Wall clock time and date at job start Tue Mar 31 2020 19:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48502 * 109.46884 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47132 * 299.99680 * 3 2 1 6 6 H 1.48494 * 109.47278 * 60.00119 * 3 2 1 7 7 C 1.38810 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99750 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.47679 * 134.45872 * 180.02562 * 9 7 2 11 11 C 1.53434 * 85.97672 * 204.25682 * 10 9 7 12 12 C 1.47670 * 134.45505 * 359.94880 * 9 7 2 13 13 C 1.52459 * 113.60626 * 222.53247 * 11 10 9 14 14 N 1.47340 * 108.28818 * 180.20749 * 13 11 10 15 15 C 1.34769 * 121.05678 * 228.32782 * 14 13 11 16 16 O 1.21519 * 120.00271 * 184.05809 * 15 14 13 17 17 C 1.48074 * 119.99787 * 4.05226 * 15 14 13 18 18 C 1.39870 * 120.93351 * 308.13360 * 17 15 14 19 19 C 1.38088 * 119.01688 * 179.97438 * 18 17 15 20 20 N 1.31843 * 120.94044 * 359.72056 * 19 18 17 21 21 C 1.31763 * 122.07376 * 0.57729 * 20 19 18 22 22 C 1.38361 * 120.86728 * 359.42182 * 21 20 19 23 23 Cl 1.73603 * 120.51453 * 180.25669 * 22 21 20 24 24 C 1.47137 * 117.88805 * 48.05047 * 14 13 11 25 25 C 1.53225 * 108.72658 * 308.04829 * 24 14 13 26 26 O 1.42489 * 113.80955 * 91.24597 * 11 10 9 27 27 H 0.96999 * 119.99728 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.79339 * 89.98792 * 10 9 7 29 29 H 1.08998 * 113.89641 * 318.53820 * 10 9 7 30 30 H 1.08996 * 113.79307 * 41.48004 * 12 9 7 31 31 H 1.09002 * 113.79276 * 270.00525 * 12 9 7 32 32 H 1.08997 * 109.68638 * 60.46156 * 13 11 10 33 33 H 1.09001 * 109.56903 * 299.88250 * 13 11 10 34 34 H 1.08002 * 120.49135 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.52686 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.56476 * 179.70548 * 21 20 19 37 37 H 1.09000 * 109.59129 * 67.82327 * 24 14 13 38 38 H 1.09003 * 109.59102 * 188.27449 * 24 14 13 39 39 H 1.08996 * 109.49302 * 174.08974 * 25 24 14 40 40 H 1.09001 * 109.48954 * 294.14050 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7211 -3.8108 0.0015 11 6 0.3484 -4.0812 -0.6283 12 6 -0.1045 -2.7566 0.0010 13 6 -0.3606 -5.2994 -0.0471 14 7 -1.6551 -5.4524 -0.7340 15 6 -2.7933 -5.6431 -0.0380 16 8 -3.8387 -5.8405 -0.6251 17 6 -2.7698 -5.6122 1.4422 18 6 -1.8634 -6.3961 2.1635 19 6 -1.8756 -6.3362 3.5430 20 7 -2.7216 -5.5507 4.1799 21 6 -3.5959 -4.8000 3.5411 22 6 -3.6536 -4.7976 2.1586 23 17 -4.8048 -3.7999 1.3262 24 6 -1.6666 -5.3840 -2.2038 25 6 -0.9472 -4.1043 -2.6424 26 8 0.3563 -4.0674 -2.0531 27 1 -0.4850 0.8401 -0.0004 28 1 1.8384 -4.2340 0.9991 29 1 2.5594 -4.0364 -0.6576 30 1 -0.7170 -2.1427 -0.6592 31 1 -0.5299 -2.8665 0.9985 32 1 -0.5252 -5.1539 1.0205 33 1 0.2492 -6.1883 -0.2086 34 1 -1.1642 -7.0387 1.6490 35 1 -1.1790 -6.9377 4.1081 36 1 -4.2734 -4.1750 4.1038 37 1 -1.1509 -6.2523 -2.6141 38 1 -2.6964 -5.3653 -2.5607 39 1 -0.8558 -4.0924 -3.7284 40 1 -1.5190 -3.2356 -2.3160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053445366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:45 Heat of formation + Delta-G solvation = 11.855073 kcal Electronic energy + Delta-G solvation = -27894.059735 eV Core-core repulsion = 23929.851572 eV Total energy + Delta-G solvation = -3964.208162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18846 -41.10425 -39.95231 -37.79936 -37.64768 -36.00643 -34.32987 -33.84615 -32.21711 -31.46704 -29.59363 -27.81895 -26.88134 -26.05644 -24.90507 -24.28618 -23.44116 -21.23136 -20.34033 -19.03193 -18.79959 -18.21998 -17.72158 -17.36763 -17.24297 -16.90226 -16.38553 -16.30874 -15.81966 -15.64558 -15.33160 -15.12386 -15.00323 -14.94984 -14.80874 -14.16267 -14.00897 -13.43508 -13.23605 -13.17183 -13.09656 -12.91656 -12.80843 -12.54823 -12.35156 -12.13678 -11.95083 -11.76874 -11.62229 -11.31018 -10.99246 -10.92748 -10.84902 -10.59730 -10.08959 -9.64818 -8.93856 -7.91549 -5.24938 -0.45129 -0.19874 0.87109 1.30454 1.43401 1.44273 1.54498 1.71258 2.44893 2.51517 2.61834 2.99930 3.27524 3.33867 3.35436 3.54577 3.64537 3.65258 3.71100 3.84492 4.04003 4.14474 4.23402 4.37815 4.45087 4.52060 4.55276 4.60236 4.71183 4.73943 4.75334 4.83153 4.92898 5.12394 5.19541 5.25004 5.34731 5.46732 5.89308 6.05082 6.30190 6.67102 6.79416 6.88527 7.59364 8.51234 9.24785 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.004489 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.956520 B = 6235.903257 C = 6921.095574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.226 4.226 8 H 0.088 0.912 9 N -0.635 5.635 10 C 0.138 3.862 11 C 0.070 3.930 12 C 0.151 3.849 13 C 0.093 3.907 14 N -0.599 5.599 15 C 0.563 3.437 16 O -0.548 6.548 17 C -0.091 4.091 18 C -0.124 4.124 19 C 0.110 3.890 20 N -0.471 5.471 21 C 0.112 3.888 22 C -0.070 4.070 23 Cl -0.051 7.051 24 C 0.087 3.913 25 C 0.047 3.953 26 O -0.359 6.359 27 H 0.245 0.755 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.015 0.985 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.185 0.815 35 H 0.212 0.788 36 H 0.185 0.815 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 -17.886 3.433 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.354 4.354 8 H 0.106 0.894 9 N -0.362 5.362 10 C 0.014 3.986 11 C 0.028 3.972 12 C 0.025 3.975 13 C -0.029 4.029 14 N -0.331 5.331 15 C 0.351 3.649 16 O -0.426 6.426 17 C -0.103 4.103 18 C -0.144 4.144 19 C -0.047 4.047 20 N -0.180 5.180 21 C -0.045 4.045 22 C -0.100 4.100 23 Cl -0.022 7.022 24 C -0.035 4.035 25 C -0.030 4.030 26 O -0.277 6.277 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.202 0.798 35 H 0.229 0.771 36 H 0.201 0.799 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.641 -17.543 3.810 18.317 hybrid contribution -0.466 1.857 -0.929 2.128 sum -4.108 -15.686 2.881 16.469 Atomic orbital electron populations 1.70031 1.06541 1.25240 1.58638 1.25606 0.96465 1.00892 1.03247 0.85042 0.78467 0.79552 0.76509 1.18496 1.22298 1.22098 1.19441 0.90894 0.83132 1.41970 0.89422 1.46147 1.03011 1.00822 1.86174 1.22758 0.94045 0.83459 0.98369 1.23255 0.98267 0.93442 0.82230 1.22519 0.87552 0.91774 0.95624 1.22612 0.83156 0.99101 0.98081 1.48117 1.07120 1.70163 1.07732 1.18233 0.83331 0.76637 0.86729 1.90781 1.31068 1.49958 1.70818 1.20334 0.97311 0.98741 0.93895 1.22801 0.97164 0.98472 0.95977 1.23599 0.95311 0.94253 0.91497 1.67785 1.03991 1.05530 1.40740 1.23053 0.96570 0.96514 0.88389 1.22347 0.95399 0.97488 0.94758 1.98415 1.57882 1.67460 1.78461 1.22387 1.03261 0.99269 0.78550 1.23040 0.84018 0.95959 1.00000 1.87901 1.27711 1.94339 1.17755 0.94628 0.89812 0.91554 0.95115 0.96717 0.87821 0.85789 0.79777 0.77102 0.79851 0.87197 0.88394 0.85145 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.98 11.39 21.65 0.25 -58.74 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.63 10.70 84.03 0.90 -11.73 16 8 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 9 N -0.64 -31.93 3.70 -729.33 -2.70 -34.63 16 10 C 0.14 5.00 8.33 86.29 0.72 5.72 16 11 C 0.07 2.41 1.21 -10.63 -0.01 2.40 16 12 C 0.15 7.14 6.64 86.31 0.57 7.71 16 13 C 0.09 2.24 4.68 86.04 0.40 2.64 16 14 N -0.60 -15.84 3.03 -821.81 -2.49 -18.33 16 15 C 0.56 16.50 6.79 86.86 0.59 17.09 16 16 O -0.55 -19.07 15.64 -3.78 -0.06 -19.13 16 17 C -0.09 -2.34 4.95 -19.86 -0.10 -2.44 16 18 C -0.12 -2.12 7.58 22.63 0.17 -1.95 16 19 C 0.11 1.74 11.17 84.66 0.95 2.68 16 20 N -0.47 -10.21 10.33 -195.90 -2.02 -12.24 16 21 C 0.11 2.64 10.99 84.73 0.93 3.57 16 22 C -0.07 -1.93 6.37 22.71 0.14 -1.79 16 23 Cl -0.05 -1.58 27.49 -2.72 -0.07 -1.65 16 24 C 0.09 2.13 6.59 86.33 0.57 2.70 16 25 C 0.05 1.41 6.88 72.06 0.50 1.91 16 26 O -0.36 -12.87 10.52 -148.98 -1.57 -14.44 16 27 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.03 1.72 6.31 -2.39 -0.02 1.71 16 31 H 0.02 0.73 7.92 -2.39 -0.02 0.72 16 32 H 0.10 2.37 4.76 -2.39 -0.01 2.35 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.19 1.81 7.28 -2.91 -0.02 1.79 16 35 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.10 2.49 7.09 -2.39 -0.02 2.48 16 39 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 Total: -1.00 -79.08 344.83 1.24 -77.85 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.08 Total: 7.95 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 6.80 Total: 24.97 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -6.97 Total: -123.93 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.63 Total: -33.57 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -79.08 1.24 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053445366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.704 kcal (2) G-P(sol) polarization free energy of solvation -79.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds