Wall clock time and date at job start Tue Mar 31 2020 19:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47203 * 273.93243 * 3 2 1 5 5 H 1.48503 * 109.47035 * 33.92814 * 3 2 1 6 6 H 1.48500 * 109.47443 * 153.93166 * 3 2 1 7 7 C 1.38816 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99918 * 186.18420 * 7 2 1 9 9 N 1.36939 * 119.99847 * 6.46163 * 7 2 1 10 10 C 1.47061 * 136.05714 * 6.65154 * 9 7 2 11 11 C 1.53763 * 87.88663 * 152.96807 * 10 9 7 12 12 N 1.46507 * 114.57167 * 272.66611 * 11 10 9 13 13 C 1.46766 * 124.34734 * 213.66652 * 12 11 10 14 14 C 1.54474 * 105.47182 * 197.01496 * 13 12 11 15 15 H 1.09009 * 110.96848 * 92.70761 * 14 13 12 16 16 N 1.46500 * 110.96866 * 216.43122 * 14 13 12 17 17 C 1.34781 * 119.99660 * 205.00485 * 16 14 13 18 18 O 1.21558 * 120.00484 * 359.97438 * 17 16 14 19 19 C 1.47760 * 119.99814 * 180.02562 * 17 16 14 20 20 C 1.39348 * 124.11527 * 180.02562 * 19 17 16 21 21 N 1.30095 * 112.14309 * 179.97438 * 20 19 17 22 22 S 1.55924 * 108.75498 * 359.97438 * 21 20 19 23 23 N 1.31496 * 124.11534 * 359.69619 * 19 17 16 24 24 C 1.54627 * 101.76804 * 334.59062 * 14 13 12 25 25 C 1.34416 * 124.34878 * 33.37215 * 12 11 10 26 26 O 1.21277 * 124.94569 * 359.57328 * 25 12 11 27 27 C 1.47073 * 136.05230 * 187.02571 * 9 7 2 28 28 H 0.97001 * 120.00470 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.47071 * 267.69468 * 10 9 7 30 30 H 1.08996 * 113.46777 * 38.14312 * 10 9 7 31 31 H 1.08991 * 114.08795 * 139.78129 * 11 10 9 32 32 H 1.08994 * 110.25034 * 316.02337 * 13 12 11 33 33 H 1.09008 * 110.24153 * 78.01966 * 13 12 11 34 34 H 0.96999 * 120.00665 * 25.00214 * 16 14 13 35 35 H 1.08000 * 123.92881 * 359.93519 * 20 19 17 36 36 H 1.08993 * 110.48735 * 143.47900 * 24 14 13 37 37 H 1.09010 * 110.48437 * 265.98131 * 24 14 13 38 38 H 1.08993 * 113.46909 * 321.86668 * 27 9 7 39 39 H 1.09002 * 113.46296 * 92.30576 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4146 2.0944 -1.3968 5 1 1.4916 2.6272 0.7815 6 1 3.5868 1.4176 0.6152 7 6 2.0102 -1.2022 -0.0005 8 1 3.0855 -1.2050 0.1002 9 7 1.3320 -2.3843 -0.1345 10 6 -0.0560 -2.7831 -0.4124 11 6 0.4985 -4.0864 -1.0110 12 7 0.8485 -4.0039 -2.4313 13 6 0.7129 -5.1126 -3.3833 14 6 1.5824 -4.7209 -4.5986 15 1 2.5904 -5.1249 -4.5035 16 7 0.9609 -5.1589 -5.8508 17 6 1.7235 -5.3825 -6.9394 18 8 2.9269 -5.2202 -6.8824 19 6 1.0966 -5.8237 -8.2026 20 6 1.8014 -6.0797 -9.3771 21 7 1.0192 -6.4550 -10.3465 22 16 -0.4497 -6.4808 -9.8240 23 7 -0.1934 -6.0287 -8.3535 24 6 1.5926 -3.1781 -4.4949 25 6 1.3298 -2.9014 -3.0310 26 8 1.5271 -1.8400 -2.4784 27 6 1.6699 -3.8136 -0.0573 28 1 -0.4851 0.8400 0.0004 29 1 -0.6516 -2.9378 0.4873 30 1 -0.5529 -2.1451 -1.1431 31 1 -0.0837 -4.9734 -0.7616 32 1 1.0799 -6.0380 -2.9395 33 1 -0.3284 -5.2253 -3.6852 34 1 0.0007 -5.2881 -5.8965 35 1 2.8724 -5.9777 -9.4719 36 1 2.5634 -2.7822 -4.7926 37 1 0.8017 -2.7492 -5.1104 38 1 2.6431 -4.0533 -0.4854 39 1 1.5291 -4.2398 0.9360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094706387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:51 Heat of formation + Delta-G solvation = 92.900598 kcal Electronic energy + Delta-G solvation = -26652.433875 eV Core-core repulsion = 22726.076567 eV Total energy + Delta-G solvation = -3926.357307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56507 -40.35762 -39.17992 -37.22905 -35.97259 -34.42585 -33.62493 -31.91001 -30.14508 -28.00846 -27.40263 -26.81802 -24.50665 -23.88919 -23.26075 -21.54658 -20.87748 -20.36327 -19.83794 -18.22959 -17.76431 -16.76129 -16.65667 -16.46901 -15.86349 -15.71235 -15.31423 -14.76174 -14.69952 -14.48688 -13.82202 -13.64344 -13.42021 -13.26441 -12.94208 -12.70637 -12.39064 -12.26756 -11.92632 -11.83537 -11.65138 -11.50470 -11.30579 -11.18913 -10.95360 -10.63856 -10.52821 -10.50574 -9.97658 -9.79185 -9.71262 -9.50463 -9.23233 -8.74877 -8.37326 -7.88603 -6.55884 -5.49035 -2.74627 -0.05055 0.90854 1.09768 1.15145 2.59904 2.71383 3.45207 3.52660 3.57511 3.61663 3.62826 4.00234 4.30561 4.45449 4.63583 4.65970 4.71112 4.93832 5.03284 5.11917 5.34600 5.44012 5.48734 5.67134 5.73727 5.78501 5.89962 5.95387 6.02306 6.17051 6.36241 6.52850 6.61273 6.93404 7.06713 7.30784 7.52959 7.70671 7.75944 7.87966 8.22926 9.12622 9.29719 10.01691 10.90149 11.71850 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002511 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.956238 B =11148.641778 C =11579.052231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.176 4.176 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.159 3.841 11 C 0.095 3.905 12 N -0.603 5.603 13 C 0.108 3.892 14 C 0.134 3.866 15 H 0.115 0.885 16 N -0.697 5.697 17 C 0.608 3.392 18 O -0.516 6.516 19 C 0.012 3.988 20 C 0.091 3.909 21 N -0.578 5.578 22 S 0.724 5.276 23 N -0.547 5.547 24 C -0.168 4.168 25 C 0.491 3.509 26 O -0.422 6.422 27 C 0.101 3.899 28 H 0.246 0.754 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.216 0.784 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -18.899 -19.322 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.304 4.304 8 H 0.088 0.912 9 N -0.311 5.311 10 C 0.032 3.968 11 C -0.009 4.009 12 N -0.342 5.342 13 C -0.016 4.016 14 C 0.029 3.971 15 H 0.133 0.867 16 N -0.349 5.349 17 C 0.388 3.612 18 O -0.391 6.391 19 C -0.163 4.163 20 C -0.102 4.102 21 N -0.419 5.419 22 S 0.765 5.235 23 N -0.397 5.397 24 C -0.210 4.210 25 C 0.274 3.726 26 O -0.287 6.287 27 C -0.027 4.027 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.232 0.768 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.960 -18.269 -19.857 27.272 hybrid contribution 1.436 1.169 0.712 1.984 sum -2.524 -17.100 -19.145 25.794 Atomic orbital electron populations 1.69807 1.04932 1.24450 1.58105 1.24540 0.95369 0.96843 1.02848 0.86227 0.78487 0.84421 0.77310 1.21925 1.22257 1.21056 1.18552 0.89570 0.81485 1.40762 0.91185 1.45275 1.05052 0.98815 1.81929 1.22251 0.89525 0.88877 0.96183 1.22764 0.98828 1.00227 0.79097 1.47727 1.66937 1.11728 1.07759 1.22013 0.99173 0.91414 0.89050 1.21909 0.98476 0.94732 0.82024 0.86704 1.45738 1.11592 1.67587 1.10012 1.16699 0.85872 0.77369 0.81276 1.90871 1.13306 1.51550 1.83336 1.22505 0.87528 1.07458 0.98835 1.23811 1.03474 0.97071 0.85840 1.72283 1.09787 1.23878 1.35964 1.79140 1.09050 1.43144 0.92130 1.72435 1.21022 1.20057 1.26209 1.22860 1.05099 0.95507 0.97510 1.20604 0.79221 0.85097 0.87719 1.91189 1.46146 1.23790 1.67561 1.22871 0.96127 0.88192 0.95551 0.94381 0.94706 0.91735 0.89562 0.90139 0.91462 0.75230 0.76789 0.88155 0.88412 0.94503 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.08 11.83 55.49 0.66 -28.42 16 2 C 0.00 -0.02 5.40 -17.43 -0.09 -0.12 16 3 Si 0.90 24.13 29.56 -169.99 -5.02 19.11 16 4 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.18 -5.24 8.74 -15.06 -0.13 -5.38 16 8 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.51 2.27 -184.58 -0.42 -15.92 16 10 C 0.16 3.78 6.24 -8.36 -0.05 3.73 16 11 C 0.10 1.71 5.12 -67.67 -0.35 1.36 16 12 N -0.60 -9.91 3.18 -164.47 -0.52 -10.44 16 13 C 0.11 1.17 7.08 -3.12 -0.02 1.15 16 14 C 0.13 1.46 3.53 -66.30 -0.23 1.23 16 15 H 0.12 1.32 7.54 -51.92 -0.39 0.92 16 16 N -0.70 -6.41 5.15 -53.19 -0.27 -6.68 16 17 C 0.61 6.28 7.82 -12.37 -0.10 6.19 16 18 O -0.52 -6.75 16.44 5.31 0.09 -6.66 16 19 C 0.01 0.10 6.81 -83.71 -0.57 -0.47 16 20 C 0.09 0.72 11.22 -17.87 -0.20 0.52 16 21 N -0.58 -4.52 11.41 19.43 0.22 -4.30 16 22 S 0.72 4.12 23.69 -107.50 -2.55 1.57 16 23 N -0.55 -4.26 11.00 23.18 0.26 -4.00 16 24 C -0.17 -2.40 6.59 -26.74 -0.18 -2.58 16 25 C 0.49 9.58 7.58 -10.86 -0.08 9.50 16 26 O -0.42 -10.96 12.73 5.56 0.07 -10.89 16 27 C 0.10 2.08 8.34 -8.49 -0.07 2.01 16 28 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.76 7.09 -51.93 -0.37 1.39 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.61 7.80 -51.92 -0.40 0.20 16 34 H 0.41 3.13 8.01 -40.82 -0.33 2.80 16 35 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.32 8.08 -51.92 -0.42 0.90 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -38.15 344.64 -8.80 -46.94 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.42 Total: -2.65 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: -2.08 Total: 17.15 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -0.08 Total: -69.77 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.16 Total: -17.55 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.11 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.55 Total: 1.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.15 -8.80 -46.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094706387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.844 kcal (2) G-P(sol) polarization free energy of solvation -38.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds