Wall clock time and date at job start Tue Mar 31 2020 19:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48491 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47198 * 300.00565 * 3 2 1 6 6 H 1.48504 * 109.46571 * 60.00172 * 3 2 1 7 7 C 1.38816 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49023 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11388 * 155.36033 * 10 9 7 12 12 N 1.46498 * 113.73921 * 137.95651 * 11 10 9 13 13 C 1.46862 * 124.34073 * 121.90230 * 12 11 10 14 14 C 1.54478 * 105.42566 * 197.01943 * 13 12 11 15 15 H 1.09006 * 110.97025 * 216.43905 * 14 13 12 16 16 N 1.46503 * 110.97340 * 92.71125 * 14 13 12 17 17 C 1.34770 * 119.99946 * 158.09238 * 16 14 13 18 18 O 1.21565 * 120.00181 * 359.97438 * 17 16 14 19 19 C 1.47754 * 120.00215 * 179.97438 * 17 16 14 20 20 C 1.39353 * 124.12023 * 179.97438 * 19 17 16 21 21 N 1.30092 * 112.14320 * 180.02562 * 20 19 17 22 22 S 1.55917 * 108.75644 * 0.02562 * 21 20 19 23 23 N 1.31494 * 124.10959 * 0.02562 * 19 17 16 24 24 C 1.54634 * 101.79644 * 334.57217 * 14 13 12 25 25 C 1.34420 * 124.35172 * 301.89255 * 12 11 10 26 26 O 1.21284 * 124.93935 * 359.55581 * 25 12 11 27 27 C 1.47817 * 134.45696 * 359.86609 * 9 7 2 28 28 H 0.96997 * 119.99952 * 359.97438 * 1 2 3 29 29 H 1.08995 * 113.77007 * 41.05796 * 10 9 7 30 30 H 1.09003 * 113.77049 * 269.65774 * 10 9 7 31 31 H 1.09008 * 113.73869 * 269.15428 * 11 10 9 32 32 H 1.09001 * 110.26633 * 78.03534 * 13 12 11 33 33 H 1.09006 * 110.27830 * 316.00110 * 13 12 11 34 34 H 0.96996 * 119.99528 * 338.08685 * 16 14 13 35 35 H 1.07993 * 123.92377 * 0.02562 * 20 19 17 36 36 H 1.09000 * 110.48512 * 143.49541 * 24 14 13 37 37 H 1.09003 * 110.48414 * 266.13926 * 24 14 13 38 38 H 1.08994 * 113.76778 * 90.38049 * 27 9 7 39 39 H 1.08994 * 113.83413 * 318.91837 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8102 -0.0029 11 6 0.3470 -4.0835 0.6372 12 7 -0.3333 -5.2614 0.0933 13 6 -0.7614 -6.4148 0.8953 14 6 -1.0127 -7.5511 -0.1206 15 1 -1.8629 -8.1630 0.1810 16 7 0.1868 -8.3741 -0.2941 17 6 0.0784 -9.6326 -0.7639 18 8 -1.0148 -10.0851 -1.0432 19 6 1.2882 -10.4625 -0.9395 20 6 1.2756 -11.7715 -1.4171 21 7 2.4702 -12.2829 -1.4778 22 16 3.4967 -11.2190 -0.9823 23 7 2.5078 -10.0559 -0.6631 24 6 -1.3311 -6.7582 -1.4094 25 6 -0.6459 -5.4253 -1.2037 26 8 -0.4131 -4.6212 -2.0813 27 6 -0.1058 -2.7571 0.0001 28 1 -0.4850 0.8400 0.0004 29 1 2.5624 -4.0330 0.6521 30 1 1.8319 -4.2342 -1.0008 31 1 0.3595 -4.0654 1.7271 32 1 -1.6797 -6.1803 1.4337 33 1 0.0241 -6.7011 1.5947 34 1 1.0590 -8.0131 -0.0709 35 1 0.3784 -12.3000 -1.7035 36 1 -0.9210 -7.2673 -2.2816 37 1 -2.4071 -6.6214 -1.5171 38 1 -0.5311 -2.8713 -0.9969 39 1 -0.7188 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094706386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:47 Heat of formation + Delta-G solvation = 68.817140 kcal Electronic energy + Delta-G solvation = -26375.924941 eV Core-core repulsion = 22448.523296 eV Total energy + Delta-G solvation = -3927.401644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58811 -40.62483 -39.20441 -37.26346 -36.42329 -34.45869 -33.66891 -32.16583 -30.49141 -28.07821 -27.55916 -27.00030 -24.74268 -23.98428 -23.36701 -21.66110 -20.86896 -20.37475 -19.83013 -18.32848 -18.18299 -17.08347 -16.70742 -16.48895 -16.29368 -15.85341 -15.24335 -15.05484 -14.79063 -14.68241 -14.11432 -13.89627 -13.52860 -13.41911 -13.01405 -12.69979 -12.56993 -11.98238 -11.90412 -11.85633 -11.73323 -11.64516 -11.47979 -11.42677 -11.36296 -10.85655 -10.70486 -10.53608 -10.20534 -9.96378 -9.77588 -9.61922 -9.50652 -9.20376 -8.67237 -8.20159 -6.81954 -5.72845 -3.04777 -0.02815 0.93496 1.09343 1.16832 2.58801 2.68064 2.93011 3.23027 3.41617 3.46919 3.49248 3.99595 4.17687 4.35649 4.38124 4.50779 4.65146 4.70662 4.99187 5.03011 5.23337 5.32854 5.38120 5.48654 5.53586 5.64146 5.66935 5.82984 5.90593 6.06488 6.27432 6.50392 6.56564 6.86266 7.02029 7.28916 7.48201 7.58550 7.62638 7.65069 8.00770 8.54863 9.08005 9.74158 10.63086 11.44456 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.002526 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.244490 B =11081.038491 C =12069.664898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.099 3.901 12 N -0.610 5.610 13 C 0.095 3.905 14 C 0.133 3.867 15 H 0.121 0.879 16 N -0.699 5.699 17 C 0.610 3.390 18 O -0.520 6.520 19 C 0.008 3.992 20 C 0.091 3.909 21 N -0.580 5.580 22 S 0.729 5.271 23 N -0.545 5.545 24 C -0.167 4.167 25 C 0.512 3.488 26 O -0.508 6.508 27 C 0.153 3.847 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.215 0.785 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -26.328 2.641 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.029 4.029 14 C 0.028 3.972 15 H 0.139 0.861 16 N -0.351 5.351 17 C 0.390 3.610 18 O -0.395 6.395 19 C -0.167 4.167 20 C -0.102 4.102 21 N -0.420 5.420 22 S 0.770 5.230 23 N -0.395 5.395 24 C -0.208 4.208 25 C 0.298 3.702 26 O -0.383 6.383 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.250 0.750 35 H 0.232 0.768 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.543 -25.901 2.183 26.117 hybrid contribution -0.876 1.124 -0.155 1.433 sum 1.667 -24.778 2.028 24.917 Atomic orbital electron populations 1.69839 1.05014 1.25184 1.56540 1.24806 0.95695 0.97552 1.02455 0.86029 0.78695 0.83691 0.77242 1.20471 1.21730 1.21707 1.19029 0.90204 0.81723 1.43793 0.90170 1.45715 1.02454 0.99124 1.85821 1.22912 0.94183 0.86974 0.97469 1.24068 0.94170 0.83824 0.98327 1.48564 1.58804 1.19117 1.08012 1.22363 1.01771 0.84977 0.93800 1.21980 0.88555 0.91418 0.95265 0.86119 1.45833 1.11338 1.12747 1.65188 1.16702 0.85734 0.81078 0.77480 1.90850 1.25912 1.72410 1.50301 1.22483 0.91723 0.95874 1.06571 1.23786 0.96153 0.92065 0.98240 1.72271 1.07747 1.37170 1.24851 1.79195 1.18081 0.87062 1.38613 1.72454 1.07557 1.36446 1.23054 1.22842 1.03467 0.95144 0.99380 1.20669 0.78854 0.88074 0.82602 1.90794 1.54090 1.47840 1.45557 1.22787 0.88274 0.87226 0.99004 0.93700 0.94020 0.94356 0.87642 0.89264 0.89726 0.74957 0.76842 0.88065 0.86755 0.92595 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.11 11.39 55.49 0.63 -27.47 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -16.21 3.70 -177.89 -0.66 -16.86 16 10 C 0.11 2.40 8.44 -2.97 -0.03 2.37 16 11 C 0.10 1.83 4.81 -70.15 -0.34 1.49 16 12 N -0.61 -8.93 3.16 -166.56 -0.53 -9.46 16 13 C 0.10 0.88 6.97 -3.07 -0.02 0.86 16 14 C 0.13 1.17 3.48 -66.29 -0.23 0.94 16 15 H 0.12 0.90 7.63 -51.93 -0.40 0.50 16 16 N -0.70 -6.32 5.14 -53.19 -0.27 -6.59 16 17 C 0.61 5.99 7.82 -12.37 -0.10 5.89 16 18 O -0.52 -6.06 16.49 5.31 0.09 -5.97 16 19 C 0.01 0.08 6.81 -83.71 -0.57 -0.49 16 20 C 0.09 0.71 11.22 -17.87 -0.20 0.51 16 21 N -0.58 -4.66 11.41 19.42 0.22 -4.44 16 22 S 0.73 4.64 23.69 -107.50 -2.55 2.10 16 23 N -0.54 -4.68 11.00 23.18 0.26 -4.43 16 24 C -0.17 -1.89 6.59 -26.74 -0.18 -2.06 16 25 C 0.51 8.40 7.42 -10.86 -0.08 8.32 16 26 O -0.51 -11.20 14.61 5.55 0.08 -11.12 16 27 C 0.15 3.79 6.90 -2.83 -0.02 3.77 16 28 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.88 7.25 -51.93 -0.38 0.50 16 31 H 0.11 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.41 3.71 8.21 -40.82 -0.33 3.38 16 35 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.53 5.72 -51.93 -0.30 1.24 16 39 H 0.07 1.89 7.16 -51.93 -0.37 1.51 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -37.19 347.00 -8.81 -46.00 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.27 Total: 0.66 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -2.01 Total: 14.70 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.35 Total: -69.25 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.17 Total: -17.09 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.55 Total: 2.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.19 -8.81 -46.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094706386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.816 kcal (2) G-P(sol) polarization free energy of solvation -37.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds