Wall clock time and date at job start Tue Mar 31 2020 19:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47037 * 264.97558 * 3 2 1 5 5 H 1.48500 * 109.47124 * 24.98065 * 3 2 1 6 6 H 1.48505 * 109.46885 * 144.97697 * 3 2 1 7 7 C 1.37879 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00154 * 4.94699 * 7 2 1 9 9 C 1.50696 * 119.99926 * 184.95276 * 7 2 1 10 10 H 1.09002 * 109.47261 * 54.87595 * 9 7 2 11 11 N 1.46501 * 109.47297 * 294.87752 * 9 7 2 12 12 C 1.34775 * 120.00400 * 154.99845 * 11 9 7 13 13 O 1.21591 * 120.00019 * 5.08116 * 12 11 9 14 14 N 1.34778 * 120.00421 * 185.08195 * 12 11 9 15 15 C 1.46816 * 120.12649 * 185.33715 * 14 12 11 16 16 C 1.53718 * 109.05318 * 236.26133 * 15 14 12 17 17 N 1.46943 * 107.38700 * 313.89365 * 16 15 14 18 18 C 1.33405 * 128.36790 * 233.38327 * 17 16 15 19 19 O 1.21508 * 123.19531 * 350.45236 * 18 17 16 20 20 O 1.33988 * 113.60531 * 170.44932 * 18 17 16 21 21 C 1.45833 * 109.47224 * 3.85659 * 20 18 17 22 22 C 1.47892 * 122.82570 * 51.94853 * 17 16 15 23 23 H 1.09002 * 111.64215 * 69.92238 * 22 17 16 24 24 C 1.47097 * 120.12315 * 5.05755 * 14 12 11 25 25 C 1.52998 * 109.47256 * 174.87967 * 9 7 2 26 26 F 1.39901 * 109.47158 * 65.01389 * 25 9 7 27 27 F 1.39903 * 109.47344 * 185.01623 * 25 9 7 28 28 F 1.39900 * 109.46774 * 305.01341 * 25 9 7 29 29 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00011 * 335.00398 * 11 9 7 31 31 H 1.08999 * 109.54509 * 356.13693 * 15 14 12 32 32 H 1.09007 * 109.54212 * 116.39006 * 15 14 12 33 33 H 1.09007 * 109.87258 * 73.36766 * 16 15 14 34 34 H 1.09005 * 109.87500 * 194.34474 * 16 15 14 35 35 H 1.09001 * 110.52077 * 120.63188 * 21 20 18 36 36 H 1.08998 * 110.52478 * 243.37638 * 21 20 18 37 37 H 1.09006 * 109.73912 * 242.26197 * 24 14 12 38 38 H 1.08999 * 109.74196 * 2.97258 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6028 1.9852 -1.3946 5 1 1.3975 2.6810 0.5913 6 1 3.4896 1.4732 0.8035 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0816 9 6 3.5073 -1.1965 0.1121 10 1 3.8058 -0.6430 1.0025 11 7 4.0870 -0.5621 -1.0744 12 6 5.3083 0.0039 -1.0071 13 8 5.9677 -0.0919 0.0100 14 7 5.7988 0.6763 -2.0673 15 6 7.1727 1.1933 -2.0406 16 6 7.1440 2.7080 -2.3007 17 7 6.2498 2.9405 -3.4434 18 6 6.5032 3.6070 -4.5709 19 8 7.5037 4.2759 -4.7377 20 8 5.5496 3.4685 -5.5018 21 6 4.4487 2.6824 -4.9569 22 6 4.8727 2.4050 -3.5056 23 1 4.2149 2.9038 -2.7938 24 6 4.9616 0.8897 -3.2578 25 6 4.0086 -2.6383 0.2159 26 9 3.7259 -3.3171 -0.9743 27 9 5.3904 -2.6370 0.4351 28 9 3.3680 -3.2791 1.2818 29 1 -0.4850 0.8400 0.0004 30 1 3.5919 -0.5495 -1.9084 31 1 7.6163 0.9993 -1.0641 32 1 7.7623 0.7016 -2.8144 33 1 6.7642 3.2279 -1.4211 34 1 8.1476 3.0627 -2.5358 35 1 3.5216 3.2549 -4.9814 36 1 4.3369 1.7483 -5.5075 37 1 5.4148 0.3991 -4.1193 38 1 3.9649 0.4840 -3.0845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:13 Heat of formation + Delta-G solvation = -223.983421 kcal Electronic energy + Delta-G solvation = -31547.450117 eV Core-core repulsion = 26590.449325 eV Total energy + Delta-G solvation = -4957.000792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.13630 -46.64220 -46.62696 -42.01819 -39.94914 -37.44235 -37.14834 -35.13757 -34.07981 -32.78893 -32.18594 -29.66309 -28.24713 -26.37569 -25.11472 -24.12103 -22.56102 -21.83571 -21.00772 -19.59448 -18.63323 -17.81323 -17.67078 -17.47827 -17.41121 -17.01317 -16.53271 -16.51798 -15.93931 -15.45140 -15.04694 -14.71933 -14.63176 -14.25733 -14.14671 -13.74131 -13.56953 -13.53306 -13.38007 -13.16926 -13.08978 -12.90073 -12.82394 -12.74923 -12.52754 -12.10770 -11.98297 -11.82465 -11.62414 -11.28088 -10.95600 -10.78748 -10.75853 -10.36774 -10.00577 -9.84892 -9.58613 -9.16021 -8.75239 -8.40478 -6.64361 -4.78421 2.11760 2.51651 2.68030 2.86348 3.05429 3.14716 3.22178 3.35857 3.74875 3.83444 3.95919 4.07267 4.14645 4.30581 4.62617 4.77353 4.84243 4.86235 4.90900 4.95022 5.09320 5.12646 5.15535 5.30131 5.39078 5.42834 5.58143 5.69042 6.11411 6.19448 6.40429 6.74880 6.93588 7.06513 7.12396 7.76000 7.81480 8.27603 8.40224 8.84833 8.89200 10.43676 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004728 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.133032 B = 5920.456154 C = 6881.710449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.095 3.905 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.536 4.536 8 H 0.097 0.903 9 C 0.220 3.780 10 H 0.091 0.909 11 N -0.731 5.731 12 C 0.695 3.305 13 O -0.577 6.577 14 N -0.636 5.636 15 C 0.114 3.886 16 C 0.133 3.867 17 N -0.625 5.625 18 C 0.648 3.352 19 O -0.526 6.526 20 O -0.329 6.329 21 C 0.047 3.953 22 C 0.071 3.929 23 H 0.113 0.887 24 C 0.106 3.894 25 C 0.441 3.559 26 F -0.191 7.191 27 F -0.191 7.191 28 F -0.184 7.184 29 H 0.275 0.725 30 H 0.395 0.605 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 3.157 -7.575 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.115 4.115 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.574 4.574 8 H 0.114 0.886 9 C 0.117 3.883 10 H 0.109 0.891 11 N -0.390 5.390 12 C 0.397 3.603 13 O -0.454 6.454 14 N -0.375 5.375 15 C -0.011 4.011 16 C 0.011 3.989 17 N -0.373 5.373 18 C 0.402 3.598 19 O -0.412 6.412 20 O -0.239 6.239 21 C -0.028 4.028 22 C -0.034 4.034 23 H 0.131 0.869 24 C -0.019 4.019 25 C 0.386 3.614 26 F -0.173 7.173 27 F -0.172 7.172 28 F -0.166 7.166 29 H 0.086 0.914 30 H 0.233 0.767 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.814 3.590 -7.094 11.148 hybrid contribution -0.068 0.567 -0.374 0.683 sum 7.745 4.156 -7.469 11.534 Atomic orbital electron populations 1.69869 1.06357 1.28362 1.44551 1.24948 0.94778 0.99280 0.92483 0.86772 0.80512 0.82562 0.79038 1.19983 1.21522 1.18274 1.20838 0.85881 0.96571 1.54083 0.88554 1.20220 0.95690 0.84173 0.88265 0.89127 1.47155 1.16679 1.59315 1.15855 1.16373 0.82363 0.78577 0.82974 1.90905 1.59324 1.65545 1.29624 1.47272 1.14376 1.59765 1.16071 1.21884 0.82583 0.91875 1.04713 1.22090 0.94107 0.96509 0.86160 1.48218 1.14884 1.55282 1.18881 1.18253 0.82895 0.79394 0.79218 1.91036 1.26267 1.43051 1.80797 1.87356 1.29916 1.69145 1.37456 1.24301 0.89501 0.97488 0.91513 1.23302 0.84991 0.96881 0.98223 0.86927 1.22176 0.97255 0.93009 0.89482 1.21486 0.74614 0.92313 0.73033 1.93076 1.93428 1.82922 1.47884 1.93162 1.32328 1.97140 1.94586 1.93113 1.81920 1.84114 1.57409 0.91437 0.76659 0.86812 0.91068 0.90144 0.87637 0.86876 0.87077 0.89892 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.09 13.96 55.43 0.77 -21.32 16 2 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 18.32 25.77 -169.99 -4.38 13.94 16 4 H -0.27 -4.91 6.82 56.52 0.39 -4.53 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.69 6.57 56.52 0.37 -5.32 16 7 C -0.54 -12.73 8.65 -34.44 -0.30 -13.03 16 8 H 0.10 2.53 7.95 -52.49 -0.42 2.11 16 9 C 0.22 4.71 1.41 -69.08 -0.10 4.61 16 10 H 0.09 2.09 6.61 -51.93 -0.34 1.75 16 11 N -0.73 -13.47 2.75 -59.81 -0.16 -13.64 16 12 C 0.69 12.47 7.54 -86.92 -0.66 11.82 16 13 O -0.58 -12.18 14.06 5.29 0.07 -12.11 16 14 N -0.64 -8.74 2.91 -177.74 -0.52 -9.26 16 15 C 0.11 1.32 6.58 -3.50 -0.02 1.29 16 16 C 0.13 1.43 7.09 -3.43 -0.02 1.41 16 17 N -0.62 -7.33 2.98 -169.74 -0.51 -7.84 16 18 C 0.65 8.97 8.88 53.45 0.47 9.44 16 19 O -0.53 -9.07 17.64 -19.09 -0.34 -9.41 16 20 O -0.33 -3.96 11.10 -38.37 -0.43 -4.38 16 21 C 0.05 0.37 7.84 37.53 0.29 0.67 16 22 C 0.07 0.72 4.16 -66.37 -0.28 0.45 16 23 H 0.11 1.23 7.85 -51.93 -0.41 0.82 16 24 C 0.11 1.11 5.83 -3.30 -0.02 1.09 16 25 C 0.44 9.24 2.79 37.16 0.10 9.35 16 26 F -0.19 -3.87 16.97 2.25 0.04 -3.83 16 27 F -0.19 -4.02 15.63 2.25 0.04 -3.99 16 28 F -0.18 -3.94 16.86 2.25 0.04 -3.90 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.39 6.47 6.08 -40.82 -0.25 6.22 16 31 H 0.11 1.43 6.93 -51.93 -0.36 1.07 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.11 1.04 7.87 -51.93 -0.41 0.63 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.60 7.55 -51.93 -0.39 0.21 16 37 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 38 H 0.10 1.06 5.61 -51.93 -0.29 0.77 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -31.22 324.44 -4.83 -36.05 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.73 Total: 5.53 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: -0.62 Total: 29.28 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.41 Total: -52.05 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.69 Total: -25.90 kcal Atomic # 9 Polarization: -11.84 SS G_CDS: 0.11 Total: -11.72 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.38 Total: 13.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.22 -4.83 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.938 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds