Wall clock time and date at job start Tue Mar 31 2020 19:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48502 * 109.46884 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47132 * 299.99680 * 3 2 1 6 6 H 1.48494 * 109.47278 * 60.00119 * 3 2 1 7 7 C 1.38810 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.47679 * 134.45872 * 180.02562 * 9 7 2 11 11 C 1.53434 * 85.97672 * 204.25682 * 10 9 7 12 12 C 1.47670 * 134.45505 * 359.94880 * 9 7 2 13 13 C 1.52459 * 113.60626 * 222.53247 * 11 10 9 14 14 N 1.47340 * 108.28818 * 180.20749 * 13 11 10 15 15 C 1.34769 * 121.05678 * 228.32782 * 14 13 11 16 16 O 1.21519 * 120.00271 * 184.05809 * 15 14 13 17 17 C 1.48074 * 119.99787 * 4.05226 * 15 14 13 18 18 C 1.39870 * 120.93351 * 308.13360 * 17 15 14 19 19 C 1.38088 * 119.01688 * 179.97438 * 18 17 15 20 20 N 1.31843 * 120.94044 * 359.72056 * 19 18 17 21 21 C 1.31763 * 122.07376 * 0.57729 * 20 19 18 22 22 C 1.38361 * 120.86728 * 359.42182 * 21 20 19 23 23 Cl 1.73603 * 120.51453 * 180.25669 * 22 21 20 24 24 C 1.47137 * 117.88805 * 48.05047 * 14 13 11 25 25 C 1.53225 * 108.72658 * 308.04829 * 24 14 13 26 26 O 1.42489 * 113.80955 * 91.24597 * 11 10 9 27 27 H 0.96999 * 119.99728 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.79339 * 89.98792 * 10 9 7 29 29 H 1.08998 * 113.89641 * 318.53820 * 10 9 7 30 30 H 1.08996 * 113.79307 * 41.48004 * 12 9 7 31 31 H 1.09002 * 113.79276 * 270.00525 * 12 9 7 32 32 H 1.08997 * 109.68638 * 60.46156 * 13 11 10 33 33 H 1.09001 * 109.56903 * 299.88250 * 13 11 10 34 34 H 1.08002 * 120.49135 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.52686 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.56476 * 179.70548 * 21 20 19 37 37 H 1.09000 * 109.59129 * 67.82327 * 24 14 13 38 38 H 1.09003 * 109.59102 * 188.27449 * 24 14 13 39 39 H 1.08996 * 109.49302 * 174.08974 * 25 24 14 40 40 H 1.09001 * 109.48954 * 294.14050 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7211 -3.8108 0.0015 11 6 0.3484 -4.0812 -0.6283 12 6 -0.1045 -2.7566 0.0010 13 6 -0.3606 -5.2994 -0.0471 14 7 -1.6551 -5.4524 -0.7340 15 6 -2.7933 -5.6431 -0.0380 16 8 -3.8387 -5.8405 -0.6251 17 6 -2.7698 -5.6122 1.4422 18 6 -1.8634 -6.3961 2.1635 19 6 -1.8756 -6.3362 3.5430 20 7 -2.7216 -5.5507 4.1799 21 6 -3.5959 -4.8000 3.5411 22 6 -3.6536 -4.7976 2.1586 23 17 -4.8048 -3.7999 1.3262 24 6 -1.6666 -5.3840 -2.2038 25 6 -0.9472 -4.1043 -2.6424 26 8 0.3563 -4.0674 -2.0531 27 1 -0.4850 0.8401 -0.0004 28 1 1.8384 -4.2340 0.9991 29 1 2.5594 -4.0364 -0.6576 30 1 -0.7170 -2.1427 -0.6592 31 1 -0.5299 -2.8665 0.9985 32 1 -0.5252 -5.1539 1.0205 33 1 0.2492 -6.1883 -0.2086 34 1 -1.1642 -7.0387 1.6490 35 1 -1.1790 -6.9377 4.1081 36 1 -4.2734 -4.1750 4.1038 37 1 -1.1509 -6.2523 -2.6141 38 1 -2.6964 -5.3653 -2.5607 39 1 -0.8558 -4.0924 -3.7284 40 1 -1.5190 -3.2356 -2.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053445366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:45 Heat of formation + Delta-G solvation = 36.243620 kcal Electronic energy + Delta-G solvation = -27893.002168 eV Core-core repulsion = 23929.851572 eV Total energy + Delta-G solvation = -3963.150596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09150 -39.92793 -38.69351 -36.71314 -36.16575 -34.76698 -32.96380 -32.25676 -31.33758 -30.05814 -28.11121 -26.19741 -25.30874 -24.91864 -23.90847 -23.00179 -21.92538 -20.01594 -18.93583 -17.92101 -17.22514 -16.82335 -16.71605 -16.33447 -15.91035 -15.31346 -15.21138 -14.95866 -14.39382 -14.34326 -14.22499 -14.16139 -13.75220 -13.46251 -13.33357 -12.75808 -12.45025 -12.37781 -12.13643 -12.06567 -11.45104 -11.27984 -11.24106 -10.93410 -10.86795 -10.72548 -10.51499 -10.27453 -10.00848 -9.94674 -9.67116 -9.58904 -9.35244 -9.17287 -8.88468 -8.38713 -6.94492 -5.79669 -3.12679 0.49809 0.65512 1.87906 2.43575 2.76856 3.37540 3.39592 3.42592 3.45429 3.97180 4.04813 4.13156 4.39615 4.40656 4.53966 4.84747 4.86377 4.97457 5.03997 5.13353 5.19219 5.25478 5.36619 5.38275 5.49477 5.55361 5.59364 5.62084 5.85093 6.03171 6.12399 6.18881 6.30221 6.37892 6.40771 6.87124 7.11726 7.17886 7.44487 7.52171 7.72481 7.91971 7.93595 8.99857 9.66936 10.51146 11.37225 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.004489 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.956520 B = 6235.903257 C = 6921.095574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.137 3.863 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.084 3.916 14 N -0.597 5.597 15 C 0.564 3.436 16 O -0.518 6.518 17 C -0.069 4.069 18 C -0.135 4.135 19 C 0.101 3.899 20 N -0.457 5.457 21 C 0.116 3.884 22 C -0.047 4.047 23 Cl -0.027 7.027 24 C 0.081 3.919 25 C 0.047 3.953 26 O -0.340 6.340 27 H 0.253 0.747 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -15.095 2.767 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.100 0.900 9 N -0.327 5.327 10 C 0.010 3.990 11 C 0.007 3.993 12 C 0.026 3.974 13 C -0.040 4.040 14 N -0.330 5.330 15 C 0.351 3.649 16 O -0.394 6.394 17 C -0.081 4.081 18 C -0.155 4.155 19 C -0.055 4.055 20 N -0.166 5.166 21 C -0.042 4.042 22 C -0.077 4.077 23 Cl 0.002 6.998 24 C -0.041 4.041 25 C -0.031 4.031 26 O -0.257 6.257 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.860 -14.716 3.141 16.148 hybrid contribution 0.156 1.049 -0.726 1.285 sum -5.703 -13.667 2.415 15.005 Atomic orbital electron populations 1.69815 1.05039 1.25276 1.56601 1.24775 0.95665 0.97541 1.02311 0.86045 0.78765 0.83675 0.77264 1.20395 1.21674 1.21753 1.19026 0.90282 0.81649 1.43870 0.90004 1.45744 1.01789 0.99122 1.85997 1.22482 0.93212 0.86885 0.96424 1.23611 0.99184 0.94184 0.82362 1.22663 0.88849 0.89087 0.96778 1.22600 0.83425 0.99754 0.98172 1.48028 1.07062 1.70637 1.07304 1.17970 0.83693 0.77298 0.85974 1.90803 1.30104 1.48498 1.70002 1.20225 0.95896 0.97345 0.94639 1.22405 0.97965 0.99446 0.95722 1.22855 0.95977 0.95358 0.91323 1.67693 1.03527 1.05011 1.40384 1.22841 0.96169 0.96257 0.88943 1.22165 0.94884 0.96606 0.94084 1.98432 1.56839 1.66607 1.77934 1.22370 1.03335 0.99538 0.78865 1.22909 0.85434 0.96084 0.98648 1.87940 1.25990 1.94250 1.17566 0.93679 0.93402 0.92429 0.90416 0.95455 0.88604 0.90409 0.83194 0.81275 0.81104 0.90474 0.88147 0.87827 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 11.39 55.49 0.63 -26.61 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.12 3.70 -180.33 -0.67 -15.79 16 10 C 0.14 2.64 8.33 -3.18 -0.03 2.62 16 11 C 0.05 0.88 1.21 -90.52 -0.11 0.77 16 12 C 0.15 3.51 6.64 -3.16 -0.02 3.49 16 13 C 0.08 1.16 4.68 -3.86 -0.02 1.14 16 14 N -0.60 -8.52 3.03 -173.72 -0.53 -9.05 16 15 C 0.56 8.56 6.79 -12.23 -0.08 8.48 16 16 O -0.52 -9.02 15.64 5.35 0.08 -8.93 16 17 C -0.07 -0.94 4.95 -104.62 -0.52 -1.46 16 18 C -0.13 -1.40 7.58 -39.03 -0.30 -1.70 16 19 C 0.10 0.99 11.17 -17.60 -0.20 0.80 16 20 N -0.46 -5.45 10.33 -13.27 -0.14 -5.59 16 21 C 0.12 1.40 10.99 -17.54 -0.19 1.21 16 22 C -0.05 -0.65 6.37 -38.90 -0.25 -0.90 16 23 Cl -0.03 -0.40 27.49 -51.86 -1.43 -1.82 16 24 C 0.08 1.07 6.59 -3.58 -0.02 1.05 16 25 C 0.05 0.72 6.88 37.27 0.26 0.97 16 26 O -0.34 -6.32 10.52 -35.23 -0.37 -6.69 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 2.06 6.31 -51.93 -0.33 1.73 16 31 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 32 H 0.10 1.27 4.76 -51.93 -0.25 1.03 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.15 1.17 7.28 -52.49 -0.38 0.79 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.32 7.09 -51.93 -0.37 0.95 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.09 7.20 -51.93 -0.37 0.72 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -34.30 344.83 -8.59 -42.88 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.61 Total: -0.60 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -1.73 Total: 9.88 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.70 Total: -57.04 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.29 Total: -15.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.43 Total: -1.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.30 -8.59 -42.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053445366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.128 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds