Wall clock time and date at job start Tue Mar 31 2020 19:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47037 * 264.97558 * 3 2 1 5 5 H 1.48500 * 109.47124 * 24.98065 * 3 2 1 6 6 H 1.48505 * 109.46885 * 144.97697 * 3 2 1 7 7 C 1.37879 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00154 * 4.94699 * 7 2 1 9 9 C 1.50696 * 119.99926 * 184.95276 * 7 2 1 10 10 H 1.09002 * 109.47261 * 54.87595 * 9 7 2 11 11 N 1.46501 * 109.47297 * 294.87752 * 9 7 2 12 12 C 1.34775 * 120.00400 * 154.99845 * 11 9 7 13 13 O 1.21591 * 120.00019 * 5.08116 * 12 11 9 14 14 N 1.34778 * 120.00421 * 185.08195 * 12 11 9 15 15 C 1.46816 * 120.12649 * 185.33715 * 14 12 11 16 16 C 1.53718 * 109.05318 * 236.26133 * 15 14 12 17 17 N 1.46943 * 107.38700 * 313.89365 * 16 15 14 18 18 C 1.33405 * 128.36790 * 233.38327 * 17 16 15 19 19 O 1.21508 * 123.19531 * 350.45236 * 18 17 16 20 20 O 1.33988 * 113.60531 * 170.44932 * 18 17 16 21 21 C 1.45833 * 109.47224 * 3.85659 * 20 18 17 22 22 C 1.47892 * 122.82570 * 51.94853 * 17 16 15 23 23 H 1.09002 * 111.64215 * 69.92238 * 22 17 16 24 24 C 1.47097 * 120.12315 * 5.05755 * 14 12 11 25 25 C 1.52998 * 109.47256 * 174.87967 * 9 7 2 26 26 F 1.39901 * 109.47158 * 65.01389 * 25 9 7 27 27 F 1.39903 * 109.47344 * 185.01623 * 25 9 7 28 28 F 1.39900 * 109.46774 * 305.01341 * 25 9 7 29 29 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00011 * 335.00398 * 11 9 7 31 31 H 1.08999 * 109.54509 * 356.13693 * 15 14 12 32 32 H 1.09007 * 109.54212 * 116.39006 * 15 14 12 33 33 H 1.09007 * 109.87258 * 73.36766 * 16 15 14 34 34 H 1.09005 * 109.87500 * 194.34474 * 16 15 14 35 35 H 1.09001 * 110.52077 * 120.63188 * 21 20 18 36 36 H 1.08998 * 110.52478 * 243.37638 * 21 20 18 37 37 H 1.09006 * 109.73912 * 242.26197 * 24 14 12 38 38 H 1.08999 * 109.74196 * 2.97258 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6028 1.9852 -1.3946 5 1 1.3975 2.6810 0.5913 6 1 3.4896 1.4732 0.8035 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1276 -0.0816 9 6 3.5073 -1.1965 0.1121 10 1 3.8058 -0.6430 1.0025 11 7 4.0870 -0.5621 -1.0744 12 6 5.3083 0.0039 -1.0071 13 8 5.9677 -0.0919 0.0100 14 7 5.7988 0.6763 -2.0673 15 6 7.1727 1.1933 -2.0406 16 6 7.1440 2.7080 -2.3007 17 7 6.2498 2.9405 -3.4434 18 6 6.5032 3.6070 -4.5709 19 8 7.5037 4.2759 -4.7377 20 8 5.5496 3.4685 -5.5018 21 6 4.4487 2.6824 -4.9569 22 6 4.8727 2.4050 -3.5056 23 1 4.2149 2.9038 -2.7938 24 6 4.9616 0.8897 -3.2578 25 6 4.0086 -2.6383 0.2159 26 9 3.7259 -3.3171 -0.9743 27 9 5.3904 -2.6370 0.4351 28 9 3.3680 -3.2791 1.2818 29 1 -0.4850 0.8400 0.0004 30 1 3.5919 -0.5495 -1.9084 31 1 7.6163 0.9993 -1.0641 32 1 7.7623 0.7016 -2.8144 33 1 6.7642 3.2279 -1.4211 34 1 8.1476 3.0627 -2.5358 35 1 3.5216 3.2549 -4.9814 36 1 4.3369 1.7483 -5.5075 37 1 5.4148 0.3991 -4.1193 38 1 3.9649 0.4840 -3.0845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:13 Heat of formation + Delta-G solvation = -245.715684 kcal Electronic energy + Delta-G solvation = -31548.392498 eV Core-core repulsion = 26590.449325 eV Total energy + Delta-G solvation = -4957.943174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.84381 -48.35057 -48.33033 -42.93303 -41.26344 -38.54321 -38.20130 -36.73602 -35.21403 -34.40947 -33.20830 -31.08889 -29.36878 -27.24636 -26.92204 -25.12430 -23.50750 -23.22308 -22.27588 -20.91997 -20.10772 -19.32234 -19.14891 -18.63362 -18.51309 -18.32870 -18.29873 -17.50803 -17.23139 -16.53063 -16.27175 -16.12894 -15.74675 -15.37036 -15.24115 -15.19353 -15.03877 -14.81689 -14.79462 -14.60883 -14.57637 -14.53101 -14.49391 -14.44094 -13.60959 -13.42331 -13.01524 -12.84563 -12.81112 -12.54349 -12.51432 -12.09682 -11.86516 -11.80954 -11.74938 -11.35212 -10.95481 -10.63213 -10.21260 -9.53382 -8.49683 -6.69338 1.13741 1.21258 1.38320 1.47024 1.50910 1.57502 1.88638 2.17099 2.25985 2.44402 2.59217 3.01572 3.16473 3.25211 3.32523 3.40544 3.47451 3.62129 3.86036 3.95834 4.06691 4.17930 4.42123 4.44904 4.47409 4.59536 4.64113 4.69540 4.82935 4.97754 5.22211 5.34511 5.39480 5.73914 5.95001 6.20758 6.46149 6.81889 6.89433 7.01707 7.46333 8.62015 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004728 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.133032 B = 5920.456154 C = 6881.710449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.060 3.940 3 Si 0.934 3.066 4 H -0.225 1.225 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.233 3.767 10 H 0.074 0.926 11 N -0.728 5.728 12 C 0.694 3.306 13 O -0.612 6.612 14 N -0.630 5.630 15 C 0.116 3.884 16 C 0.136 3.864 17 N -0.621 5.621 18 C 0.649 3.351 19 O -0.570 6.570 20 O -0.339 6.339 21 C 0.049 3.951 22 C 0.070 3.930 23 H 0.110 0.890 24 C 0.099 3.901 25 C 0.443 3.557 26 F -0.186 7.186 27 F -0.189 7.189 28 F -0.189 7.189 29 H 0.279 0.721 30 H 0.408 0.592 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 3.907 -9.433 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.759 3.241 4 H -0.148 1.148 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.092 0.908 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.492 6.492 14 N -0.368 5.368 15 C -0.007 4.007 16 C 0.015 3.985 17 N -0.368 5.368 18 C 0.404 3.596 19 O -0.458 6.458 20 O -0.249 6.249 21 C -0.025 4.025 22 C -0.035 4.035 23 H 0.128 0.872 24 C -0.024 4.024 25 C 0.387 3.613 26 F -0.167 7.167 27 F -0.171 7.171 28 F -0.171 7.171 29 H 0.089 0.911 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.129 0.871 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.306 4.335 -9.026 13.009 hybrid contribution -0.226 0.250 0.218 0.401 sum 8.080 4.585 -8.807 12.801 Atomic orbital electron populations 1.69960 1.07876 1.29381 1.46334 1.25530 0.95173 1.02039 0.91842 0.85996 0.78054 0.78688 0.81384 1.14769 1.22441 1.20362 1.20714 0.87009 0.95475 1.54551 0.91823 1.19759 0.94334 0.84444 0.88755 0.90813 1.46573 1.17319 1.59522 1.15342 1.16356 0.81726 0.78749 0.83511 1.90889 1.60078 1.66783 1.31403 1.47280 1.15352 1.58383 1.15777 1.21982 0.81495 0.92407 1.04836 1.22089 0.94699 0.95816 0.85927 1.48266 1.15587 1.54619 1.18334 1.18311 0.82648 0.79026 0.79652 1.90999 1.28212 1.44922 1.81682 1.87338 1.30507 1.69714 1.37310 1.24694 0.88927 0.98940 0.89975 1.23419 0.84029 0.96195 0.99847 0.87179 1.22498 0.97270 0.93696 0.88950 1.21422 0.74577 0.92203 0.73096 1.93082 1.93397 1.82776 1.47469 1.93164 1.32203 1.97131 1.94601 1.93102 1.82047 1.84198 1.57718 0.91101 0.75203 0.87931 0.89148 0.90274 0.86708 0.84376 0.83983 0.87053 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.57 13.96 21.45 0.30 -46.27 16 2 C 0.06 2.87 5.47 84.65 0.46 3.33 16 3 Si 0.93 36.56 25.77 68.60 1.77 38.33 16 4 H -0.22 -6.90 6.82 99.48 0.68 -6.22 16 5 H -0.30 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -11.84 6.57 99.48 0.65 -11.19 16 7 C -0.54 -25.76 8.65 25.60 0.22 -25.54 16 8 H 0.06 3.42 7.95 -2.91 -0.02 3.40 16 9 C 0.23 9.84 1.41 44.24 0.06 9.90 16 10 H 0.07 3.41 6.61 -2.39 -0.02 3.40 16 11 N -0.73 -25.43 2.75 -461.41 -1.27 -26.69 16 12 C 0.69 23.48 7.54 179.05 1.35 24.83 16 13 O -0.61 -25.17 14.06 -4.00 -0.06 -25.23 16 14 N -0.63 -15.39 2.91 -834.50 -2.43 -17.81 16 15 C 0.12 2.39 6.58 86.56 0.57 2.96 16 16 C 0.14 2.61 7.09 86.54 0.61 3.23 16 17 N -0.62 -12.69 2.98 -923.17 -2.75 -15.44 16 18 C 0.65 16.41 8.88 130.00 1.15 17.57 16 19 O -0.57 -18.97 17.64 19.64 0.35 -18.62 16 20 O -0.34 -7.08 11.10 -49.35 -0.55 -7.62 16 21 C 0.05 0.54 7.84 72.22 0.57 1.11 16 22 C 0.07 1.12 4.16 45.24 0.19 1.31 16 23 H 0.11 1.89 7.85 -2.39 -0.02 1.87 16 24 C 0.10 1.66 5.83 86.54 0.50 2.17 16 25 C 0.44 18.38 2.79 71.98 0.20 18.58 16 26 F -0.19 -7.34 16.97 44.97 0.76 -6.58 16 27 F -0.19 -7.86 15.63 44.97 0.70 -7.16 16 28 F -0.19 -8.14 16.86 44.97 0.76 -7.38 16 29 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.41 12.22 6.08 -92.71 -0.56 11.66 16 31 H 0.10 2.42 6.93 -2.39 -0.02 2.40 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.11 2.03 7.87 -2.38 -0.02 2.01 16 35 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 0.73 7.55 -2.39 -0.02 0.71 16 37 H 0.11 1.32 7.85 -2.38 -0.02 1.30 16 38 H 0.11 1.73 5.61 -2.39 -0.01 1.72 16 Total: -1.00 -68.71 324.44 3.99 -64.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.50 Total: 16.30 kcal Atomic # 6 Polarization: 53.57 SS G_CDS: 5.89 Total: 59.46 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -6.15 Total: -106.22 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.26 Total: -51.48 kcal Atomic # 9 Polarization: -23.34 SS G_CDS: 2.22 Total: -21.12 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 1.77 Total: 38.33 kcal Total: -68.71 3.99 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.990 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds