Wall clock time and date at job start Tue Mar 31 2020 19:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48498 * 109.47540 * 240.00418 * 3 2 1 5 5 H 1.48504 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46998 * 120.00137 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21524 * 120.00207 * 359.97438 * 17 16 14 19 19 C 1.48073 * 119.99941 * 180.02562 * 17 16 14 20 20 C 1.39866 * 120.93152 * 359.97438 * 19 17 16 21 21 C 1.38084 * 119.01658 * 179.97438 * 20 19 17 22 22 N 1.31848 * 120.94301 * 359.97438 * 21 20 19 23 23 C 1.31754 * 122.07048 * 0.02562 * 22 21 20 24 24 C 1.38361 * 120.86898 * 359.73333 * 23 22 21 25 25 Cl 1.73597 * 120.51619 * 180.26522 * 24 23 22 26 26 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 27 27 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 28 28 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 29 29 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 30 30 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 31 31 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 32 32 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 33 33 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 34 34 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 35 35 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 36 36 H 1.07997 * 120.49124 * 359.96275 * 20 19 17 37 37 H 1.08005 * 119.52675 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.56112 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.85413 * 121.22671 * 26 14 13 40 40 H 1.09001 * 109.85355 * 242.16764 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2145 -8.8440 2.2656 19 6 -2.0745 -9.2961 2.4232 20 6 -3.3839 -8.8575 2.2013 21 6 -4.4348 -9.6829 2.5492 22 7 -4.2174 -10.8688 3.0827 23 6 -3.0011 -11.3218 3.3092 24 6 -1.8897 -10.5633 2.9869 25 17 -0.2911 -11.1720 3.2830 26 6 0.4823 -5.5547 2.3783 27 8 0.3032 -4.1662 2.0413 28 1 -0.4850 0.8401 0.0004 29 1 2.5555 -4.0369 0.6655 30 1 1.8491 -4.2353 -0.9979 31 1 -0.5357 -2.8569 -0.9963 32 1 -0.7164 -2.1476 0.6687 33 1 -0.0159 -5.6172 -0.8859 34 1 -1.4549 -5.1841 0.0962 35 1 -2.0181 -6.9130 1.3581 36 1 -3.5703 -7.8875 1.7645 37 1 -5.4492 -9.3526 2.3810 38 1 -2.8699 -12.2999 3.7479 39 1 -0.1258 -5.8061 3.2473 40 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053937235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:52 Heat of formation + Delta-G solvation = 5.515081 kcal Electronic energy + Delta-G solvation = -26163.339770 eV Core-core repulsion = 22198.856684 eV Total energy + Delta-G solvation = -3964.483085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94313 -41.31684 -40.03742 -37.81686 -37.57125 -35.76028 -34.13235 -33.93458 -32.16591 -31.53461 -29.83764 -27.56019 -26.69373 -26.07920 -24.61305 -23.91870 -22.63833 -21.86700 -20.53243 -19.51066 -18.73982 -18.10141 -17.36008 -17.26639 -17.00707 -16.64441 -16.57729 -16.36842 -16.10171 -15.64103 -15.27348 -15.13841 -14.99896 -14.82281 -14.49056 -14.37716 -13.35277 -13.31176 -13.21255 -13.04609 -12.96639 -12.85848 -12.74364 -12.68346 -12.36184 -12.25035 -11.85549 -11.62462 -11.33745 -11.33007 -11.03893 -10.93254 -10.58191 -10.49015 -10.14432 -10.03338 -8.92209 -7.90386 -5.22480 -0.57103 -0.17001 0.98652 1.44520 1.48386 1.54208 1.70986 1.83331 2.47272 2.61972 2.82989 3.28172 3.31467 3.34947 3.39393 3.44625 3.54237 3.70223 3.72519 3.88071 4.04940 4.09797 4.17563 4.49143 4.52586 4.60160 4.66081 4.72155 4.75415 4.76535 4.90710 4.94039 4.98289 5.19985 5.25528 5.33055 5.37194 5.51542 5.93056 6.17786 6.35568 6.68788 6.92353 7.01266 7.60428 8.54391 9.26660 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.002270 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.947023 B =12329.984098 C =12954.267133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.641 5.641 10 C 0.101 3.899 11 C 0.078 3.922 12 C 0.174 3.826 13 C -0.129 4.129 14 C 0.130 3.870 15 H 0.105 0.895 16 N -0.696 5.696 17 C 0.552 3.448 18 O -0.540 6.540 19 C -0.097 4.097 20 C -0.116 4.116 21 C 0.103 3.897 22 N -0.471 5.471 23 C 0.108 3.892 24 C -0.060 4.060 25 Cl -0.034 7.034 26 C 0.035 3.965 27 O -0.369 6.369 28 H 0.249 0.751 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.181 0.819 37 H 0.205 0.795 38 H 0.187 0.813 39 H 0.087 0.913 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 -24.244 3.264 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.097 0.903 9 N -0.368 5.368 10 C -0.024 4.024 11 C 0.037 3.963 12 C 0.049 3.951 13 C -0.167 4.167 14 C 0.025 3.975 15 H 0.123 0.877 16 N -0.350 5.350 17 C 0.338 3.662 18 O -0.417 6.417 19 C -0.109 4.109 20 C -0.136 4.136 21 C -0.054 4.054 22 N -0.180 5.180 23 C -0.050 4.050 24 C -0.090 4.090 25 Cl -0.005 7.005 26 C -0.043 4.043 27 O -0.288 6.288 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.256 0.744 36 H 0.199 0.801 37 H 0.222 0.778 38 H 0.204 0.796 39 H 0.105 0.895 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.555 -24.576 3.795 27.015 hybrid contribution 1.227 1.684 -0.229 2.096 sum -9.328 -22.893 3.566 24.976 Atomic orbital electron populations 1.69976 1.06291 1.25698 1.58111 1.25606 0.96664 1.00771 1.02956 0.85155 0.77204 0.78823 0.78159 1.20108 1.21731 1.20685 1.19336 0.90715 0.83523 1.42923 0.90294 1.46264 1.03572 1.00473 1.86462 1.23156 0.96306 0.84352 0.98572 1.23387 0.95859 0.95809 0.81285 1.22076 0.87254 0.89192 0.96588 1.23116 1.02871 0.91292 0.99441 1.22214 0.89760 0.91639 0.93892 0.87672 1.45806 1.10572 1.15958 1.62669 1.18301 0.88403 0.81686 0.77805 1.90879 1.24610 1.72965 1.53222 1.20300 0.95171 0.94132 1.01299 1.22784 0.90011 1.02827 0.98018 1.23526 1.01592 0.88211 0.92045 1.67785 1.23075 1.15940 1.11209 1.23125 0.85269 1.00410 0.96147 1.22440 0.89501 0.95204 1.01896 1.98433 1.21707 1.86579 1.93801 1.23729 1.01094 0.81000 0.98449 1.88834 1.93190 1.25559 1.21170 0.94188 0.93663 0.91091 0.93253 0.94078 0.86962 0.87451 0.74417 0.80133 0.77829 0.79614 0.89467 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 11.40 21.65 0.25 -57.70 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -13.70 10.70 84.03 0.90 -12.80 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.64 -33.56 3.71 -744.76 -2.76 -36.32 16 10 C 0.10 4.04 8.49 86.03 0.73 4.77 16 11 C 0.08 2.78 1.28 -10.64 -0.01 2.77 16 12 C 0.17 8.09 7.05 86.04 0.61 8.69 16 13 C -0.13 -2.92 6.21 31.56 0.20 -2.72 16 14 C 0.13 2.86 3.35 46.08 0.15 3.01 16 15 H 0.11 2.40 7.66 -2.39 -0.02 2.38 16 16 N -0.70 -11.62 5.01 -440.02 -2.20 -13.82 16 17 C 0.55 11.31 7.79 86.85 0.68 11.99 16 18 O -0.54 -14.94 13.87 -3.79 -0.05 -14.99 16 19 C -0.10 -1.59 5.91 -19.87 -0.12 -1.70 16 20 C -0.12 -1.06 9.61 22.63 0.22 -0.84 16 21 C 0.10 0.90 11.17 84.65 0.95 1.85 16 22 N -0.47 -6.47 10.33 -195.90 -2.02 -8.50 16 23 C 0.11 1.53 10.99 84.73 0.93 2.46 16 24 C -0.06 -1.06 6.38 22.71 0.14 -0.92 16 25 Cl -0.03 -0.72 26.23 -2.72 -0.07 -0.79 16 26 C 0.04 1.00 7.51 72.38 0.54 1.54 16 27 O -0.37 -14.21 11.35 -148.98 -1.69 -15.90 16 28 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 29 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 2.22 7.20 -2.39 -0.02 2.21 16 33 H 0.11 2.15 7.95 -2.39 -0.02 2.13 16 34 H 0.11 1.98 7.75 -2.39 -0.02 1.96 16 35 H 0.42 4.26 6.50 -92.71 -0.60 3.66 16 36 H 0.18 0.39 6.54 -2.91 -0.02 0.38 16 37 H 0.21 0.32 8.06 -2.91 -0.02 0.29 16 38 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.09 2.33 7.93 -2.39 -0.02 2.31 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -78.76 350.93 0.34 -78.42 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.49 Total: 6.29 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.38 Total: 14.67 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -6.74 Total: -116.33 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.74 Total: -30.90 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -78.76 0.34 -78.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053937235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.932 kcal (2) G-P(sol) polarization free energy of solvation -78.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds