Wall clock time and date at job start Tue Mar 31 2020 19:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00031 * 2 1 4 4 H 1.48491 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47198 * 300.00565 * 3 2 1 6 6 H 1.48504 * 109.46571 * 60.00172 * 3 2 1 7 7 C 1.38816 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49023 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11388 * 155.36033 * 10 9 7 12 12 N 1.46498 * 113.73921 * 137.95651 * 11 10 9 13 13 C 1.46862 * 124.34073 * 121.90230 * 12 11 10 14 14 C 1.54478 * 105.42566 * 197.01943 * 13 12 11 15 15 H 1.09006 * 110.97025 * 216.43905 * 14 13 12 16 16 N 1.46503 * 110.97340 * 92.71125 * 14 13 12 17 17 C 1.34770 * 119.99946 * 158.09238 * 16 14 13 18 18 O 1.21565 * 120.00181 * 359.97438 * 17 16 14 19 19 C 1.47754 * 120.00215 * 179.97438 * 17 16 14 20 20 C 1.39353 * 124.12023 * 179.97438 * 19 17 16 21 21 N 1.30092 * 112.14320 * 180.02562 * 20 19 17 22 22 S 1.55917 * 108.75644 * 0.02562 * 21 20 19 23 23 N 1.31494 * 124.10959 * 0.02562 * 19 17 16 24 24 C 1.54634 * 101.79644 * 334.57217 * 14 13 12 25 25 C 1.34420 * 124.35172 * 301.89255 * 12 11 10 26 26 O 1.21284 * 124.93935 * 359.55581 * 25 12 11 27 27 C 1.47817 * 134.45696 * 359.86609 * 9 7 2 28 28 H 0.96997 * 119.99952 * 359.97438 * 1 2 3 29 29 H 1.08995 * 113.77007 * 41.05796 * 10 9 7 30 30 H 1.09003 * 113.77049 * 269.65774 * 10 9 7 31 31 H 1.09008 * 113.73869 * 269.15428 * 11 10 9 32 32 H 1.09001 * 110.26633 * 78.03534 * 13 12 11 33 33 H 1.09006 * 110.27830 * 316.00110 * 13 12 11 34 34 H 0.96996 * 119.99528 * 338.08685 * 16 14 13 35 35 H 1.07993 * 123.92377 * 0.02562 * 20 19 17 36 36 H 1.09000 * 110.48512 * 143.49541 * 24 14 13 37 37 H 1.09003 * 110.48414 * 266.13926 * 24 14 13 38 38 H 1.08994 * 113.76778 * 90.38049 * 27 9 7 39 39 H 1.08994 * 113.83413 * 318.91837 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8102 -0.0029 11 6 0.3470 -4.0835 0.6372 12 7 -0.3333 -5.2614 0.0933 13 6 -0.7614 -6.4148 0.8953 14 6 -1.0127 -7.5511 -0.1206 15 1 -1.8629 -8.1630 0.1810 16 7 0.1868 -8.3741 -0.2941 17 6 0.0784 -9.6326 -0.7639 18 8 -1.0148 -10.0851 -1.0432 19 6 1.2882 -10.4625 -0.9395 20 6 1.2756 -11.7715 -1.4171 21 7 2.4702 -12.2829 -1.4778 22 16 3.4967 -11.2190 -0.9823 23 7 2.5078 -10.0559 -0.6631 24 6 -1.3311 -6.7582 -1.4094 25 6 -0.6459 -5.4253 -1.2037 26 8 -0.4131 -4.6212 -2.0813 27 6 -0.1058 -2.7571 0.0001 28 1 -0.4850 0.8400 0.0004 29 1 2.5624 -4.0330 0.6521 30 1 1.8319 -4.2342 -1.0008 31 1 0.3595 -4.0654 1.7271 32 1 -1.6797 -6.1803 1.4337 33 1 0.0241 -6.7011 1.5947 34 1 1.0590 -8.0131 -0.0709 35 1 0.3784 -12.3000 -1.7035 36 1 -0.9210 -7.2673 -2.2816 37 1 -2.4071 -6.6214 -1.5171 38 1 -0.5311 -2.8713 -0.9969 39 1 -0.7188 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094706386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:46 Heat of formation + Delta-G solvation = 38.657557 kcal Electronic energy + Delta-G solvation = -26377.232758 eV Core-core repulsion = 22448.523296 eV Total energy + Delta-G solvation = -3928.709462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27131 -41.72177 -40.11016 -38.89822 -37.61101 -35.33905 -34.60989 -34.01102 -31.71902 -29.24577 -28.83573 -28.04830 -26.61309 -25.30925 -24.52373 -22.49978 -22.09960 -21.50438 -20.39908 -19.73404 -18.90699 -18.79144 -17.89747 -17.66716 -17.12828 -16.92216 -16.47733 -16.38702 -15.88910 -15.72579 -15.53772 -15.17605 -14.90563 -14.60089 -14.21874 -14.11269 -13.43110 -13.41873 -13.25999 -13.16365 -12.86501 -12.78594 -12.69643 -12.50201 -12.43144 -12.25862 -12.07539 -12.01085 -11.85672 -11.53316 -11.25602 -11.07827 -10.66468 -10.31806 -10.09706 -9.56007 -8.94451 -7.93332 -5.27806 -0.63156 0.37673 0.47540 0.63772 1.42493 1.45326 1.55398 1.62943 1.90394 1.95942 2.04290 2.47873 3.24766 3.32475 3.42278 3.45959 3.47355 3.69857 3.79609 3.86267 4.06631 4.23419 4.26043 4.51818 4.52650 4.64968 4.68117 4.77619 4.78260 4.87427 4.92551 5.21408 5.22605 5.27824 5.39145 5.48005 5.85620 5.89663 6.28122 6.30757 6.87910 6.93562 7.26428 7.56778 8.52374 9.24088 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.002526 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.244490 B =11081.038491 C =12069.664898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.086 0.914 9 N -0.635 5.635 10 C 0.114 3.886 11 C 0.138 3.862 12 N -0.607 5.607 13 C 0.095 3.905 14 C 0.146 3.854 15 H 0.147 0.853 16 N -0.697 5.697 17 C 0.613 3.387 18 O -0.540 6.540 19 C -0.007 4.007 20 C 0.090 3.910 21 N -0.600 5.600 22 S 0.786 5.214 23 N -0.565 5.565 24 C -0.155 4.155 25 C 0.499 3.501 26 O -0.576 6.576 27 C 0.148 3.852 28 H 0.249 0.751 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.415 0.585 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.021 0.979 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -28.428 4.330 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.212 1.212 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.362 5.362 10 C -0.013 4.013 11 C 0.034 3.966 12 N -0.341 5.341 13 C -0.027 4.027 14 C 0.041 3.959 15 H 0.165 0.835 16 N -0.348 5.348 17 C 0.394 3.606 18 O -0.417 6.417 19 C -0.180 4.180 20 C -0.102 4.102 21 N -0.442 5.442 22 S 0.827 5.173 23 N -0.417 5.417 24 C -0.196 4.196 25 C 0.288 3.712 26 O -0.456 6.456 27 C 0.022 3.978 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.252 0.748 35 H 0.244 0.756 36 H 0.114 0.886 37 H 0.153 0.847 38 H 0.039 0.961 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.299 -28.083 3.915 28.546 hybrid contribution -1.024 1.680 -0.732 2.099 sum 2.275 -26.403 3.183 26.691 Atomic orbital electron populations 1.70049 1.06638 1.25599 1.57981 1.25736 0.96639 1.01182 1.02746 0.84931 0.78190 0.78922 0.76779 1.18700 1.22355 1.21157 1.19470 0.90840 0.83170 1.42926 0.89671 1.46156 1.03607 1.00609 1.85830 1.22990 0.96852 0.84116 0.97301 1.23349 0.91504 0.82645 0.99094 1.48515 1.57739 1.19410 1.08389 1.22743 1.03926 0.82521 0.93486 1.22013 0.89296 0.91260 0.93323 0.83520 1.45850 1.11499 1.12560 1.64923 1.16785 0.85750 0.81156 0.76921 1.90837 1.26719 1.72879 1.51256 1.22372 0.91554 0.96243 1.07872 1.23951 0.96593 0.91814 0.97795 1.72218 1.08235 1.38131 1.25623 1.78968 1.16469 0.85440 1.36398 1.72326 1.07938 1.37782 1.23612 1.22812 1.03918 0.92127 1.00732 1.21601 0.78137 0.89088 0.82331 1.90760 1.56781 1.50414 1.47640 1.22590 0.87281 0.90747 0.97222 0.94254 0.91320 0.96136 0.84478 0.86362 0.87124 0.74820 0.75571 0.88590 0.84707 0.96093 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 11.39 21.65 0.25 -60.18 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -13.91 10.70 84.03 0.90 -13.01 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 9 N -0.64 -34.75 3.70 -716.73 -2.65 -37.41 16 10 C 0.11 4.83 8.44 86.49 0.73 5.56 16 11 C 0.14 4.98 4.81 46.76 0.22 5.20 16 12 N -0.61 -16.77 3.16 -799.46 -2.52 -19.30 16 13 C 0.10 1.38 6.97 86.81 0.61 1.98 16 14 C 0.15 2.07 3.48 46.05 0.16 2.23 16 15 H 0.15 1.52 7.63 -2.38 -0.02 1.50 16 16 N -0.70 -10.78 5.14 -440.47 -2.26 -13.04 16 17 C 0.61 10.78 7.82 86.76 0.68 11.46 16 18 O -0.54 -11.47 16.49 -3.92 -0.06 -11.54 16 19 C -0.01 -0.11 6.81 41.98 0.29 0.17 16 20 C 0.09 1.27 11.22 85.22 0.96 2.23 16 21 N -0.60 -8.61 11.41 -92.46 -1.05 -9.67 16 22 S 0.79 8.49 23.69 -56.49 -1.34 7.15 16 23 N -0.56 -8.66 11.00 -80.58 -0.89 -9.55 16 24 C -0.15 -3.24 6.59 30.59 0.20 -3.04 16 25 C 0.50 16.36 7.42 87.90 0.65 17.01 16 26 O -0.58 -26.70 14.61 -3.04 -0.04 -26.74 16 27 C 0.15 7.59 6.90 86.44 0.60 8.18 16 28 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.02 0.97 7.25 -2.39 -0.02 0.95 16 31 H 0.14 4.16 8.14 -2.38 -0.02 4.14 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.15 8.06 -2.38 -0.02 1.13 16 34 H 0.41 6.38 8.21 -92.71 -0.76 5.62 16 35 H 0.23 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 37 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 1.24 5.72 -2.39 -0.01 1.22 16 39 H 0.04 2.34 7.16 -2.39 -0.02 2.32 16 Total: -1.00 -85.86 347.00 -1.74 -87.59 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.36 Total: 9.01 kcal Atomic # 6 Polarization: 27.80 SS G_CDS: 6.46 Total: 34.25 kcal Atomic # 7 Polarization: -140.01 SS G_CDS: -9.14 Total: -149.15 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.11 Total: -38.28 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.34 Total: 7.15 kcal Total: -85.86 -1.74 -87.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094706386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.252 kcal (2) G-P(sol) polarization free energy of solvation -85.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds