Wall clock time and date at job start Tue Mar 31 2020 19:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47340 * 274.86939 * 3 2 1 5 5 H 1.48504 * 109.47432 * 34.86765 * 3 2 1 6 6 H 1.48498 * 109.47437 * 154.86876 * 3 2 1 7 7 C 1.37881 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99940 * 4.88412 * 7 2 1 9 9 C 1.50702 * 120.00265 * 184.88851 * 7 2 1 10 10 H 1.09003 * 109.46912 * 334.92678 * 9 7 2 11 11 N 1.46503 * 109.47267 * 94.91939 * 9 7 2 12 12 C 1.34770 * 120.00042 * 205.00068 * 11 9 7 13 13 O 1.21589 * 120.00098 * 5.06707 * 12 11 9 14 14 N 1.34780 * 119.99815 * 185.06697 * 12 11 9 15 15 C 1.46821 * 120.12357 * 174.71106 * 14 12 11 16 16 C 1.53719 * 109.05010 * 123.68081 * 15 14 12 17 17 N 1.46951 * 107.37922 * 46.11977 * 16 15 14 18 18 C 1.33397 * 128.36068 * 126.58770 * 17 16 15 19 19 O 1.21510 * 123.19714 * 9.53552 * 18 17 16 20 20 O 1.33988 * 113.60634 * 189.56248 * 18 17 16 21 21 C 1.45836 * 109.47187 * 356.13921 * 20 18 17 22 22 C 1.48232 * 122.80813 * 307.96049 * 17 16 15 23 23 H 1.08998 * 111.74081 * 289.99738 * 22 17 16 24 24 C 1.47097 * 120.12368 * 354.68485 * 14 12 11 25 25 C 1.52995 * 109.47386 * 214.92433 * 9 7 2 26 26 F 1.39904 * 109.47019 * 294.98811 * 25 9 7 27 27 F 1.39903 * 109.47236 * 54.98222 * 25 9 7 28 28 F 1.39895 * 109.47489 * 174.98773 * 25 9 7 29 29 H 0.96998 * 120.00263 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99549 * 25.00518 * 11 9 7 31 31 H 1.09002 * 109.54281 * 3.81141 * 15 14 12 32 32 H 1.08997 * 109.54191 * 243.55356 * 15 14 12 33 33 H 1.09003 * 109.87443 * 286.65249 * 16 15 14 34 34 H 1.09002 * 109.94072 * 165.62573 * 16 15 14 35 35 H 1.08995 * 110.52425 * 116.62742 * 21 20 18 36 36 H 1.09005 * 110.52253 * 239.23230 * 21 20 18 37 37 H 1.08999 * 109.74210 * 357.06662 * 24 14 12 38 38 H 1.08995 * 109.73925 * 117.73318 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3937 2.1058 -1.3950 5 1 1.5019 2.6208 0.8004 6 1 3.5943 1.4126 0.5946 7 6 2.0046 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0787 9 6 3.5075 -1.1964 0.1118 10 1 3.9005 -0.2486 -0.2561 11 7 3.8931 -1.3735 1.5140 12 6 5.0871 -0.9223 1.9466 13 8 5.8048 -0.2876 1.1980 14 7 5.4856 -1.1746 3.2092 15 6 6.8316 -0.7864 3.6485 16 6 6.7138 0.1251 4.8807 17 7 5.7485 -0.4979 5.7969 18 6 5.9072 -0.8001 7.0865 19 8 6.8632 -0.4361 7.7423 20 8 4.9127 -1.5437 7.5897 21 6 3.8831 -1.7300 6.5738 22 6 4.3946 -0.9235 5.3692 23 1 3.7514 -0.0697 5.1563 24 6 4.5733 -1.8395 4.1523 25 6 4.0789 -2.3440 -0.7233 26 9 3.6660 -3.5658 -0.1811 27 9 3.6168 -2.2381 -2.0395 28 9 5.4763 -2.2776 -0.7128 29 1 -0.4850 0.8400 0.0004 30 1 3.2891 -1.8157 2.1309 31 1 7.3368 -0.2500 2.8453 32 1 7.4019 -1.6783 3.9080 33 1 6.3568 1.1102 4.5801 34 1 7.6836 0.2161 5.3699 35 1 3.7879 -2.7845 6.3151 36 1 2.9282 -1.3349 6.9205 37 1 3.6076 -2.0061 3.6750 38 1 4.9985 -2.7930 4.4656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:10 Heat of formation + Delta-G solvation = -249.807086 kcal Electronic energy + Delta-G solvation = -31234.145499 eV Core-core repulsion = 26276.024909 eV Total energy + Delta-G solvation = -4958.120590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.83375 -48.34742 -48.32254 -42.88223 -41.17284 -38.51150 -38.15421 -36.62238 -35.17788 -34.44619 -33.19008 -31.08244 -29.34721 -27.19964 -26.85989 -25.10315 -23.46494 -23.16967 -22.20097 -21.00545 -20.03469 -19.31556 -19.09704 -18.53250 -18.48139 -18.32280 -18.28987 -17.46537 -17.28545 -16.54622 -16.19791 -16.07470 -15.70722 -15.36191 -15.24240 -15.14152 -15.01611 -14.83980 -14.77949 -14.59900 -14.52912 -14.49908 -14.47567 -14.33080 -13.70024 -13.37801 -13.03103 -12.91751 -12.76871 -12.55539 -12.51700 -11.91861 -11.83110 -11.75654 -11.71233 -11.27155 -10.96716 -10.59129 -10.16141 -9.48124 -8.53147 -6.71430 1.16822 1.28536 1.36661 1.47607 1.53518 1.60966 1.91650 2.19020 2.25907 2.48780 2.62056 3.01479 3.20986 3.36671 3.38923 3.41310 3.52292 3.68034 3.90886 4.00010 4.09683 4.23863 4.41714 4.48745 4.49391 4.61274 4.69835 4.71975 4.85739 4.97350 5.25455 5.40215 5.49012 5.77286 5.97742 6.24271 6.47227 6.84639 6.98485 7.02837 7.53868 8.58531 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.004230 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.687355 B = 6617.397421 C = 7221.881452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.224 3.776 10 H 0.080 0.920 11 N -0.723 5.723 12 C 0.695 3.305 13 O -0.621 6.621 14 N -0.629 5.629 15 C 0.116 3.884 16 C 0.138 3.862 17 N -0.622 5.622 18 C 0.648 3.352 19 O -0.573 6.573 20 O -0.341 6.341 21 C 0.048 3.952 22 C 0.076 3.924 23 H 0.120 0.880 24 C 0.102 3.898 25 C 0.437 3.563 26 F -0.187 7.187 27 F -0.187 7.187 28 F -0.195 7.195 29 H 0.280 0.720 30 H 0.408 0.592 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -3.282 10.150 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.119 3.881 10 H 0.098 0.902 11 N -0.381 5.381 12 C 0.397 3.603 13 O -0.501 6.501 14 N -0.367 5.367 15 C -0.007 4.007 16 C 0.016 3.984 17 N -0.370 5.370 18 C 0.403 3.597 19 O -0.461 6.461 20 O -0.251 6.251 21 C -0.026 4.026 22 C -0.029 4.029 23 H 0.138 0.862 24 C -0.021 4.021 25 C 0.381 3.619 26 F -0.168 7.168 27 F -0.168 7.168 28 F -0.177 7.177 29 H 0.090 0.910 30 H 0.248 0.752 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.130 0.870 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.707 -2.679 10.148 12.455 hybrid contribution -0.078 0.457 -0.296 0.550 sum 6.629 -2.222 9.852 12.081 Atomic orbital electron populations 1.69917 1.07551 1.29296 1.46100 1.25461 0.95122 1.01471 0.91725 0.86200 0.80110 0.80349 0.79559 1.19484 1.19729 1.17662 1.20645 0.87258 0.95324 1.53770 0.91283 1.19687 0.96084 0.91932 0.80438 0.90219 1.46396 1.17409 1.62895 1.11362 1.16366 0.82059 0.79473 0.82362 1.90867 1.56443 1.46343 1.56448 1.47240 1.16190 1.63731 1.09501 1.21940 0.82668 0.99736 0.96386 1.22052 0.92786 0.95769 0.87750 1.48362 1.16731 1.62749 1.09123 1.18328 0.82226 0.77583 0.81607 1.90996 1.32098 1.58906 1.64149 1.87340 1.31624 1.65818 1.40280 1.24698 0.90748 1.04270 0.82876 1.23403 0.84105 0.99467 0.95907 0.86189 1.22356 0.95672 0.95472 0.88600 1.21722 0.74965 0.85456 0.79757 1.93073 1.90181 1.47781 1.85780 1.93101 1.88811 1.96230 1.38675 1.93142 1.31436 1.96558 1.96521 0.91031 0.75195 0.88198 0.89566 0.90129 0.87081 0.84344 0.84130 0.87040 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.23 13.96 21.45 0.30 -45.93 16 2 C 0.07 3.37 5.47 84.66 0.46 3.83 16 3 Si 0.91 38.78 27.31 68.60 1.87 40.65 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.25 -10.95 6.36 99.48 0.63 -10.32 16 7 C -0.53 -25.10 8.52 25.60 0.22 -24.89 16 8 H 0.07 3.57 8.00 -2.91 -0.02 3.55 16 9 C 0.22 9.47 1.70 44.24 0.08 9.54 16 10 H 0.08 3.66 4.43 -2.39 -0.01 3.65 16 11 N -0.72 -25.13 4.82 -461.41 -2.22 -27.36 16 12 C 0.70 23.62 7.85 179.06 1.41 25.03 16 13 O -0.62 -25.94 14.51 -4.00 -0.06 -26.00 16 14 N -0.63 -15.17 2.91 -835.40 -2.44 -17.60 16 15 C 0.12 2.44 6.59 86.56 0.57 3.01 16 16 C 0.14 2.63 7.10 86.54 0.61 3.24 16 17 N -0.62 -12.30 2.99 -923.19 -2.76 -15.05 16 18 C 0.65 16.21 8.88 130.01 1.15 17.37 16 19 O -0.57 -19.13 17.64 19.63 0.35 -18.78 16 20 O -0.34 -6.95 11.10 -49.35 -0.55 -7.50 16 21 C 0.05 0.47 7.83 72.23 0.57 1.04 16 22 C 0.08 1.07 4.18 45.02 0.19 1.26 16 23 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 24 C 0.10 1.60 5.84 86.38 0.50 2.10 16 25 C 0.44 18.08 2.83 71.98 0.20 18.28 16 26 F -0.19 -7.27 16.93 44.97 0.76 -6.51 16 27 F -0.19 -8.02 16.89 44.97 0.76 -7.26 16 28 F -0.19 -8.04 16.04 44.97 0.72 -7.32 16 29 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.41 11.92 6.01 -92.70 -0.56 11.36 16 31 H 0.10 2.42 6.93 -2.39 -0.02 2.41 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 2.00 7.87 -2.39 -0.02 1.99 16 35 H 0.14 0.61 7.55 -2.39 -0.02 0.59 16 36 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.11 1.58 5.54 -2.39 -0.01 1.56 16 38 H 0.10 1.24 7.84 -2.39 -0.02 1.22 16 Total: -1.00 -69.21 327.51 3.23 -65.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.52 Total: 12.88 kcal Atomic # 6 Polarization: 53.85 SS G_CDS: 5.96 Total: 59.81 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -7.11 Total: -105.94 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.26 Total: -52.28 kcal Atomic # 9 Polarization: -23.34 SS G_CDS: 2.24 Total: -21.10 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.87 Total: 40.65 kcal Total: -69.21 3.23 -65.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.825 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds