Wall clock time and date at job start Tue Mar 31 2020 19:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47340 * 274.86939 * 3 2 1 5 5 H 1.48504 * 109.47432 * 34.86765 * 3 2 1 6 6 H 1.48498 * 109.47437 * 154.86876 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99940 * 4.88412 * 7 2 1 9 9 C 1.50702 * 120.00265 * 184.88851 * 7 2 1 10 10 H 1.09003 * 109.46912 * 334.92678 * 9 7 2 11 11 N 1.46503 * 109.47267 * 94.91939 * 9 7 2 12 12 C 1.34770 * 120.00042 * 205.00068 * 11 9 7 13 13 O 1.21589 * 120.00098 * 5.06707 * 12 11 9 14 14 N 1.34780 * 119.99815 * 185.06697 * 12 11 9 15 15 C 1.46821 * 120.12357 * 174.71106 * 14 12 11 16 16 C 1.53719 * 109.05010 * 123.68081 * 15 14 12 17 17 N 1.46951 * 107.37922 * 46.11977 * 16 15 14 18 18 C 1.33397 * 128.36068 * 126.58770 * 17 16 15 19 19 O 1.21510 * 123.19714 * 9.53552 * 18 17 16 20 20 O 1.33988 * 113.60634 * 189.56248 * 18 17 16 21 21 C 1.45836 * 109.47187 * 356.13921 * 20 18 17 22 22 C 1.48232 * 122.80813 * 307.96049 * 17 16 15 23 23 H 1.08998 * 111.74081 * 289.99738 * 22 17 16 24 24 C 1.47097 * 120.12368 * 354.68485 * 14 12 11 25 25 C 1.52995 * 109.47386 * 214.92433 * 9 7 2 26 26 F 1.39904 * 109.47019 * 294.98811 * 25 9 7 27 27 F 1.39903 * 109.47236 * 54.98222 * 25 9 7 28 28 F 1.39895 * 109.47489 * 174.98773 * 25 9 7 29 29 H 0.96998 * 120.00263 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99549 * 25.00518 * 11 9 7 31 31 H 1.09002 * 109.54281 * 3.81141 * 15 14 12 32 32 H 1.08997 * 109.54191 * 243.55356 * 15 14 12 33 33 H 1.09003 * 109.87443 * 286.65249 * 16 15 14 34 34 H 1.09002 * 109.94072 * 165.62573 * 16 15 14 35 35 H 1.08995 * 110.52425 * 116.62742 * 21 20 18 36 36 H 1.09005 * 110.52253 * 239.23230 * 21 20 18 37 37 H 1.08999 * 109.74210 * 357.06662 * 24 14 12 38 38 H 1.08995 * 109.73925 * 117.73318 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3937 2.1058 -1.3950 5 1 1.5019 2.6208 0.8004 6 1 3.5943 1.4126 0.5946 7 6 2.0046 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0787 9 6 3.5075 -1.1964 0.1118 10 1 3.9005 -0.2486 -0.2561 11 7 3.8931 -1.3735 1.5140 12 6 5.0871 -0.9223 1.9466 13 8 5.8048 -0.2876 1.1980 14 7 5.4856 -1.1746 3.2092 15 6 6.8316 -0.7864 3.6485 16 6 6.7138 0.1251 4.8807 17 7 5.7485 -0.4979 5.7969 18 6 5.9072 -0.8001 7.0865 19 8 6.8632 -0.4361 7.7423 20 8 4.9127 -1.5437 7.5897 21 6 3.8831 -1.7300 6.5738 22 6 4.3946 -0.9235 5.3692 23 1 3.7514 -0.0697 5.1563 24 6 4.5733 -1.8395 4.1523 25 6 4.0789 -2.3440 -0.7233 26 9 3.6660 -3.5658 -0.1811 27 9 3.6168 -2.2381 -2.0395 28 9 5.4763 -2.2776 -0.7128 29 1 -0.4850 0.8400 0.0004 30 1 3.2891 -1.8157 2.1309 31 1 7.3368 -0.2500 2.8453 32 1 7.4019 -1.6783 3.9080 33 1 6.3568 1.1102 4.5801 34 1 7.6836 0.2161 5.3699 35 1 3.7879 -2.7845 6.3151 36 1 2.9282 -1.3349 6.9205 37 1 3.6076 -2.0061 3.6750 38 1 4.9985 -2.7930 4.4656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:10 Heat of formation + Delta-G solvation = -227.006428 kcal Electronic energy + Delta-G solvation = -31233.156788 eV Core-core repulsion = 26276.024909 eV Total energy + Delta-G solvation = -4957.131879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.12561 -46.65266 -46.60442 -42.00217 -39.86969 -37.43757 -37.11442 -35.01263 -34.04993 -32.81942 -32.20424 -29.65754 -28.24428 -26.36614 -25.04908 -24.10830 -22.53936 -21.83239 -20.93798 -19.62615 -18.63475 -17.79508 -17.61602 -17.43931 -17.39922 -16.91875 -16.59308 -16.50016 -15.93299 -15.46140 -15.05076 -14.67053 -14.62953 -14.17771 -14.13508 -13.72018 -13.59362 -13.53781 -13.38627 -13.13077 -13.07138 -12.82329 -12.78306 -12.73688 -12.50400 -12.07555 -11.99733 -11.84733 -11.59748 -11.25252 -10.96543 -10.81698 -10.75531 -10.16444 -9.91438 -9.79496 -9.57171 -9.09249 -8.71433 -8.35234 -6.64462 -4.80438 2.11966 2.52144 2.71864 3.03814 3.13710 3.22612 3.24054 3.38450 3.77633 3.85640 4.01000 4.08313 4.16010 4.31423 4.62352 4.76248 4.83284 4.86752 4.92550 5.06315 5.11098 5.12950 5.19882 5.33454 5.40573 5.44803 5.61568 5.70905 6.11113 6.17990 6.41546 6.76724 7.00875 7.09863 7.14231 7.78095 7.81833 8.35864 8.41031 8.90904 8.93205 10.43320 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.004230 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.687355 B = 6617.397421 C = 7221.881452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.101 3.899 3 Si 0.863 3.137 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.215 3.785 10 H 0.095 0.905 11 N -0.726 5.726 12 C 0.696 3.304 13 O -0.583 6.583 14 N -0.636 5.636 15 C 0.114 3.886 16 C 0.133 3.867 17 N -0.625 5.625 18 C 0.648 3.352 19 O -0.527 6.527 20 O -0.329 6.329 21 C 0.047 3.953 22 C 0.074 3.926 23 H 0.115 0.885 24 C 0.107 3.893 25 C 0.436 3.564 26 F -0.194 7.194 27 F -0.181 7.181 28 F -0.196 7.196 29 H 0.276 0.724 30 H 0.394 0.606 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -2.821 9.043 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.109 4.109 3 Si 0.687 3.313 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.111 0.889 9 C 0.111 3.889 10 H 0.112 0.888 11 N -0.383 5.383 12 C 0.398 3.602 13 O -0.460 6.460 14 N -0.375 5.375 15 C -0.011 4.011 16 C 0.012 3.988 17 N -0.374 5.374 18 C 0.402 3.598 19 O -0.412 6.412 20 O -0.239 6.239 21 C -0.029 4.029 22 C -0.031 4.031 23 H 0.133 0.867 24 C -0.018 4.018 25 C 0.380 3.620 26 F -0.175 7.175 27 F -0.163 7.163 28 F -0.178 7.178 29 H 0.086 0.914 30 H 0.232 0.768 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.713 -2.186 9.000 11.438 hybrid contribution -0.087 0.415 0.035 0.425 sum 6.626 -1.771 9.035 11.343 Atomic orbital electron populations 1.69857 1.06451 1.28476 1.44103 1.24997 0.94780 0.99313 0.91826 0.86981 0.81548 0.82858 0.79887 1.19146 1.20514 1.16933 1.20741 0.86332 0.96383 1.53854 0.88857 1.20028 0.97566 0.92313 0.78977 0.88750 1.47005 1.16537 1.62384 1.12412 1.16379 0.82777 0.79870 0.81148 1.90887 1.55579 1.44766 1.54803 1.47263 1.15125 1.64494 1.10572 1.21865 0.83629 0.98971 0.96587 1.22090 0.92275 0.96124 0.88344 1.48307 1.15862 1.63455 1.09739 1.18254 0.82432 0.77743 0.81370 1.91037 1.30108 1.57073 1.63007 1.87361 1.31227 1.66490 1.38854 1.24298 0.91133 1.02618 0.84822 1.23259 0.85178 0.99124 0.95560 0.86747 1.22048 0.95861 0.94715 0.89144 1.21789 0.74927 0.85249 0.80015 1.93063 1.90246 1.48282 1.85929 1.93111 1.88736 1.96181 1.38259 1.93138 1.31590 1.96539 1.96546 0.91379 0.76786 0.86912 0.91182 0.90116 0.87776 0.87179 0.86860 0.87912 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.19 13.96 55.43 0.77 -21.42 16 2 C 0.10 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.86 18.94 27.31 -169.99 -4.64 14.30 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.25 -5.51 6.36 56.52 0.36 -5.15 16 7 C -0.54 -12.73 8.52 -34.44 -0.29 -13.02 16 8 H 0.09 2.41 8.00 -52.49 -0.42 1.99 16 9 C 0.21 4.63 1.70 -69.08 -0.12 4.51 16 10 H 0.09 2.20 4.43 -51.93 -0.23 1.97 16 11 N -0.73 -13.23 4.82 -59.81 -0.29 -13.52 16 12 C 0.70 12.41 7.85 -86.92 -0.68 11.73 16 13 O -0.58 -12.45 14.51 5.29 0.08 -12.38 16 14 N -0.64 -8.42 2.91 -178.02 -0.52 -8.94 16 15 C 0.11 1.30 6.59 -3.49 -0.02 1.28 16 16 C 0.13 1.38 7.10 -3.42 -0.02 1.36 16 17 N -0.63 -6.89 2.99 -169.74 -0.51 -7.40 16 18 C 0.65 8.65 8.88 53.44 0.47 9.12 16 19 O -0.53 -8.94 17.64 -19.09 -0.34 -9.28 16 20 O -0.33 -3.78 11.10 -38.37 -0.43 -4.20 16 21 C 0.05 0.32 7.83 37.53 0.29 0.61 16 22 C 0.07 0.65 4.18 -66.42 -0.28 0.37 16 23 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 24 C 0.11 1.02 5.84 -3.53 -0.02 1.00 16 25 C 0.44 9.22 2.83 37.15 0.11 9.33 16 26 F -0.19 -3.90 16.93 2.25 0.04 -3.87 16 27 F -0.18 -3.95 16.89 2.25 0.04 -3.91 16 28 F -0.20 -4.16 16.04 2.25 0.04 -4.12 16 29 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.39 6.20 6.01 -40.82 -0.25 5.95 16 31 H 0.11 1.42 6.93 -51.93 -0.36 1.06 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 35 H 0.11 0.51 7.55 -51.93 -0.39 0.12 16 36 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.91 5.54 -51.93 -0.29 0.63 16 38 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -32.03 327.51 -5.10 -37.13 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.62 Total: 3.99 kcal Atomic # 6 Polarization: 29.34 SS G_CDS: -0.66 Total: 28.67 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.54 Total: -51.28 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.69 Total: -25.85 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 0.11 Total: -11.90 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.64 Total: 14.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.03 -5.10 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.873 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds