Wall clock time and date at job start Tue Mar 31 2020 19:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30197 * 127.37457 * 2 1 4 4 O 1.20996 * 113.37302 * 180.02562 * 3 2 1 5 5 C 1.34066 * 112.97270 * 359.97438 * 4 3 2 6 6 N 1.32605 * 136.37739 * 180.02562 * 5 4 3 7 7 C 1.31768 * 120.66006 * 179.97438 * 6 5 4 8 8 N 1.32005 * 122.90152 * 0.02562 * 7 6 5 9 9 C 1.33269 * 120.90484 * 359.97438 * 8 7 6 10 10 N 1.38037 * 120.95366 * 179.97438 * 9 8 7 11 11 C 1.46496 * 119.99944 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47030 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00137 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47228 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99904 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99972 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99962 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99837 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47564 * 59.99730 * 22 20 18 24 24 H 1.48502 * 109.47363 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46963 * 299.99822 * 22 20 18 26 26 C 1.39751 * 118.08964 * 0.25195 * 9 8 7 27 27 H 1.08999 * 109.46897 * 89.97625 * 1 2 3 28 28 H 1.08997 * 109.47337 * 209.98023 * 1 2 3 29 29 H 1.09000 * 109.46970 * 329.98042 * 1 2 3 30 30 H 1.07997 * 118.54998 * 180.02562 * 7 6 5 31 31 H 0.96999 * 119.99970 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47074 * 60.00542 * 11 10 9 33 33 H 1.09004 * 109.47714 * 300.00451 * 11 10 9 34 34 H 1.09004 * 109.46930 * 60.00232 * 12 11 10 35 35 H 1.09000 * 109.47312 * 300.00176 * 12 11 10 36 36 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.46978 * 300.00347 * 16 14 13 38 38 H 1.08996 * 109.47197 * 59.99985 * 16 14 13 39 39 H 0.97002 * 119.99547 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2973 1.0347 0.0000 4 8 3.4713 0.7419 -0.0005 5 6 3.6804 -0.5824 -0.0004 6 7 4.7337 -1.3879 -0.0003 7 6 4.5789 -2.6964 0.0003 8 7 3.3940 -3.2783 0.0004 9 6 2.2756 -2.5537 0.0004 10 7 1.0361 -3.1611 0.0000 11 6 0.9366 -4.6227 -0.0010 12 6 -0.5372 -5.0335 -0.0019 13 7 -0.6367 -6.4952 -0.0023 14 6 -1.8470 -7.0883 -0.0026 15 8 -2.8537 -6.4119 -0.0030 16 6 -1.9493 -8.5917 -0.0024 17 16 -3.6929 -9.0778 -0.0036 18 6 -3.5216 -10.8315 -0.0024 19 1 -2.5383 -11.2780 -0.0008 20 6 -4.6505 -11.6390 -0.0024 21 7 -5.8490 -11.0947 -0.0038 22 14 -4.4690 -13.4981 -0.0003 23 1 -3.7250 -13.9216 1.2130 24 1 -5.8143 -14.1269 -0.0013 25 1 -3.7234 -13.9239 -1.2119 26 6 2.3937 -1.1612 -0.0052 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 5.4604 -3.3204 0.0007 31 1 0.2309 -2.6202 -0.0004 32 1 1.4245 -5.0206 0.8888 33 1 1.4246 -5.0196 -0.8912 34 1 -1.0248 -4.6356 -0.8919 35 1 -1.0256 -4.6367 0.8881 36 1 0.1685 -7.0361 -0.0016 37 1 -1.4610 -8.9893 -0.8921 38 1 -1.4617 -8.9890 0.8878 39 1 -6.6379 -11.6591 -0.0041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093526759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:58 Heat of formation + Delta-G solvation = 72.194162 kcal Electronic energy + Delta-G solvation = -24647.880391 eV Core-core repulsion = 20720.625185 eV Total energy + Delta-G solvation = -3927.255206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.21782 -40.98110 -39.39982 -37.56965 -35.35506 -34.59152 -33.29351 -32.47966 -31.74083 -30.07697 -29.41328 -28.10601 -25.58743 -25.24087 -25.02819 -22.90640 -21.85421 -20.58069 -19.28162 -18.68494 -18.34247 -18.08682 -17.86567 -16.63681 -16.23973 -16.02390 -15.81994 -15.19007 -15.12906 -14.84872 -14.51803 -14.47071 -14.10090 -14.06806 -13.90399 -13.44615 -13.27795 -12.99327 -12.62949 -12.43151 -12.22111 -12.08213 -11.64908 -11.27497 -11.10082 -11.07632 -10.81852 -10.57426 -10.38593 -9.90219 -9.88374 -9.59903 -9.16018 -9.08906 -8.78944 -8.31748 -6.56802 -6.26705 -3.98159 0.10591 0.51837 1.54634 1.79021 2.08936 2.93202 2.97839 3.17004 3.20120 3.23461 3.24788 3.27415 3.44911 3.59531 3.76146 3.92279 4.15209 4.18118 4.27880 4.50902 4.62700 4.76363 4.85113 4.97282 4.98608 5.04430 5.08648 5.36637 5.39870 5.44050 5.51422 5.65166 5.79690 5.93088 6.05173 6.25991 6.35654 6.72439 7.48311 7.48752 7.54613 7.73534 8.29895 8.42727 9.18659 10.80633 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.001670 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.577074 B =16764.042849 C =17632.568147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 N -0.328 5.328 4 O 0.083 5.917 5 C 0.287 3.713 6 N -0.542 5.542 7 C 0.390 3.610 8 N -0.582 5.582 9 C 0.521 3.479 10 N -0.688 5.688 11 C 0.112 3.888 12 C 0.108 3.892 13 N -0.736 5.736 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.339 4.339 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.216 0.784 31 H 0.416 0.584 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.196 19.043 -0.018 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 N -0.039 5.039 4 O 0.032 5.968 5 C 0.098 3.902 6 N -0.272 5.272 7 C 0.100 3.900 8 N -0.311 5.311 9 C 0.270 3.730 10 N -0.319 5.319 11 C -0.012 4.012 12 C -0.017 4.017 13 N -0.392 5.392 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.353 4.353 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.232 0.768 31 H 0.255 0.745 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.926 20.806 -0.018 27.463 hybrid contribution 0.713 -2.270 0.007 2.379 sum 18.639 18.536 -0.010 26.287 Atomic orbital electron populations 1.20361 0.84550 1.04643 1.04482 1.24105 0.98168 0.86420 0.99230 1.73660 0.88424 1.22498 1.19346 1.84891 1.20542 1.19010 1.72367 1.21582 0.89786 0.86406 0.92405 1.67373 1.31288 1.04207 1.24312 1.25000 0.94240 0.85994 0.84759 1.68366 0.97707 1.38729 1.26317 1.17601 0.87153 0.84630 0.83612 1.44474 1.04204 1.07633 1.75611 1.21636 0.96705 0.78684 1.04138 1.21311 0.94529 0.82566 1.03278 1.45771 1.09115 1.05820 1.78489 1.20349 0.82384 0.90255 0.74903 1.90714 1.35341 1.65531 1.47251 1.23529 1.08685 0.93044 1.05148 1.85403 0.95612 1.05550 1.96756 1.22819 0.95501 0.90961 1.59244 0.90898 1.24995 0.94454 0.99658 0.94458 1.70005 0.97574 1.36026 1.46653 0.86214 0.77545 0.82858 0.78828 1.19910 1.20795 1.19915 1.20976 0.96695 0.94898 1.22700 0.88748 0.89923 0.88974 0.76775 0.74538 0.89843 0.89844 0.90844 0.90871 0.76371 0.89012 0.89012 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.09 36.00 0.36 0.00 16 2 C 0.09 0.74 7.57 -80.13 -0.61 0.13 16 3 N -0.33 -3.32 11.96 34.84 0.42 -2.90 16 4 O 0.08 0.90 11.11 17.09 0.19 1.08 16 5 C 0.29 2.97 8.82 -16.14 -0.14 2.83 16 6 N -0.54 -5.21 10.46 -14.53 -0.15 -5.36 16 7 C 0.39 2.84 12.22 -92.00 -1.12 1.72 16 8 N -0.58 -4.78 9.74 -13.79 -0.13 -4.91 16 9 C 0.52 4.28 7.53 -154.97 -1.17 3.12 16 10 N -0.69 -4.30 5.68 -60.30 -0.34 -4.64 16 11 C 0.11 0.70 5.85 -4.04 -0.02 0.68 16 12 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 13 N -0.74 -7.99 5.56 -60.29 -0.33 -8.33 16 14 C 0.53 8.95 7.85 -10.99 -0.09 8.87 16 15 O -0.51 -10.73 15.86 5.55 0.09 -10.64 16 16 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 22 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.34 -3.05 6.48 -105.10 -0.68 -3.73 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.23 6.48 -51.93 -0.34 -0.10 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.42 1.95 6.33 -40.82 -0.26 1.69 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 3.18 8.47 -40.82 -0.35 2.83 16 37 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -36.32 358.96 -8.72 -45.04 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.29 Total: -1.26 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.07 Total: -0.73 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.19 Total: -51.01 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.28 Total: -9.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.32 -8.72 -45.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093526759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.237 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds