Wall clock time and date at job start Tue Mar 31 2020 19:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48505 * 109.47247 * 270.00482 * 3 2 1 5 5 H 1.48503 * 109.47063 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.47336 * 150.00336 * 3 2 1 7 7 C 1.37881 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99639 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47128 * 300.00589 * 9 7 2 11 11 N 1.46502 * 109.46769 * 180.02562 * 9 7 2 12 12 C 1.34773 * 119.99871 * 155.00308 * 11 9 7 13 13 O 1.21585 * 120.00349 * 4.90161 * 12 11 9 14 14 N 1.34778 * 119.99776 * 184.89908 * 12 11 9 15 15 C 1.46819 * 120.12362 * 174.77489 * 14 12 11 16 16 C 1.53723 * 109.05117 * 123.68736 * 15 14 12 17 17 N 1.46957 * 107.37552 * 46.11860 * 16 15 14 18 18 C 1.33401 * 128.35557 * 126.58897 * 17 16 15 19 19 O 1.21505 * 123.19888 * 9.53616 * 18 17 16 20 20 O 1.33995 * 113.60230 * 189.56423 * 18 17 16 21 21 C 1.45830 * 109.47307 * 356.13732 * 20 18 17 22 22 C 1.48228 * 122.80795 * 307.96559 * 17 16 15 23 23 H 1.09002 * 111.73791 * 289.99267 * 22 17 16 24 24 C 1.47096 * 120.12487 * 354.76246 * 14 12 11 25 25 C 1.52998 * 109.47159 * 60.00848 * 9 7 2 26 26 F 1.39902 * 109.47191 * 179.97438 * 25 9 7 27 27 F 1.39908 * 109.47022 * 299.99546 * 25 9 7 28 28 F 1.39896 * 109.47335 * 59.99360 * 25 9 7 29 29 H 0.96999 * 120.00625 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99973 * 334.99135 * 11 9 7 31 31 H 1.09000 * 109.54375 * 3.81564 * 15 14 12 32 32 H 1.09004 * 109.54385 * 243.56200 * 15 14 12 33 33 H 1.09000 * 109.87354 * 286.65663 * 16 15 14 34 34 H 1.08991 * 109.87713 * 165.58951 * 16 15 14 35 35 H 1.09000 * 110.52247 * 116.62747 * 21 20 18 36 36 H 1.08994 * 110.52445 * 239.23302 * 21 20 18 37 37 H 1.09002 * 109.73955 * 357.05138 * 24 14 12 38 38 H 1.08991 * 109.74809 * 117.72206 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.6911 -4.9965 0.8553 14 7 2.7409 -5.8077 0.5839 15 6 2.3768 -7.0772 1.2253 16 6 2.6241 -8.2280 0.2365 17 7 3.9484 -8.0139 -0.3636 18 6 4.9751 -8.8632 -0.4279 19 8 4.8884 -10.0362 -0.1234 20 8 6.1114 -8.2994 -0.8598 21 6 5.8569 -6.9106 -1.2247 22 6 4.3479 -6.7320 -0.9914 23 1 3.8157 -6.5572 -1.9265 24 6 4.0959 -5.6264 0.0411 25 6 0.3710 -2.5800 -1.2495 26 9 -0.3281 -3.7918 -1.2498 27 9 -0.5382 -1.5166 -1.2491 28 9 1.1750 -2.5056 -2.3920 29 1 -0.4851 0.8400 0.0004 30 1 3.0968 -3.4866 -0.3557 31 1 1.3232 -7.0560 1.5038 32 1 2.9877 -7.2242 2.1160 33 1 1.8595 -8.2198 -0.5403 34 1 2.6065 -9.1810 0.7651 35 1 6.4251 -6.2367 -0.5836 36 1 6.1046 -6.7392 -2.2723 37 1 4.1721 -4.6518 -0.4410 38 1 4.8276 -5.6973 0.8458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:16 Heat of formation + Delta-G solvation = -226.805009 kcal Electronic energy + Delta-G solvation = -31218.958108 eV Core-core repulsion = 26261.834963 eV Total energy + Delta-G solvation = -4957.123145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.35305 -47.98267 -47.67311 -42.87095 -41.15002 -38.49550 -38.11902 -36.54214 -35.17731 -34.38072 -33.13437 -30.63157 -29.19961 -27.18436 -26.55138 -25.10573 -23.56086 -23.22044 -22.18673 -20.96249 -19.67913 -18.90509 -18.71977 -18.61159 -18.36860 -18.29374 -17.72958 -17.46112 -17.01198 -16.56690 -16.22264 -16.09205 -15.65133 -15.21905 -15.12297 -14.93146 -14.87058 -14.57409 -14.49025 -14.39845 -14.34302 -14.24215 -13.98586 -13.84998 -13.37656 -13.01975 -12.89427 -12.78937 -12.68667 -12.62593 -12.50000 -12.14449 -11.79933 -11.70317 -11.53062 -11.21364 -10.66189 -10.58293 -10.10896 -9.46565 -8.17714 -6.48504 1.20215 1.50679 1.51193 1.54641 1.61192 1.66378 2.07676 2.38713 2.51996 2.58068 2.82642 2.99006 3.25499 3.40297 3.54109 3.83244 3.91425 3.92319 4.01179 4.10804 4.18314 4.26475 4.49990 4.51030 4.60288 4.70479 4.73190 4.86049 4.91424 5.26371 5.39490 5.43637 5.56427 5.68401 5.89547 6.25809 6.56708 6.85742 6.99946 7.22197 7.57823 8.74762 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003566 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.451151 B = 7849.292451 C = 8453.346592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.716 5.716 12 C 0.699 3.301 13 O -0.620 6.620 14 N -0.626 5.626 15 C 0.117 3.883 16 C 0.138 3.862 17 N -0.623 5.623 18 C 0.648 3.352 19 O -0.573 6.573 20 O -0.341 6.341 21 C 0.048 3.952 22 C 0.075 3.925 23 H 0.120 0.880 24 C 0.103 3.897 25 C 0.412 3.588 26 F -0.218 7.218 27 F -0.153 7.153 28 F -0.203 7.203 29 H 0.267 0.733 30 H 0.409 0.591 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 -7.869 -2.021 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.114 0.886 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.373 5.373 12 C 0.401 3.599 13 O -0.500 6.500 14 N -0.364 5.364 15 C -0.007 4.007 16 C 0.017 3.983 17 N -0.370 5.370 18 C 0.403 3.597 19 O -0.462 6.462 20 O -0.251 6.251 21 C -0.026 4.026 22 C -0.029 4.029 23 H 0.138 0.862 24 C -0.020 4.020 25 C 0.355 3.645 26 F -0.200 7.200 27 F -0.134 7.134 28 F -0.185 7.185 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.171 -8.587 -1.603 14.181 hybrid contribution -0.227 0.855 -0.507 1.020 sum 10.944 -7.731 -2.110 13.565 Atomic orbital electron populations 1.70535 1.07559 1.28086 1.44759 1.25971 0.95800 1.03630 0.93562 0.85186 0.78691 0.77242 0.78362 1.20049 1.21343 1.17749 1.21210 0.94640 0.88022 1.55564 0.88557 1.19190 0.88357 0.86588 0.89555 0.93741 1.45142 1.17443 1.08915 1.65779 1.16135 0.84267 0.81031 0.78471 1.90908 1.19598 1.82253 1.57202 1.47127 1.12347 1.14096 1.62827 1.21937 1.03421 0.80507 0.94826 1.22038 0.80202 0.99612 0.96461 1.48361 1.14231 1.14400 1.60005 1.18327 0.79864 0.84949 0.76596 1.90997 1.83871 1.14964 1.56389 1.87342 1.30582 1.28885 1.78256 1.24715 0.92754 0.78445 1.06655 1.23421 0.96957 0.84323 0.98206 0.86202 1.22373 0.83439 0.99191 0.97001 1.23365 0.80921 0.72339 0.87833 1.93074 1.81628 1.48299 1.97008 1.93376 1.69088 1.54664 1.96322 1.92978 1.74111 1.96155 1.55221 0.92284 0.75104 0.88452 0.89393 0.90213 0.87095 0.84229 0.84000 0.86930 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.59 9.50 21.45 0.20 -46.39 16 2 C 0.02 0.77 5.20 84.66 0.44 1.21 16 3 Si 0.98 38.02 29.54 68.60 2.03 40.05 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.56 -25.89 8.46 25.60 0.22 -25.67 16 8 H 0.10 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.27 12.61 2.20 44.24 0.10 12.71 16 10 H 0.04 2.44 7.65 -2.39 -0.02 2.42 16 11 N -0.72 -25.52 4.89 -461.41 -2.26 -27.78 16 12 C 0.70 24.64 7.89 179.05 1.41 26.05 16 13 O -0.62 -27.79 14.06 -3.98 -0.06 -27.84 16 14 N -0.63 -15.04 2.91 -835.40 -2.43 -17.47 16 15 C 0.12 2.48 6.59 86.56 0.57 3.05 16 16 C 0.14 2.66 7.10 86.54 0.61 3.27 16 17 N -0.62 -11.99 2.99 -923.16 -2.76 -14.74 16 18 C 0.65 15.83 8.88 130.00 1.15 16.98 16 19 O -0.57 -18.97 17.64 19.65 0.35 -18.62 16 20 O -0.34 -6.62 11.10 -49.41 -0.55 -7.16 16 21 C 0.05 0.40 7.83 72.23 0.57 0.96 16 22 C 0.08 0.97 4.18 45.02 0.19 1.16 16 23 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 24 C 0.10 1.48 5.84 86.38 0.50 1.99 16 25 C 0.41 20.19 2.81 71.98 0.20 20.39 16 26 F -0.22 -10.81 15.48 44.97 0.70 -10.11 16 27 F -0.15 -8.34 12.91 44.97 0.58 -7.76 16 28 F -0.20 -9.20 16.94 44.97 0.76 -8.44 16 29 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.41 11.38 5.96 -92.71 -0.55 10.83 16 31 H 0.10 2.46 6.93 -2.39 -0.02 2.45 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 2.02 7.87 -2.39 -0.02 2.00 16 35 H 0.14 0.37 7.55 -2.39 -0.02 0.35 16 36 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.11 1.35 5.54 -2.39 -0.01 1.34 16 38 H 0.10 1.12 7.84 -2.39 -0.02 1.10 16 Total: -1.00 -73.82 324.21 3.12 -70.70 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.59 Total: 13.47 kcal Atomic # 6 Polarization: 56.14 SS G_CDS: 5.96 Total: 62.11 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -7.25 Total: -106.38 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.26 Total: -53.63 kcal Atomic # 9 Polarization: -28.35 SS G_CDS: 2.04 Total: -26.31 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -73.82 3.12 -70.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.110 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds