Wall clock time and date at job start Tue Mar 31 2020 19:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30197 * 127.37457 * 2 1 4 4 O 1.20996 * 113.37302 * 180.02562 * 3 2 1 5 5 C 1.34066 * 112.97270 * 359.97438 * 4 3 2 6 6 N 1.32605 * 136.37739 * 180.02562 * 5 4 3 7 7 C 1.31768 * 120.66006 * 179.97438 * 6 5 4 8 8 N 1.32005 * 122.90152 * 0.02562 * 7 6 5 9 9 C 1.33269 * 120.90484 * 359.97438 * 8 7 6 10 10 N 1.38037 * 120.95366 * 179.97438 * 9 8 7 11 11 C 1.46496 * 119.99944 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47030 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.47035 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00137 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47228 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99904 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99972 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99962 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99837 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47564 * 59.99730 * 22 20 18 24 24 H 1.48502 * 109.47363 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46963 * 299.99822 * 22 20 18 26 26 C 1.39751 * 118.08964 * 0.25195 * 9 8 7 27 27 H 1.08999 * 109.46897 * 89.97625 * 1 2 3 28 28 H 1.08997 * 109.47337 * 209.98023 * 1 2 3 29 29 H 1.09000 * 109.46970 * 329.98042 * 1 2 3 30 30 H 1.07997 * 118.54998 * 180.02562 * 7 6 5 31 31 H 0.96999 * 119.99970 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47074 * 60.00542 * 11 10 9 33 33 H 1.09004 * 109.47714 * 300.00451 * 11 10 9 34 34 H 1.09004 * 109.46930 * 60.00232 * 12 11 10 35 35 H 1.09000 * 109.47312 * 300.00176 * 12 11 10 36 36 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.46978 * 300.00347 * 16 14 13 38 38 H 1.08996 * 109.47197 * 59.99985 * 16 14 13 39 39 H 0.97002 * 119.99547 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2973 1.0347 0.0000 4 8 3.4713 0.7419 -0.0005 5 6 3.6804 -0.5824 -0.0004 6 7 4.7337 -1.3879 -0.0003 7 6 4.5789 -2.6964 0.0003 8 7 3.3940 -3.2783 0.0004 9 6 2.2756 -2.5537 0.0004 10 7 1.0361 -3.1611 0.0000 11 6 0.9366 -4.6227 -0.0010 12 6 -0.5372 -5.0335 -0.0019 13 7 -0.6367 -6.4952 -0.0023 14 6 -1.8470 -7.0883 -0.0026 15 8 -2.8537 -6.4119 -0.0030 16 6 -1.9493 -8.5917 -0.0024 17 16 -3.6929 -9.0778 -0.0036 18 6 -3.5216 -10.8315 -0.0024 19 1 -2.5383 -11.2780 -0.0008 20 6 -4.6505 -11.6390 -0.0024 21 7 -5.8490 -11.0947 -0.0038 22 14 -4.4690 -13.4981 -0.0003 23 1 -3.7250 -13.9216 1.2130 24 1 -5.8143 -14.1269 -0.0013 25 1 -3.7234 -13.9239 -1.2119 26 6 2.3937 -1.1612 -0.0052 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 5.4604 -3.3204 0.0007 31 1 0.2309 -2.6202 -0.0004 32 1 1.4245 -5.0206 0.8888 33 1 1.4246 -5.0196 -0.8912 34 1 -1.0248 -4.6356 -0.8919 35 1 -1.0256 -4.6367 0.8881 36 1 0.1685 -7.0361 -0.0016 37 1 -1.4610 -8.9893 -0.8921 38 1 -1.4617 -8.9890 0.8878 39 1 -6.6379 -11.6591 -0.0041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093526759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:58 Heat of formation + Delta-G solvation = 44.467741 kcal Electronic energy + Delta-G solvation = -24649.082699 eV Core-core repulsion = 20720.625185 eV Total energy + Delta-G solvation = -3928.457514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.86945 -41.58903 -40.62969 -38.24948 -36.14770 -35.39008 -34.56640 -33.96554 -32.50671 -31.21211 -29.88633 -29.06658 -27.63167 -25.95271 -25.63710 -23.59926 -22.50148 -21.76892 -19.96022 -19.80047 -19.27293 -19.02721 -18.66295 -17.86815 -17.07165 -17.02446 -16.85978 -16.63495 -16.14433 -15.87828 -15.58269 -15.32162 -15.05938 -14.70209 -14.61659 -14.46771 -14.35886 -13.87430 -13.81237 -13.25815 -13.15110 -13.04204 -12.89615 -12.85197 -12.60542 -12.36925 -11.86982 -11.73505 -11.20778 -11.11286 -11.02334 -10.98917 -10.52374 -10.25848 -10.17120 -9.39187 -8.64383 -8.33172 -6.10692 -0.50187 -0.13047 0.92441 1.14961 1.23573 1.42096 1.45182 1.53052 1.61174 1.67773 2.28799 2.41771 2.55994 2.65409 2.88557 3.01190 3.18568 3.32823 3.34102 3.58047 3.66192 3.96389 4.02474 4.03269 4.33508 4.34625 4.41347 4.55008 4.55934 4.59575 4.79865 4.82278 4.99648 5.04726 5.33298 5.39526 5.43800 5.67936 6.19698 6.21294 6.47128 6.86515 7.08578 7.09608 7.22672 8.75536 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.001670 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.577074 B =16764.042849 C =17632.568147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.102 3.898 3 N -0.355 5.355 4 O 0.061 5.939 5 C 0.268 3.732 6 N -0.563 5.563 7 C 0.393 3.607 8 N -0.588 5.588 9 C 0.520 3.480 10 N -0.678 5.678 11 C 0.125 3.875 12 C 0.110 3.890 13 N -0.709 5.709 14 C 0.538 3.462 15 O -0.563 6.563 16 C -0.131 4.131 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.262 1.262 26 C -0.349 4.349 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.423 0.577 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.420 0.580 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.878 17.686 -0.030 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 N -0.071 5.071 4 O 0.014 5.986 5 C 0.079 3.921 6 N -0.294 5.294 7 C 0.104 3.896 8 N -0.318 5.318 9 C 0.268 3.732 10 N -0.309 5.309 11 C 0.001 3.999 12 C -0.014 4.014 13 N -0.364 5.364 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.206 1.206 25 H -0.187 1.187 26 C -0.362 4.362 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.268 0.732 31 H 0.264 0.736 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.684 19.455 -0.029 27.676 hybrid contribution 0.285 -1.789 0.010 1.812 sum 19.969 17.666 -0.019 26.662 Atomic orbital electron populations 1.20592 0.82004 1.05875 1.05808 1.24707 0.99536 0.85626 0.96943 1.73662 0.88477 1.23459 1.21464 1.84840 1.21094 1.19560 1.73152 1.21886 0.90824 0.86491 0.92859 1.67435 1.31494 1.05063 1.25444 1.25797 0.95201 0.85580 0.82993 1.68451 0.97917 1.38632 1.26762 1.17695 0.87731 0.84410 0.83408 1.44430 1.03988 1.07741 1.74789 1.21504 0.94855 0.78564 1.04938 1.21394 0.96179 0.80584 1.03273 1.45426 1.07856 1.07212 1.75937 1.19988 0.83403 0.89286 0.74985 1.90707 1.37332 1.66053 1.49944 1.23376 1.02859 0.94910 1.07066 1.85563 1.03478 1.06389 1.97069 1.23182 0.96144 0.91287 1.58801 0.89789 1.26106 0.93986 1.05252 0.93821 1.70174 0.98536 1.38013 1.48018 0.85029 0.77697 0.75947 0.79496 1.18666 1.20594 1.18676 1.21099 0.96367 0.95451 1.23316 0.87201 0.88144 0.88283 0.73162 0.73628 0.89035 0.89042 0.90940 0.90960 0.74193 0.86983 0.86981 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.09 71.23 0.72 0.12 16 2 C 0.10 1.58 7.57 44.84 0.34 1.92 16 3 N -0.36 -7.33 11.96 -43.79 -0.52 -7.85 16 4 O 0.06 1.36 11.11 71.30 0.79 2.16 16 5 C 0.27 5.58 8.82 85.27 0.75 6.33 16 6 N -0.56 -10.53 10.46 -313.45 -3.28 -13.81 16 7 C 0.39 5.03 12.22 180.83 2.21 7.24 16 8 N -0.59 -8.31 9.74 -197.56 -1.92 -10.23 16 9 C 0.52 7.51 7.53 133.28 1.00 8.51 16 10 N -0.68 -6.65 5.68 -344.70 -1.96 -8.61 16 11 C 0.13 1.14 5.85 86.38 0.51 1.65 16 12 C 0.11 1.56 5.79 86.38 0.50 2.06 16 13 N -0.71 -13.28 5.56 -463.04 -2.57 -15.86 16 14 C 0.54 17.13 7.85 87.66 0.69 17.82 16 15 O -0.56 -23.32 15.86 -3.04 -0.05 -23.37 16 16 C -0.13 -4.67 6.16 71.23 0.44 -4.23 16 17 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 18 C -0.55 -30.08 9.50 67.95 0.65 -29.44 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -54.71 13.22 21.65 0.29 -54.43 16 22 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 C -0.35 -5.97 6.48 -20.17 -0.13 -6.10 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.33 6.48 -2.39 -0.02 0.31 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.42 2.84 6.33 -92.71 -0.59 2.25 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 4.98 8.47 -92.71 -0.79 4.19 16 37 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 38 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -81.93 358.96 -0.46 -82.39 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.24 Total: 7.38 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 8.14 Total: 7.07 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -9.97 Total: -110.78 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.74 Total: -21.21 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -81.93 -0.46 -82.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093526759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.855 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds