 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.77 7.49 -51.93 -0.39 0.38 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.08 0.37 7.62 -51.93 -0.40 -0.02 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.42 2.34 8.82 -40.82 -0.36 1.98 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -33.36 333.41 -6.33 -39.68 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.94 Total: 4.31 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: -1.03 Total: 27.84 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.78 Total: -51.75 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.68 Total: -25.86 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.36 -6.33 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.935 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds