Wall clock time and date at job start Tue Mar 31 2020 19:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00329 * 2 1 4 4 H 1.48493 * 109.47414 * 270.00405 * 3 2 1 5 5 H 1.48505 * 109.46890 * 30.00325 * 3 2 1 6 6 H 1.48503 * 109.47217 * 149.99931 * 3 2 1 7 7 C 1.38810 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00397 * 337.31330 * 7 2 1 9 9 N 1.36937 * 119.99916 * 157.31370 * 7 2 1 10 10 C 1.47222 * 135.96676 * 350.23806 * 9 7 2 11 11 C 1.52913 * 87.68329 * 153.67146 * 10 9 7 12 12 C 1.47222 * 135.96722 * 170.61092 * 9 7 2 13 13 C 1.53320 * 115.72977 * 270.12404 * 11 10 9 14 14 C 1.55029 * 103.78871 * 229.63979 * 13 11 10 15 15 H 1.08999 * 110.87491 * 139.21635 * 14 13 11 16 16 N 1.46499 * 110.86731 * 262.69736 * 14 13 11 17 17 C 1.34782 * 119.99790 * 205.00062 * 16 14 13 18 18 O 1.21527 * 119.99920 * 359.97438 * 17 16 14 19 19 C 1.48075 * 119.99936 * 179.97438 * 17 16 14 20 20 C 1.39866 * 120.93314 * 359.71201 * 19 17 16 21 21 C 1.38088 * 119.01607 * 179.75370 * 20 19 17 22 22 N 1.31843 * 120.93862 * 0.53762 * 21 20 19 23 23 C 1.31749 * 122.07705 * 359.71212 * 22 21 20 24 24 C 1.38359 * 120.87036 * 0.02563 * 23 22 21 25 25 Cl 1.73595 * 120.52078 * 179.97438 * 24 23 22 26 26 C 1.55059 * 102.13037 * 20.85013 * 14 13 11 27 27 O 1.42844 * 115.81536 * 141.74269 * 11 10 9 28 28 H 0.96993 * 120.00354 * 183.60391 * 1 2 3 29 29 H 1.09001 * 113.49999 * 268.35514 * 10 9 7 30 30 H 1.08996 * 113.50177 * 38.89601 * 10 9 7 31 31 H 1.08998 * 113.50031 * 321.10260 * 12 9 7 32 32 H 1.09003 * 113.50151 * 91.58488 * 12 9 7 33 33 H 1.09006 * 110.56191 * 348.21230 * 13 11 10 34 34 H 1.08994 * 110.56500 * 110.91703 * 13 11 10 35 35 H 0.96997 * 120.00735 * 24.99209 * 16 14 13 36 36 H 1.08003 * 120.49065 * 0.02562 * 20 19 17 37 37 H 1.08005 * 119.52240 * 180.27598 * 21 20 19 38 38 H 1.07995 * 119.56888 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.58766 * 82.03086 * 26 14 13 40 40 H 1.09000 * 110.58912 * 204.78593 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5329 -2.1014 0.3598 9 7 3.3001 -1.2479 -0.4580 10 6 4.2054 -0.3276 -1.1656 11 6 5.3714 -1.0763 -0.5190 12 6 4.3867 -2.2413 -0.4632 13 6 5.8370 -0.5379 0.8389 14 6 7.3732 -0.4064 0.6773 15 1 7.7352 0.5122 1.1391 16 7 8.0586 -1.5742 1.2366 17 6 9.3338 -1.4685 1.6598 18 8 9.9153 -0.4045 1.5771 19 6 10.0264 -2.6487 2.2256 20 6 9.3740 -3.8809 2.3355 21 6 10.0592 -4.9568 2.8644 22 7 11.3066 -4.8317 3.2725 23 6 11.9577 -3.6891 3.1924 24 6 11.3501 -2.5609 2.6708 25 17 12.2163 -1.0598 2.5702 26 6 7.5356 -0.3564 -0.8639 27 8 6.5214 -1.2684 -1.3443 28 1 -0.4850 -0.8383 0.0528 29 1 4.1701 -0.4314 -2.2501 30 1 4.1163 0.7079 -0.8372 31 1 4.4504 -2.8205 0.4579 32 1 4.4000 -2.8662 -1.3563 33 1 5.3885 0.4353 1.0391 34 1 5.5923 -1.2419 1.6342 35 1 7.5947 -2.4235 1.3024 36 1 8.3508 -3.9905 2.0074 37 1 9.5647 -5.9133 2.9489 38 1 12.9789 -3.6322 3.5393 39 1 7.3519 0.6515 -1.2362 40 1 8.5293 -0.6963 -1.1559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053937236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:56 Heat of formation + Delta-G solvation = 36.207105 kcal Electronic energy + Delta-G solvation = -26618.675392 eV Core-core repulsion = 22655.523213 eV Total energy + Delta-G solvation = -3963.152179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17334 -40.40808 -39.15332 -36.96628 -36.71206 -34.69976 -33.23531 -32.42461 -31.58774 -30.50634 -28.50775 -25.87406 -25.62398 -25.33575 -24.03238 -22.13213 -21.54741 -20.88388 -19.18143 -18.81610 -17.58771 -17.38906 -16.69673 -16.46398 -16.08170 -15.77815 -15.49486 -15.16081 -14.88782 -14.75465 -14.61414 -14.31207 -13.91471 -13.55533 -13.30729 -12.93459 -12.69422 -12.42784 -12.31659 -11.74333 -11.65435 -11.58542 -11.48052 -11.28153 -11.01361 -10.74127 -10.68592 -10.58776 -10.39709 -9.92055 -9.76009 -9.50049 -9.43294 -9.28047 -8.86427 -8.68786 -7.27839 -6.44709 -3.30525 0.07901 0.37055 1.64647 2.46801 2.65508 3.22524 3.34143 3.38496 3.56786 3.83534 3.95029 4.03501 4.09669 4.26642 4.43479 4.51328 4.61119 4.71166 4.78939 4.83065 4.96144 4.97840 5.13552 5.24824 5.27704 5.39189 5.57271 5.66514 5.82977 5.85033 6.01789 6.07807 6.20149 6.21958 6.24234 6.26495 6.46313 7.01762 7.10900 7.22903 7.23742 7.80098 8.16464 8.87137 9.42292 10.28822 11.06588 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002808 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.127145 B = 9970.709716 C =10576.078119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.017 4.017 3 Si 1.063 2.937 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.314 4.314 8 H 0.080 0.920 9 N -0.615 5.615 10 C 0.093 3.907 11 C 0.055 3.945 12 C 0.133 3.867 13 C -0.124 4.124 14 C 0.109 3.891 15 H 0.111 0.889 16 N -0.704 5.704 17 C 0.553 3.447 18 O -0.508 6.508 19 C -0.081 4.081 20 C -0.128 4.128 21 C 0.099 3.901 22 N -0.455 5.455 23 C 0.109 3.891 24 C -0.045 4.045 25 Cl -0.015 7.015 26 C 0.038 3.962 27 O -0.358 6.358 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.403 0.597 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.105 -6.854 5.614 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.895 3.105 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.439 4.439 8 H 0.098 0.902 9 N -0.345 5.345 10 C -0.033 4.033 11 C 0.014 3.986 12 C 0.006 3.994 13 C -0.162 4.162 14 C 0.004 3.996 15 H 0.129 0.871 16 N -0.356 5.356 17 C 0.338 3.662 18 O -0.383 6.383 19 C -0.093 4.093 20 C -0.148 4.148 21 C -0.057 4.057 22 N -0.164 5.164 23 C -0.050 4.050 24 C -0.075 4.075 25 Cl 0.014 6.986 26 C -0.040 4.040 27 O -0.275 6.275 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.555 -5.149 5.764 25.743 hybrid contribution -0.562 -1.190 -0.291 1.348 sum 23.993 -6.339 5.473 25.413 Atomic orbital electron populations 1.70923 1.05659 1.29768 1.49567 1.25738 0.96201 1.00890 0.98910 0.83797 0.74145 0.75959 0.76576 1.21967 1.22204 1.21266 1.19913 0.85061 0.96711 1.42249 0.90209 1.45571 1.10935 1.13093 1.64895 1.23090 0.87837 0.95566 0.96783 1.23710 0.85307 0.99790 0.89807 1.22414 0.85293 0.92286 0.99366 1.22806 0.91799 1.04332 0.97244 1.22680 0.92578 0.89530 0.94770 0.87078 1.45846 1.12812 1.14255 1.62718 1.17991 0.81968 0.87618 0.78593 1.90877 1.65028 1.28038 1.54389 1.20308 0.93612 0.95215 1.00150 1.22471 1.01723 0.91998 0.98633 1.22913 0.90086 0.99176 0.93530 1.67702 1.09384 1.25032 1.14264 1.22890 1.00563 0.86048 0.95460 1.22291 0.93120 0.91087 1.00981 1.98440 1.74586 1.29474 1.96086 1.23947 0.93018 0.94993 0.91999 1.88789 1.23251 1.59803 1.55700 0.92584 0.93191 0.93326 0.93354 0.93423 0.88212 0.89238 0.76096 0.83227 0.81161 0.81129 0.90931 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.22 13.71 55.49 0.76 -27.45 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 1.06 25.76 25.33 -169.99 -4.31 21.46 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.20 5.50 56.52 0.31 -5.89 16 7 C -0.31 -8.71 10.96 -15.06 -0.17 -8.87 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 N -0.61 -14.53 3.53 -184.63 -0.65 -15.18 16 10 C 0.09 1.94 6.68 -7.90 -0.05 1.88 16 11 C 0.05 0.92 1.66 -90.68 -0.15 0.77 16 12 C 0.13 2.50 8.20 -8.04 -0.07 2.44 16 13 C -0.12 -1.78 6.11 -25.49 -0.16 -1.94 16 14 C 0.11 1.32 3.51 -65.77 -0.23 1.09 16 15 H 0.11 1.35 7.54 -51.93 -0.39 0.95 16 16 N -0.70 -7.34 5.11 -52.58 -0.27 -7.61 16 17 C 0.55 6.32 7.79 -12.22 -0.10 6.22 16 18 O -0.51 -7.15 13.81 5.34 0.07 -7.08 16 19 C -0.08 -0.78 5.91 -104.62 -0.62 -1.40 16 20 C -0.13 -0.90 9.61 -39.03 -0.38 -1.27 16 21 C 0.10 0.67 11.17 -17.60 -0.20 0.48 16 22 N -0.45 -3.86 10.33 -13.27 -0.14 -4.00 16 23 C 0.11 0.88 10.99 -17.54 -0.19 0.69 16 24 C -0.04 -0.43 6.38 -38.90 -0.25 -0.67 16 25 Cl -0.02 -0.16 26.24 -51.86 -1.36 -1.52 16 26 C 0.04 0.49 7.42 38.25 0.28 0.77 16 27 O -0.36 -5.56 11.32 -35.23 -0.40 -5.96 16 28 H 0.26 7.99 8.73 -40.82 -0.36 7.64 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.03 3.52 -51.93 -0.18 0.85 16 31 H 0.05 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.57 6.78 -51.93 -0.35 1.21 16 34 H 0.09 1.22 7.70 -51.93 -0.40 0.82 16 35 H 0.40 3.45 6.77 -40.82 -0.28 3.18 16 36 H 0.15 0.70 6.54 -52.48 -0.34 0.36 16 37 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -33.43 343.21 -8.04 -41.47 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.56 Total: 1.10 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.36 Total: -0.40 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.30 Total: -54.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.33 Total: -13.04 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.31 Total: 21.46 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.36 Total: -1.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.43 -8.04 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053937236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.673 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds