Wall clock time and date at job start Tue Mar 31 2020 19:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38568 * 120.74695 * 2 1 4 4 C 1.38733 * 119.33704 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 119.56253 * 179.97438 * 4 3 2 6 6 N 1.31616 * 120.87329 * 359.74097 * 4 3 2 7 7 C 1.32749 * 121.62145 * 0.52686 * 6 4 3 8 8 C 1.48158 * 119.71595 * 179.75724 * 7 6 4 9 9 O 1.21518 * 120.00053 * 153.56598 * 8 7 6 10 10 N 1.34776 * 119.99883 * 333.56210 * 8 7 6 11 11 C 1.46962 * 120.59662 * 6.29628 * 10 8 7 12 12 C 1.53370 * 108.63682 * 235.25228 * 11 10 8 13 13 N 1.46965 * 108.63275 * 310.57146 * 12 11 10 14 14 C 1.34778 * 120.59094 * 235.20472 * 13 12 11 15 15 O 1.21683 * 120.00670 * 6.96849 * 14 13 12 16 16 C 1.46374 * 119.99613 * 186.96537 * 14 13 12 17 17 H 1.08003 * 120.00246 * 354.77739 * 16 14 13 18 18 C 1.40054 * 119.99918 * 174.77870 * 16 14 13 19 19 N 1.30670 * 120.00056 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99815 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46982 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47203 * 299.99590 * 20 18 16 23 23 H 1.48502 * 109.47565 * 59.99816 * 20 18 16 24 24 C 1.46965 * 118.81202 * 55.48101 * 13 12 11 25 25 C 1.46965 * 120.59587 * 186.32308 * 10 8 7 26 26 C 1.38625 * 120.74681 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47671 * 269.98472 * 1 2 3 28 28 H 1.09005 * 109.46801 * 29.98031 * 1 2 3 29 29 H 1.09002 * 109.47391 * 149.97808 * 1 2 3 30 30 H 1.07997 * 120.33393 * 0.03623 * 3 2 1 31 31 H 1.08999 * 109.61178 * 115.49780 * 11 10 8 32 32 H 1.09000 * 109.60781 * 354.99703 * 11 10 8 33 33 H 1.09001 * 109.60769 * 190.83071 * 12 11 10 34 34 H 1.08993 * 109.61552 * 70.31796 * 12 11 10 35 35 H 0.97000 * 119.99915 * 180.02562 * 19 18 16 36 36 H 1.08997 * 109.60842 * 64.26245 * 24 13 12 37 37 H 1.08999 * 109.61106 * 184.77731 * 24 13 12 38 38 H 1.09007 * 109.60735 * 244.49856 * 25 10 8 39 39 H 1.09003 * 109.60806 * 5.00077 * 25 10 8 40 40 H 1.07995 * 120.45574 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2154 1.1909 0.0000 4 6 3.6023 1.1568 -0.0005 5 17 4.4957 2.6452 -0.0012 6 7 4.2496 0.0108 0.0041 7 6 3.6078 -1.1512 -0.0010 8 6 4.3791 -2.4162 -0.0010 9 8 3.8890 -3.4266 0.4633 10 7 5.6242 -2.4463 -0.5160 11 6 6.2823 -1.2077 -0.9548 12 6 6.7155 -1.3742 -2.4166 13 7 7.4392 -2.6463 -2.5499 14 6 8.6840 -2.6764 -3.0658 15 8 9.2677 -1.6365 -3.3081 16 6 9.3339 -3.9601 -3.3346 17 1 8.8517 -4.8812 -3.0422 18 6 10.5810 -3.9940 -3.9709 19 7 11.1647 -2.8796 -4.3243 20 14 11.4100 -5.6323 -4.3146 21 1 12.7109 -5.3965 -4.9909 22 1 11.6410 -6.3484 -3.0343 23 1 10.5376 -6.4544 -5.1911 24 6 6.7790 -3.8856 -2.1164 25 6 6.3479 -3.7184 -0.6494 26 6 2.2156 -1.1914 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6931 2.1362 0.0006 31 1 7.1574 -1.0184 -0.3331 32 1 5.5850 -0.3740 -0.8725 33 1 7.3695 -0.5497 -2.7005 34 1 5.8357 -1.3846 -3.0600 35 1 12.0283 -2.9030 -4.7653 36 1 5.9036 -4.0707 -2.7388 37 1 7.4749 -4.7201 -2.2020 38 1 7.2278 -3.7079 -0.0060 39 1 5.6939 -4.5429 -0.3655 40 1 1.6954 -2.1378 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934787379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:43 Heat of formation + Delta-G solvation = -36.449745 kcal Electronic energy + Delta-G solvation = -26689.576573 eV Core-core repulsion = 22723.273757 eV Total energy + Delta-G solvation = -3966.302817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18534 -40.68496 -39.60964 -37.78311 -37.59396 -35.54267 -34.76227 -34.41566 -32.68847 -32.11752 -29.32484 -29.00358 -27.85014 -25.88404 -24.62156 -24.02221 -23.16669 -21.70171 -20.37025 -18.95866 -18.21092 -18.12744 -17.65240 -17.37523 -16.94088 -16.61015 -16.47769 -16.24794 -15.89741 -15.78895 -15.50053 -15.12199 -14.60617 -14.31298 -14.15075 -14.02430 -13.64562 -13.57868 -13.37610 -13.18748 -12.92330 -12.82760 -12.71474 -12.68307 -12.47605 -12.30049 -12.27910 -12.06382 -12.03364 -11.60478 -10.92874 -10.75919 -10.39199 -10.25530 -10.04112 -9.79766 -9.02891 -8.30043 -6.85492 -0.59479 -0.15936 0.62177 1.40413 1.41039 1.43930 1.55061 1.69880 2.23494 2.41006 2.45696 2.70409 2.95644 3.39337 3.56688 3.64493 3.77625 3.87300 3.93982 3.99710 4.10204 4.18077 4.33180 4.44106 4.56639 4.59412 4.64239 4.69849 4.81739 4.83005 4.91632 5.01787 5.13034 5.15825 5.31740 5.38342 5.45192 5.69169 6.09210 6.11647 6.26500 6.35411 6.84212 6.86703 7.36322 8.43574 8.65474 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.002976 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.208700 B = 9404.987753 C =10521.947143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.020 4.020 3 C -0.123 4.123 4 C 0.159 3.841 5 Cl -0.021 7.021 6 N -0.476 5.476 7 C 0.086 3.914 8 C 0.570 3.430 9 O -0.558 6.558 10 N -0.586 5.586 11 C 0.074 3.926 12 C 0.108 3.892 13 N -0.647 5.647 14 C 0.542 3.458 15 O -0.629 6.629 16 C -0.569 4.569 17 H 0.096 0.904 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.996 3.004 21 H -0.276 1.276 22 H -0.254 1.254 23 H -0.253 1.253 24 C 0.112 3.888 25 C 0.100 3.900 26 C -0.111 4.111 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.185 0.815 31 H 0.052 0.948 32 H 0.162 0.838 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.274 0.726 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 5.691 9.349 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.007 4.007 5 Cl 0.007 6.993 6 N -0.191 5.191 7 C -0.050 4.050 8 C 0.357 3.643 9 O -0.437 6.437 10 N -0.316 5.316 11 C -0.049 4.049 12 C -0.016 4.016 13 N -0.384 5.384 14 C 0.349 3.651 15 O -0.516 6.516 16 C -0.605 4.605 17 H 0.114 0.886 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.815 3.185 21 H -0.201 1.201 22 H -0.177 1.177 23 H -0.176 1.176 24 C -0.012 4.012 25 C -0.023 4.023 26 C -0.131 4.131 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.202 0.798 31 H 0.071 0.929 32 H 0.178 0.822 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.447 5.921 9.391 25.042 hybrid contribution 0.544 -0.238 -0.327 0.678 sum -21.902 5.683 9.064 24.375 Atomic orbital electron populations 1.21005 0.85693 1.05530 1.04895 1.20751 0.99350 0.90414 0.92247 1.22316 0.91105 1.01770 0.99141 1.22062 0.90424 0.88088 1.00082 1.98441 1.76822 1.27610 1.96405 1.66579 1.40443 0.98090 1.14021 1.20824 0.92671 0.89925 1.01586 1.18149 0.80861 0.87373 0.77887 1.90748 1.70029 1.35119 1.47788 1.48005 1.14465 1.09427 1.59695 1.23287 0.99543 0.88524 0.93592 1.21614 0.95348 0.88536 0.96109 1.48086 1.16269 1.06636 1.67428 1.18683 0.79459 0.90636 0.76346 1.90540 1.65120 1.36953 1.58974 1.21474 1.04972 0.92447 1.41575 0.88595 1.26990 0.97168 1.01812 0.92604 1.70180 1.14459 1.30663 1.29845 0.85101 0.77296 0.76467 0.79663 1.20130 1.17745 1.17643 1.22023 0.97577 0.88468 0.93138 1.22225 0.96717 0.86226 0.97137 1.22243 0.92086 1.01519 0.97298 0.88283 0.88382 0.89486 0.79755 0.92919 0.82242 0.91462 0.92640 0.91589 0.91989 0.87828 0.91380 0.87102 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.06 71.23 0.72 0.24 16 2 C -0.02 -0.24 5.91 -19.70 -0.12 -0.35 16 3 C -0.12 -1.58 9.59 22.47 0.22 -1.36 16 4 C 0.16 3.20 7.27 84.84 0.62 3.82 16 5 Cl -0.02 -0.42 29.10 -2.72 -0.08 -0.50 16 6 N -0.48 -12.27 6.39 -175.86 -1.12 -13.39 16 7 C 0.09 2.22 6.45 41.89 0.27 2.49 16 8 C 0.57 17.92 7.57 86.88 0.66 18.57 16 9 O -0.56 -19.12 16.05 -3.77 -0.06 -19.18 16 10 N -0.59 -19.71 2.95 -820.21 -2.42 -22.13 16 11 C 0.07 2.62 6.30 86.42 0.54 3.16 16 12 C 0.11 4.51 6.60 86.41 0.57 5.08 16 13 N -0.65 -30.42 2.94 -822.26 -2.42 -32.84 16 14 C 0.54 31.84 7.61 86.36 0.66 32.50 16 15 O -0.63 -42.62 14.46 -4.30 -0.06 -42.69 16 16 C -0.57 -31.93 8.86 24.83 0.22 -31.71 16 17 H 0.10 4.74 5.69 -2.91 -0.02 4.73 16 18 C 0.03 1.64 5.50 85.31 0.47 2.11 16 19 N -0.82 -50.52 11.84 21.84 0.26 -50.26 16 20 Si 1.00 40.72 29.56 68.60 2.03 42.75 16 21 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 C 0.11 4.20 6.50 86.56 0.56 4.77 16 25 C 0.10 3.34 6.59 86.56 0.57 3.91 16 26 C -0.11 -2.03 9.33 22.61 0.21 -1.82 16 27 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.10 0.08 8.10 -2.38 -0.02 0.06 16 29 H 0.09 0.30 8.10 -2.39 -0.02 0.28 16 30 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.16 5.15 3.78 -65.80 -0.25 4.90 16 33 H 0.07 3.17 6.99 -2.39 -0.02 3.16 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.10 3.92 5.37 -2.39 -0.01 3.91 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.11 3.34 7.03 -2.39 -0.02 3.33 16 40 H 0.16 2.64 7.86 -2.91 -0.02 2.62 16 Total: -1.00 -80.91 348.73 3.15 -77.76 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.86 Total: 19.06 kcal Atomic # 6 Polarization: 35.24 SS G_CDS: 6.17 Total: 41.41 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.70 Total: -118.62 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -0.12 Total: -61.86 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -80.91 3.15 -77.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934787379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.305 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds