Wall clock time and date at job start Tue Mar 31 2020 19:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48505 * 109.47247 * 270.00482 * 3 2 1 5 5 H 1.48503 * 109.47063 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.47336 * 150.00336 * 3 2 1 7 7 C 1.37881 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99639 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47128 * 300.00589 * 9 7 2 11 11 N 1.46502 * 109.46769 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99871 * 155.00308 * 11 9 7 13 13 O 1.21585 * 120.00349 * 4.90161 * 12 11 9 14 14 N 1.34778 * 119.99776 * 184.89908 * 12 11 9 15 15 C 1.46819 * 120.12362 * 174.77489 * 14 12 11 16 16 C 1.53723 * 109.05117 * 123.68736 * 15 14 12 17 17 N 1.46957 * 107.37552 * 46.11860 * 16 15 14 18 18 C 1.33401 * 128.35557 * 126.58897 * 17 16 15 19 19 O 1.21505 * 123.19888 * 9.53616 * 18 17 16 20 20 O 1.33995 * 113.60230 * 189.56423 * 18 17 16 21 21 C 1.45830 * 109.47307 * 356.13732 * 20 18 17 22 22 C 1.48228 * 122.80795 * 307.96559 * 17 16 15 23 23 H 1.09002 * 111.73791 * 289.99267 * 22 17 16 24 24 C 1.47096 * 120.12487 * 354.76246 * 14 12 11 25 25 C 1.52998 * 109.47159 * 60.00848 * 9 7 2 26 26 F 1.39902 * 109.47191 * 179.97438 * 25 9 7 27 27 F 1.39908 * 109.47022 * 299.99546 * 25 9 7 28 28 F 1.39896 * 109.47335 * 59.99360 * 25 9 7 29 29 H 0.96999 * 120.00625 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99973 * 334.99135 * 11 9 7 31 31 H 1.09000 * 109.54375 * 3.81564 * 15 14 12 32 32 H 1.09004 * 109.54385 * 243.56200 * 15 14 12 33 33 H 1.09000 * 109.87354 * 286.65663 * 16 15 14 34 34 H 1.08991 * 109.87713 * 165.58951 * 16 15 14 35 35 H 1.09000 * 110.52247 * 116.62747 * 21 20 18 36 36 H 1.08994 * 110.52445 * 239.23302 * 21 20 18 37 37 H 1.09002 * 109.73955 * 357.05138 * 24 14 12 38 38 H 1.08991 * 109.74809 * 117.72206 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.6911 -4.9965 0.8553 14 7 2.7409 -5.8077 0.5839 15 6 2.3768 -7.0772 1.2253 16 6 2.6241 -8.2280 0.2365 17 7 3.9484 -8.0139 -0.3636 18 6 4.9751 -8.8632 -0.4279 19 8 4.8884 -10.0362 -0.1234 20 8 6.1114 -8.2994 -0.8598 21 6 5.8569 -6.9106 -1.2247 22 6 4.3479 -6.7320 -0.9914 23 1 3.8157 -6.5572 -1.9265 24 6 4.0959 -5.6264 0.0411 25 6 0.3710 -2.5800 -1.2495 26 9 -0.3281 -3.7918 -1.2498 27 9 -0.5382 -1.5166 -1.2491 28 9 1.1750 -2.5056 -2.3920 29 1 -0.4851 0.8400 0.0004 30 1 3.0968 -3.4866 -0.3557 31 1 1.3232 -7.0560 1.5038 32 1 2.9877 -7.2242 2.1160 33 1 1.8595 -8.2198 -0.5403 34 1 2.6065 -9.1810 0.7651 35 1 6.4251 -6.2367 -0.5836 36 1 6.1046 -6.7392 -2.2723 37 1 4.1721 -4.6518 -0.4410 38 1 4.8276 -5.6973 0.8458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:17 Heat of formation + Delta-G solvation = -203.261367 kcal Electronic energy + Delta-G solvation = -31217.937179 eV Core-core repulsion = 26261.834963 eV Total energy + Delta-G solvation = -4956.102216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.39837 -46.04990 -45.66620 -42.02299 -39.85311 -37.45144 -37.09420 -34.90197 -34.04822 -32.82893 -32.15787 -29.30838 -27.92866 -26.38074 -24.67791 -24.07387 -22.57294 -21.89667 -20.93432 -19.58631 -18.45431 -17.67798 -17.42307 -16.95252 -16.93456 -16.72226 -16.54605 -16.14648 -15.65609 -15.17921 -15.00428 -14.85639 -14.62833 -14.20606 -14.09786 -13.73038 -13.46485 -13.22933 -12.95887 -12.70330 -12.47728 -12.44618 -12.35763 -12.14406 -12.04290 -11.93852 -11.82909 -11.61515 -11.22781 -10.99338 -10.95776 -10.89291 -10.77131 -10.46786 -9.76423 -9.72217 -9.57371 -8.82213 -8.64389 -8.27956 -6.31723 -4.56712 2.10585 2.50483 2.73914 3.12499 3.18910 3.20435 3.21551 3.48074 3.77006 4.06124 4.12252 4.15781 4.33783 4.52864 4.59858 4.80059 4.84452 4.85727 4.90795 5.08392 5.15108 5.35882 5.42986 5.58864 5.70955 5.76265 5.81012 6.11566 6.13106 6.37138 6.68543 7.01762 7.09362 7.17347 7.44766 7.54613 7.80248 8.33518 8.43146 8.94267 9.12444 10.59700 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003566 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.451151 B = 7849.292451 C = 8453.346592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.724 5.724 12 C 0.702 3.298 13 O -0.573 6.573 14 N -0.635 5.635 15 C 0.115 3.885 16 C 0.133 3.867 17 N -0.625 5.625 18 C 0.648 3.352 19 O -0.526 6.526 20 O -0.329 6.329 21 C 0.047 3.953 22 C 0.074 3.926 23 H 0.114 0.886 24 C 0.109 3.891 25 C 0.416 3.584 26 F -0.215 7.215 27 F -0.137 7.137 28 F -0.211 7.211 29 H 0.269 0.731 30 H 0.392 0.608 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -8.536 -1.478 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.102 0.898 11 N -0.379 5.379 12 C 0.404 3.596 13 O -0.449 6.449 14 N -0.374 5.374 15 C -0.009 4.009 16 C 0.011 3.989 17 N -0.373 5.373 18 C 0.402 3.598 19 O -0.411 6.411 20 O -0.239 6.239 21 C -0.029 4.029 22 C -0.031 4.031 23 H 0.132 0.868 24 C -0.017 4.017 25 C 0.359 3.641 26 F -0.197 7.197 27 F -0.118 7.118 28 F -0.193 7.193 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.288 -9.243 -1.038 12.458 hybrid contribution 0.633 1.095 -0.653 1.423 sum 8.920 -8.148 -1.691 12.199 Atomic orbital electron populations 1.70393 1.05870 1.27493 1.43317 1.25071 0.95149 1.00108 0.93991 0.86211 0.79523 0.81633 0.78453 1.20193 1.20766 1.19496 1.20836 0.93704 0.88023 1.56536 0.90528 1.19645 0.88175 0.84864 0.91711 0.89781 1.45474 1.17463 1.09658 1.65306 1.15994 0.84205 0.80509 0.78934 1.90937 1.17173 1.81379 1.55415 1.47137 1.11628 1.15018 1.63639 1.21869 1.03958 0.81070 0.94041 1.22108 0.80250 0.99811 0.96684 1.48310 1.14718 1.13736 1.60567 1.18255 0.79227 0.85314 0.77021 1.91040 1.82962 1.12845 1.54296 1.87362 1.31472 1.26559 1.78550 1.24293 0.94171 0.80403 1.04025 1.23256 0.95288 0.86077 0.98522 0.86827 1.22032 0.85472 0.98191 0.95964 1.23152 0.80952 0.72885 0.87075 1.93083 1.81450 1.48211 1.96951 1.93407 1.68407 1.53833 1.96189 1.92978 1.74486 1.96206 1.55618 0.92019 0.77137 0.86777 0.91148 0.89995 0.87734 0.87205 0.86941 0.88222 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.03 9.50 55.43 0.53 -21.50 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.05 29.54 -169.99 -5.02 14.03 16 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.55 -13.19 8.46 -34.44 -0.29 -13.48 16 8 H 0.08 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.26 6.09 2.20 -69.08 -0.15 5.94 16 10 H 0.08 2.22 7.65 -51.93 -0.40 1.82 16 11 N -0.72 -13.34 4.89 -59.81 -0.29 -13.63 16 12 C 0.70 12.59 7.89 -86.92 -0.69 11.91 16 13 O -0.57 -12.58 14.06 5.29 0.07 -12.51 16 14 N -0.64 -8.20 2.91 -178.02 -0.52 -8.71 16 15 C 0.11 1.28 6.59 -3.49 -0.02 1.26 16 16 C 0.13 1.35 7.10 -3.42 -0.02 1.32 16 17 N -0.63 -6.66 2.99 -169.73 -0.51 -7.16 16 18 C 0.65 8.42 8.88 53.44 0.47 8.89 16 19 O -0.53 -8.78 17.64 -19.09 -0.34 -9.12 16 20 O -0.33 -3.63 11.10 -38.39 -0.43 -4.06 16 21 C 0.05 0.29 7.83 37.54 0.29 0.58 16 22 C 0.07 0.60 4.18 -66.42 -0.28 0.32 16 23 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.11 0.97 5.84 -3.54 -0.02 0.95 16 25 C 0.42 10.13 2.81 37.16 0.10 10.23 16 26 F -0.22 -5.25 15.48 2.25 0.03 -5.22 16 27 F -0.14 -3.66 12.91 2.25 0.03 -3.63 16 28 F -0.21 -4.89 16.94 2.25 0.04 -4.85 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.39 5.98 5.96 -40.82 -0.24 5.74 16 31 H 0.11 1.43 6.93 -51.93 -0.36 1.07 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 35 H 0.11 0.44 7.55 -51.93 -0.39 0.05 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.81 5.54 -51.93 -0.29 0.52 16 38 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -33.13 324.21 -5.94 -39.06 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.73 Total: 2.94 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: -0.69 Total: 29.47 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.79 Total: -51.01 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.69 Total: -25.69 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.13 -5.94 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.199 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds