Wall clock time and date at job start Tue Mar 31 2020 19:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48498 * 109.47540 * 240.00418 * 3 2 1 5 5 H 1.48504 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46998 * 120.00137 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21524 * 120.00207 * 359.97438 * 17 16 14 19 19 C 1.48073 * 119.99941 * 180.02562 * 17 16 14 20 20 C 1.39866 * 120.93152 * 359.97438 * 19 17 16 21 21 C 1.38084 * 119.01658 * 179.97438 * 20 19 17 22 22 N 1.31848 * 120.94301 * 359.97438 * 21 20 19 23 23 C 1.31754 * 122.07048 * 0.02562 * 22 21 20 24 24 C 1.38361 * 120.86898 * 359.73333 * 23 22 21 25 25 Cl 1.73597 * 120.51619 * 180.26522 * 24 23 22 26 26 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 27 27 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 28 28 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 29 29 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 30 30 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 31 31 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 32 32 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 33 33 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 34 34 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 35 35 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 36 36 H 1.07997 * 120.49124 * 359.96275 * 20 19 17 37 37 H 1.08005 * 119.52675 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.56112 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.85413 * 121.22671 * 26 14 13 40 40 H 1.09001 * 109.85355 * 242.16764 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2145 -8.8440 2.2656 19 6 -2.0745 -9.2961 2.4232 20 6 -3.3839 -8.8575 2.2013 21 6 -4.4348 -9.6829 2.5492 22 7 -4.2174 -10.8688 3.0827 23 6 -3.0011 -11.3218 3.3092 24 6 -1.8897 -10.5633 2.9869 25 17 -0.2911 -11.1720 3.2830 26 6 0.4823 -5.5547 2.3783 27 8 0.3032 -4.1662 2.0413 28 1 -0.4850 0.8401 0.0004 29 1 2.5555 -4.0369 0.6655 30 1 1.8491 -4.2353 -0.9979 31 1 -0.5357 -2.8569 -0.9963 32 1 -0.7164 -2.1476 0.6687 33 1 -0.0159 -5.6172 -0.8859 34 1 -1.4549 -5.1841 0.0962 35 1 -2.0181 -6.9130 1.3581 36 1 -3.5703 -7.8875 1.7645 37 1 -5.4492 -9.3526 2.3810 38 1 -2.8699 -12.2999 3.7479 39 1 -0.1258 -5.8061 3.2473 40 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053937235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:52 Heat of formation + Delta-G solvation = 30.931290 kcal Electronic energy + Delta-G solvation = -26162.237640 eV Core-core repulsion = 22198.856684 eV Total energy + Delta-G solvation = -3963.380956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14838 -40.18192 -39.06231 -36.93433 -36.22821 -34.67741 -33.23621 -32.10252 -31.59805 -30.38917 -28.24112 -25.91438 -25.43797 -24.91278 -24.03387 -22.34962 -21.50665 -20.90876 -19.04741 -18.76706 -17.35670 -16.76228 -16.69341 -16.33107 -15.92798 -15.53574 -15.34980 -14.94128 -14.83728 -14.63377 -14.36232 -14.21229 -13.74848 -13.51352 -13.10834 -12.74232 -12.66316 -12.34417 -11.96007 -11.74732 -11.69843 -11.53308 -11.23877 -11.15332 -10.81188 -10.75401 -10.57269 -10.40946 -10.18675 -9.81488 -9.72444 -9.60449 -9.49004 -9.33859 -8.92864 -8.79224 -6.89402 -5.75896 -3.07495 0.06859 0.35334 1.64692 2.47133 2.65971 3.21655 3.41449 3.45233 3.46408 3.81933 4.00893 4.06575 4.18454 4.25205 4.45823 4.51046 4.60785 4.93408 4.97573 4.99463 5.10412 5.17862 5.23030 5.29901 5.35457 5.55971 5.68558 5.82726 5.84504 5.91531 5.97846 6.27174 6.29988 6.49920 6.58336 6.87533 7.11509 7.16539 7.21588 7.47032 7.67554 7.80995 7.98385 9.04878 9.71423 10.57282 11.41754 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.002270 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.947023 B =12329.984098 C =12954.267133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.103 3.897 11 C 0.060 3.940 12 C 0.178 3.822 13 C -0.145 4.145 14 C 0.115 3.885 15 H 0.105 0.895 16 N -0.709 5.709 17 C 0.551 3.449 18 O -0.505 6.505 19 C -0.081 4.081 20 C -0.129 4.129 21 C 0.099 3.901 22 N -0.455 5.455 23 C 0.109 3.891 24 C -0.045 4.045 25 Cl -0.014 7.014 26 C 0.038 3.962 27 O -0.334 6.334 28 H 0.254 0.746 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.079 0.921 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -23.115 3.925 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.023 4.023 11 C 0.019 3.981 12 C 0.052 3.948 13 C -0.184 4.184 14 C 0.010 3.990 15 H 0.123 0.877 16 N -0.362 5.362 17 C 0.336 3.664 18 O -0.379 6.379 19 C -0.093 4.093 20 C -0.149 4.149 21 C -0.058 4.058 22 N -0.164 5.164 23 C -0.049 4.049 24 C -0.075 4.075 25 Cl 0.015 6.985 26 C -0.041 4.041 27 O -0.252 6.252 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.204 -23.403 4.459 25.540 hybrid contribution 0.863 1.372 -0.481 1.691 sum -8.341 -22.031 3.979 23.891 Atomic orbital electron populations 1.69790 1.05011 1.25472 1.56706 1.24767 0.95704 0.97512 1.02425 0.86180 0.78472 0.83063 0.77924 1.21203 1.21541 1.21065 1.18951 0.90237 0.81835 1.43837 0.90259 1.45841 1.01944 0.99138 1.86131 1.22923 0.95113 0.87161 0.97140 1.23819 0.97242 0.95645 0.81382 1.22144 0.88837 0.87117 0.96659 1.23214 1.02017 0.94536 0.98649 1.22534 0.88914 0.91972 0.95554 0.87743 1.46017 1.10399 1.16644 1.63157 1.18010 0.88284 0.81560 0.78558 1.90891 1.23055 1.72176 1.51778 1.20329 0.94726 0.94269 0.99964 1.22450 0.91480 1.01734 0.99280 1.22908 1.00056 0.89112 0.93692 1.67707 1.23231 1.14838 1.10645 1.22899 0.85687 0.99894 0.96440 1.22302 0.90026 0.94566 1.00599 1.98445 1.20196 1.86290 1.93539 1.23582 1.00970 0.82630 0.96902 1.88869 1.93112 1.22611 1.20560 0.93584 0.93280 0.93905 0.93995 0.89996 0.89191 0.89840 0.76283 0.83253 0.81190 0.81116 0.90231 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 11.40 55.49 0.63 -26.77 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -6.30 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 N -0.60 -15.67 3.71 -184.63 -0.68 -16.35 16 10 C 0.10 2.10 8.49 -3.47 -0.03 2.07 16 11 C 0.06 1.11 1.28 -90.67 -0.12 1.00 16 12 C 0.18 4.10 7.05 -3.46 -0.02 4.07 16 13 C -0.15 -1.88 6.21 -25.24 -0.16 -2.04 16 14 C 0.11 1.41 3.35 -66.25 -0.22 1.18 16 15 H 0.10 1.32 7.66 -51.93 -0.40 0.93 16 16 N -0.71 -6.99 5.01 -53.04 -0.27 -7.25 16 17 C 0.55 6.18 7.79 -12.22 -0.10 6.09 16 18 O -0.50 -7.20 13.87 5.34 0.07 -7.13 16 19 C -0.08 -0.75 5.91 -104.62 -0.62 -1.36 16 20 C -0.13 -0.82 9.61 -39.03 -0.38 -1.19 16 21 C 0.10 0.61 11.17 -17.60 -0.20 0.41 16 22 N -0.45 -3.69 10.33 -13.27 -0.14 -3.83 16 23 C 0.11 0.85 10.99 -17.54 -0.19 0.66 16 24 C -0.04 -0.42 6.38 -38.91 -0.25 -0.67 16 25 Cl -0.01 -0.15 26.23 -51.86 -1.36 -1.51 16 26 C 0.04 0.56 7.51 37.77 0.28 0.84 16 27 O -0.33 -6.49 11.35 -35.23 -0.40 -6.89 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.80 8.00 -51.93 -0.42 0.38 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 2.15 7.20 -51.93 -0.37 1.77 16 33 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 34 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 35 H 0.40 2.88 6.50 -40.82 -0.27 2.61 16 36 H 0.15 0.53 6.54 -52.49 -0.34 0.19 16 37 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -34.87 350.93 -8.81 -43.68 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.68 Total: -0.87 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.25 Total: 4.29 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.45 Total: -54.20 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.33 Total: -14.02 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.36 Total: -1.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.87 -8.81 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053937235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds