Wall clock time and date at job start Tue Mar 31 2020 19:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00329 * 2 1 4 4 H 1.48493 * 109.47414 * 270.00405 * 3 2 1 5 5 H 1.48505 * 109.46890 * 30.00325 * 3 2 1 6 6 H 1.48503 * 109.47217 * 149.99931 * 3 2 1 7 7 C 1.38810 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00397 * 337.31330 * 7 2 1 9 9 N 1.36937 * 119.99916 * 157.31370 * 7 2 1 10 10 C 1.47222 * 135.96676 * 350.23806 * 9 7 2 11 11 C 1.52913 * 87.68329 * 153.67146 * 10 9 7 12 12 C 1.47222 * 135.96722 * 170.61092 * 9 7 2 13 13 C 1.53320 * 115.72977 * 270.12404 * 11 10 9 14 14 C 1.55029 * 103.78871 * 229.63979 * 13 11 10 15 15 H 1.08999 * 110.87491 * 139.21635 * 14 13 11 16 16 N 1.46499 * 110.86731 * 262.69736 * 14 13 11 17 17 C 1.34782 * 119.99790 * 205.00062 * 16 14 13 18 18 O 1.21527 * 119.99920 * 359.97438 * 17 16 14 19 19 C 1.48075 * 119.99936 * 179.97438 * 17 16 14 20 20 C 1.39866 * 120.93314 * 359.71201 * 19 17 16 21 21 C 1.38088 * 119.01607 * 179.75370 * 20 19 17 22 22 N 1.31843 * 120.93862 * 0.53762 * 21 20 19 23 23 C 1.31749 * 122.07705 * 359.71212 * 22 21 20 24 24 C 1.38359 * 120.87036 * 0.02563 * 23 22 21 25 25 Cl 1.73595 * 120.52078 * 179.97438 * 24 23 22 26 26 C 1.55059 * 102.13037 * 20.85013 * 14 13 11 27 27 O 1.42844 * 115.81536 * 141.74269 * 11 10 9 28 28 H 0.96993 * 120.00354 * 183.60391 * 1 2 3 29 29 H 1.09001 * 113.49999 * 268.35514 * 10 9 7 30 30 H 1.08996 * 113.50177 * 38.89601 * 10 9 7 31 31 H 1.08998 * 113.50031 * 321.10260 * 12 9 7 32 32 H 1.09003 * 113.50151 * 91.58488 * 12 9 7 33 33 H 1.09006 * 110.56191 * 348.21230 * 13 11 10 34 34 H 1.08994 * 110.56500 * 110.91703 * 13 11 10 35 35 H 0.96997 * 120.00735 * 24.99209 * 16 14 13 36 36 H 1.08003 * 120.49065 * 0.02562 * 20 19 17 37 37 H 1.08005 * 119.52240 * 180.27598 * 21 20 19 38 38 H 1.07995 * 119.56888 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.58766 * 82.03086 * 26 14 13 40 40 H 1.09000 * 110.58912 * 204.78593 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5329 -2.1014 0.3598 9 7 3.3001 -1.2479 -0.4580 10 6 4.2054 -0.3276 -1.1656 11 6 5.3714 -1.0763 -0.5190 12 6 4.3867 -2.2413 -0.4632 13 6 5.8370 -0.5379 0.8389 14 6 7.3732 -0.4064 0.6773 15 1 7.7352 0.5122 1.1391 16 7 8.0586 -1.5742 1.2366 17 6 9.3338 -1.4685 1.6598 18 8 9.9153 -0.4045 1.5771 19 6 10.0264 -2.6487 2.2256 20 6 9.3740 -3.8809 2.3355 21 6 10.0592 -4.9568 2.8644 22 7 11.3066 -4.8317 3.2725 23 6 11.9577 -3.6891 3.1924 24 6 11.3501 -2.5609 2.6708 25 17 12.2163 -1.0598 2.5702 26 6 7.5356 -0.3564 -0.8639 27 8 6.5214 -1.2684 -1.3443 28 1 -0.4850 -0.8383 0.0528 29 1 4.1701 -0.4314 -2.2501 30 1 4.1163 0.7079 -0.8372 31 1 4.4504 -2.8205 0.4579 32 1 4.4000 -2.8662 -1.3563 33 1 5.3885 0.4353 1.0391 34 1 5.5923 -1.2419 1.6342 35 1 7.5947 -2.4235 1.3024 36 1 8.3508 -3.9905 2.0074 37 1 9.5647 -5.9133 2.9489 38 1 12.9789 -3.6322 3.5393 39 1 7.3519 0.6515 -1.2362 40 1 8.5293 -0.6963 -1.1559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053937236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:55 Heat of formation + Delta-G solvation = 11.372639 kcal Electronic energy + Delta-G solvation = -26619.752296 eV Core-core repulsion = 22655.523213 eV Total energy + Delta-G solvation = -3964.229082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04959 -41.44791 -40.08426 -38.17557 -37.60562 -35.69337 -34.51591 -33.94126 -32.18207 -31.55409 -30.11217 -27.36849 -27.11487 -26.13654 -24.62595 -23.44316 -22.88294 -21.78199 -20.73021 -19.56025 -19.48410 -18.23978 -17.47165 -17.39091 -17.25968 -16.74166 -16.53810 -16.34938 -16.09939 -16.03280 -15.40763 -15.15762 -15.13826 -14.97250 -14.65779 -14.24382 -13.85705 -13.42692 -13.29448 -13.04084 -12.84715 -12.80333 -12.69554 -12.57369 -12.31965 -12.22971 -12.11759 -11.59232 -11.38361 -11.31056 -11.05086 -10.78950 -10.55720 -10.49818 -10.10851 -10.01833 -9.26562 -8.68383 -5.46314 -0.58394 -0.18440 0.97310 1.38897 1.48679 1.66743 1.69587 1.83388 2.53027 2.59442 2.68466 2.92721 3.26466 3.31108 3.34825 3.43253 3.49440 3.53256 3.57658 3.68852 3.90805 4.06296 4.29307 4.44957 4.49878 4.53070 4.61766 4.64009 4.66439 4.70281 4.73088 4.76015 4.80157 4.91243 4.96459 5.20141 5.29430 5.34809 5.94264 5.96031 6.32893 6.67010 6.67309 6.98505 7.32574 8.26975 8.85413 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002808 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.127145 B = 9970.709716 C =10576.078119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.075 4.075 3 Si 1.097 2.903 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.246 1.246 7 C -0.297 4.297 8 H 0.051 0.949 9 N -0.643 5.643 10 C 0.079 3.921 11 C 0.082 3.918 12 C 0.131 3.869 13 C -0.121 4.121 14 C 0.122 3.878 15 H 0.115 0.885 16 N -0.696 5.696 17 C 0.555 3.445 18 O -0.539 6.539 19 C -0.097 4.097 20 C -0.118 4.118 21 C 0.102 3.898 22 N -0.470 5.470 23 C 0.108 3.892 24 C -0.059 4.059 25 Cl -0.032 7.032 26 C 0.035 3.965 27 O -0.363 6.363 28 H 0.250 0.750 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.414 0.586 36 H 0.176 0.824 37 H 0.203 0.797 38 H 0.188 0.812 39 H 0.082 0.918 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.477 -7.658 6.054 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.269 4.269 3 Si 0.924 3.076 4 H -0.211 1.211 5 H -0.231 1.231 6 H -0.171 1.171 7 C -0.424 4.424 8 H 0.069 0.931 9 N -0.373 5.373 10 C -0.046 4.046 11 C 0.041 3.959 12 C 0.005 3.995 13 C -0.159 4.159 14 C 0.017 3.983 15 H 0.133 0.867 16 N -0.349 5.349 17 C 0.341 3.659 18 O -0.416 6.416 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.054 4.054 22 N -0.179 5.179 23 C -0.049 4.049 24 C -0.089 4.089 25 Cl -0.003 7.003 26 C -0.042 4.042 27 O -0.280 6.280 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.220 0.780 38 H 0.205 0.795 39 H 0.100 0.900 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 26.984 -6.007 6.199 28.332 hybrid contribution -1.270 -1.128 -0.483 1.766 sum 25.715 -7.135 5.716 27.292 Atomic orbital electron populations 1.71038 1.07007 1.28970 1.53177 1.26963 0.96187 1.04412 0.99329 0.83424 0.74685 0.72176 0.77365 1.21122 1.23076 1.17100 1.19773 0.86948 0.95445 1.40252 0.93083 1.45602 1.10573 1.15703 1.65394 1.23328 0.89094 0.95557 0.96613 1.23195 0.84880 0.97198 0.90618 1.22555 0.84051 0.92486 1.00392 1.22764 0.93179 1.04006 0.95946 1.22468 0.91118 0.90370 0.94367 0.86719 1.45725 1.12580 1.14300 1.62268 1.18228 0.81923 0.87739 0.78013 1.90865 1.65727 1.29327 1.55655 1.20301 0.93799 0.95538 1.01222 1.22752 1.02685 0.90831 0.97590 1.23484 0.89518 1.00340 0.92043 1.67779 1.10354 1.25034 1.14780 1.23146 1.01306 0.85531 0.94925 1.22423 0.93394 0.90901 1.02177 1.98429 1.74974 1.30587 1.96271 1.24136 0.92615 0.95028 0.92419 1.88785 1.23113 1.60400 1.55725 0.94109 0.93658 0.93343 0.91205 0.93231 0.89041 0.88058 0.74832 0.80656 0.78044 0.79472 0.90000 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.59 13.71 21.65 0.30 -60.29 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 1.10 51.41 25.33 68.60 1.74 53.14 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.25 -9.82 5.50 99.48 0.55 -9.27 16 7 C -0.30 -16.61 10.96 84.03 0.92 -15.69 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 N -0.64 -29.57 3.53 -739.18 -2.61 -32.18 16 10 C 0.08 3.14 6.68 83.49 0.56 3.70 16 11 C 0.08 2.52 1.66 -10.83 -0.02 2.50 16 12 C 0.13 4.59 8.20 83.40 0.68 5.27 16 13 C -0.12 -3.06 6.11 31.40 0.19 -2.86 16 14 C 0.12 2.54 3.51 46.39 0.16 2.70 16 15 H 0.11 2.42 7.54 -2.39 -0.02 2.40 16 16 N -0.70 -12.17 5.11 -438.56 -2.24 -14.41 16 17 C 0.55 11.34 7.79 86.85 0.68 12.01 16 18 O -0.54 -14.27 13.81 -3.80 -0.05 -14.32 16 19 C -0.10 -1.63 5.91 -19.86 -0.12 -1.75 16 20 C -0.12 -1.25 9.61 22.63 0.22 -1.03 16 21 C 0.10 1.03 11.17 84.66 0.95 1.98 16 22 N -0.47 -6.78 10.33 -195.91 -2.02 -8.80 16 23 C 0.11 1.56 10.99 84.73 0.93 2.49 16 24 C -0.06 -1.04 6.38 22.71 0.14 -0.89 16 25 Cl -0.03 -0.64 26.24 -2.72 -0.07 -0.71 16 26 C 0.04 0.78 7.42 72.69 0.54 1.32 16 27 O -0.36 -10.06 11.32 -148.98 -1.69 -11.74 16 28 H 0.25 15.82 8.73 -92.71 -0.81 15.01 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.93 3.52 -2.39 -0.01 1.92 16 31 H 0.07 2.16 7.91 -2.39 -0.02 2.14 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.54 6.78 -2.38 -0.02 2.52 16 34 H 0.10 2.35 7.70 -2.39 -0.02 2.33 16 35 H 0.41 5.40 6.77 -92.71 -0.63 4.77 16 36 H 0.18 0.85 6.54 -2.91 -0.02 0.83 16 37 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -73.87 343.21 -0.07 -73.94 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.28 Total: 9.54 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.30 Total: 5.84 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -6.57 Total: -115.68 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.74 Total: -26.06 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.74 Total: 53.14 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.07 Total: -0.71 kcal Total: -73.87 -0.07 -73.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053937236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.313 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds