Wall clock time and date at job start Tue Mar 31 2020 19:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47195 * 270.00356 * 3 2 1 5 5 H 1.48499 * 109.47178 * 30.00203 * 3 2 1 6 6 H 1.48503 * 109.47073 * 150.00005 * 3 2 1 7 7 C 1.37872 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00061 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47009 * 300.00368 * 9 7 2 11 11 N 1.46499 * 109.47062 * 180.02562 * 9 7 2 12 12 C 1.34774 * 119.99714 * 155.00267 * 11 9 7 13 13 O 1.21585 * 120.00457 * 359.97438 * 12 11 9 14 14 N 1.34782 * 119.99902 * 179.97438 * 12 11 9 15 15 C 1.47706 * 134.44433 * 180.02562 * 14 12 11 16 16 C 1.53275 * 85.92354 * 155.82393 * 15 14 12 17 17 C 1.47705 * 134.44428 * 359.97438 * 14 12 11 18 18 C 1.52903 * 113.83509 * 268.53740 * 16 15 14 19 19 C 1.53431 * 108.11316 * 171.03207 * 18 16 15 20 20 N 1.45895 * 110.08200 * 46.12811 * 19 18 16 21 21 C 1.33572 * 123.92651 * 338.21716 * 20 19 18 22 22 O 1.21506 * 118.46530 * 184.18247 * 21 20 19 23 23 O 1.34496 * 123.07640 * 4.20913 * 21 20 19 24 24 C 1.52997 * 109.46893 * 60.00286 * 9 7 2 25 25 F 1.39896 * 109.47261 * 180.02562 * 24 9 7 26 26 F 1.39900 * 109.47108 * 300.00002 * 24 9 7 27 27 F 1.39900 * 109.47500 * 60.00090 * 24 9 7 28 28 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00184 * 335.00064 * 11 9 7 30 30 H 1.08998 * 113.79714 * 41.57097 * 15 14 12 31 31 H 1.09000 * 113.79380 * 270.07850 * 15 14 12 32 32 H 1.09000 * 113.79762 * 89.92227 * 17 14 12 33 33 H 1.08995 * 113.79892 * 318.42900 * 17 14 12 34 34 H 1.08997 * 109.71446 * 290.86164 * 18 16 15 35 35 H 1.08997 * 109.71031 * 51.49179 * 18 16 15 36 36 H 1.09001 * 109.53745 * 285.85872 * 19 18 16 37 37 H 1.08993 * 109.27212 * 166.23343 * 19 18 16 38 38 H 0.97001 * 118.03983 * 158.50846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2029 -3.6127 -0.0005 12 6 1.8367 -4.8123 0.4927 13 8 0.7165 -4.9703 0.9381 14 7 2.7124 -5.8369 0.4922 15 6 2.6578 -7.2442 0.9373 16 6 3.7805 -7.4938 -0.0759 17 6 4.1106 -6.0023 0.0456 18 6 3.2820 -7.9041 -1.4620 19 6 4.4800 -7.8992 -2.4205 20 7 5.6167 -8.5758 -1.8052 21 6 5.7613 -8.7422 -0.4878 22 8 6.7847 -9.2527 -0.0775 23 8 4.8270 -8.3717 0.4058 24 6 0.3709 -2.5799 -1.2495 25 9 -0.3291 -3.7912 -1.2493 26 9 -0.5382 -1.5165 -1.2489 27 9 1.1748 -2.5056 -2.3921 28 1 -0.4850 0.8400 0.0004 29 1 3.0967 -3.4866 -0.3555 30 1 1.7229 -7.7475 0.6908 31 1 2.9607 -7.3896 1.9742 32 1 4.8480 -5.7763 0.8159 33 1 4.3276 -5.5208 -0.9078 34 1 2.8480 -8.9029 -1.4159 35 1 2.5324 -7.1927 -1.8085 36 1 4.7553 -6.8708 -2.6546 37 1 4.2068 -8.4160 -3.3404 38 1 6.3110 -8.9221 -2.3874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932889568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:45 Heat of formation + Delta-G solvation = -218.339333 kcal Electronic energy + Delta-G solvation = -30860.225229 eV Core-core repulsion = 25903.469184 eV Total energy + Delta-G solvation = -4956.756046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.38430 -48.01329 -47.69746 -42.65179 -41.05828 -39.50602 -37.33360 -36.62906 -36.44100 -34.47201 -32.22274 -30.65167 -28.61521 -27.59120 -26.56193 -25.46662 -24.24393 -23.07861 -21.31186 -20.31339 -19.58224 -19.15391 -18.85246 -18.71219 -18.59304 -18.37295 -17.80037 -17.23799 -16.98762 -16.84866 -16.54559 -15.86680 -15.60333 -15.28376 -15.00696 -14.87924 -14.80903 -14.59996 -14.44638 -14.39420 -14.26824 -14.20004 -13.99488 -13.85814 -13.32788 -13.13040 -13.01759 -12.74633 -12.65684 -12.61497 -12.53903 -12.21330 -11.80478 -11.56907 -11.41279 -11.27037 -10.68953 -10.29192 -10.25663 -9.71442 -8.20742 -6.51675 1.09456 1.48279 1.48549 1.56102 1.60440 1.76015 2.04332 2.34684 2.38249 2.57308 2.76113 2.90836 2.95467 3.31962 3.51546 3.79388 3.86058 3.88713 4.11087 4.14712 4.25655 4.35392 4.41419 4.49474 4.55591 4.59781 4.76544 4.91210 4.95119 5.12722 5.39675 5.53353 5.65280 5.79069 6.12538 6.53183 6.54684 6.96607 7.03277 7.18748 7.54678 8.71820 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003328 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.022871 B = 8411.538790 C = 8814.616552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.017 3.983 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.270 3.730 10 H 0.046 0.954 11 N -0.714 5.714 12 C 0.728 3.272 13 O -0.621 6.621 14 N -0.659 5.659 15 C 0.143 3.857 16 C 0.083 3.917 17 C 0.090 3.910 18 C -0.140 4.140 19 C 0.102 3.898 20 N -0.712 5.712 21 C 0.657 3.343 22 O -0.585 6.585 23 O -0.333 6.333 24 C 0.415 3.585 25 F -0.217 7.217 26 F -0.151 7.151 27 F -0.201 7.201 28 H 0.269 0.731 29 H 0.409 0.591 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 -12.962 -7.143 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.597 4.597 8 H 0.109 0.891 9 C 0.162 3.838 10 H 0.064 0.936 11 N -0.367 5.367 12 C 0.431 3.569 13 O -0.501 6.501 14 N -0.401 5.401 15 C 0.020 3.980 16 C 0.044 3.956 17 C -0.033 4.033 18 C -0.178 4.178 19 C -0.020 4.020 20 N -0.378 5.378 21 C 0.409 3.591 22 O -0.474 6.474 23 O -0.243 6.243 24 C 0.358 3.642 25 F -0.199 7.199 26 F -0.133 7.133 27 F -0.183 7.183 28 H 0.079 0.921 29 H 0.245 0.755 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.380 -12.983 -6.218 16.657 hybrid contribution 0.311 0.851 -0.450 1.012 sum 8.691 -12.132 -6.668 16.346 Atomic orbital electron populations 1.70528 1.07444 1.28183 1.44592 1.25954 0.95859 1.03547 0.93477 0.85177 0.78549 0.77238 0.78472 1.19818 1.20958 1.18224 1.21185 0.94488 0.88202 1.55853 0.89055 1.19216 0.88353 0.86338 0.89847 0.93627 1.44919 1.17362 1.08630 1.65786 1.15459 0.83117 0.79793 0.78506 1.90916 1.21484 1.82931 1.54768 1.48542 1.13690 1.11042 1.66822 1.23114 0.97738 0.78008 0.99103 1.23904 0.86787 0.88027 0.96875 1.23868 0.83696 0.93021 1.02701 1.22237 0.99313 1.05600 0.90625 1.21850 0.83635 0.99695 0.96855 1.45153 1.27187 1.60859 1.04638 1.17967 0.81855 0.77785 0.81460 1.91019 1.26292 1.50730 1.79323 1.86765 1.36603 1.62815 1.38100 1.23241 0.80853 0.72413 0.87688 1.93064 1.81536 1.48309 1.97005 1.93378 1.68980 1.54594 1.96306 1.92984 1.74099 1.96148 1.55060 0.92138 0.75541 0.87839 0.88036 0.87998 0.86866 0.87699 0.87084 0.89109 0.85632 0.73242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.28 9.50 21.44 0.20 -47.08 16 2 C 0.02 0.86 5.20 84.65 0.44 1.30 16 3 Si 0.98 39.37 29.54 68.60 2.03 41.39 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.56 -27.31 8.46 25.60 0.22 -27.10 16 8 H 0.09 4.08 7.74 -2.91 -0.02 4.06 16 9 C 0.27 13.11 2.21 44.25 0.10 13.20 16 10 H 0.05 2.59 7.58 -2.39 -0.02 2.58 16 11 N -0.71 -27.56 4.99 -461.41 -2.30 -29.87 16 12 C 0.73 27.68 8.29 179.05 1.48 29.16 16 13 O -0.62 -29.54 15.64 -3.98 -0.06 -29.60 16 14 N -0.66 -17.37 3.48 -870.37 -3.03 -20.40 16 15 C 0.14 2.96 8.27 86.24 0.71 3.68 16 16 C 0.08 1.36 1.28 -10.61 -0.01 1.35 16 17 C 0.09 1.60 7.73 86.23 0.67 2.27 16 18 C -0.14 -1.52 5.41 30.71 0.17 -1.35 16 19 C 0.10 0.66 7.05 86.64 0.61 1.27 16 20 N -0.71 -8.22 5.46 -594.00 -3.24 -11.46 16 21 C 0.66 13.93 8.60 129.98 1.12 15.05 16 22 O -0.58 -17.61 17.94 19.93 0.36 -17.25 16 23 O -0.33 -7.00 10.28 -53.96 -0.55 -7.55 16 24 C 0.41 20.59 2.81 71.98 0.20 20.79 16 25 F -0.22 -10.73 15.68 44.97 0.70 -10.02 16 26 F -0.15 -8.29 12.91 44.97 0.58 -7.71 16 27 F -0.20 -9.22 16.94 44.97 0.76 -8.46 16 28 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.41 13.10 8.15 -92.71 -0.76 12.35 16 30 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.54 7.49 -2.39 -0.02 1.52 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16 36 H 0.09 0.45 7.62 -2.39 -0.02 0.43 16 37 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.43 3.52 8.82 -92.71 -0.82 2.71 16 Total: -1.00 -73.99 333.41 0.73 -73.26 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.42 Total: 15.12 kcal Atomic # 6 Polarization: 53.92 SS G_CDS: 5.70 Total: 59.62 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -8.37 Total: -108.80 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.26 Total: -54.41 kcal Atomic # 9 Polarization: -28.24 SS G_CDS: 2.05 Total: -26.19 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.39 kcal Total: -73.99 0.73 -73.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932889568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.081 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds