Wall clock time and date at job start Tue Mar 31 2020 19:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47203 * 273.93243 * 3 2 1 5 5 H 1.48503 * 109.47035 * 33.92814 * 3 2 1 6 6 H 1.48500 * 109.47443 * 153.93166 * 3 2 1 7 7 C 1.38816 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99918 * 186.18420 * 7 2 1 9 9 N 1.36939 * 119.99847 * 6.46163 * 7 2 1 10 10 C 1.47061 * 136.05714 * 6.65154 * 9 7 2 11 11 C 1.53763 * 87.88663 * 152.96807 * 10 9 7 12 12 N 1.46507 * 114.57167 * 272.66611 * 11 10 9 13 13 C 1.46766 * 124.34734 * 213.66652 * 12 11 10 14 14 C 1.54474 * 105.47182 * 197.01496 * 13 12 11 15 15 H 1.09009 * 110.96848 * 92.70761 * 14 13 12 16 16 N 1.46500 * 110.96866 * 216.43122 * 14 13 12 17 17 C 1.34781 * 119.99660 * 205.00485 * 16 14 13 18 18 O 1.21558 * 120.00484 * 359.97438 * 17 16 14 19 19 C 1.47760 * 119.99814 * 180.02562 * 17 16 14 20 20 C 1.39348 * 124.11527 * 180.02562 * 19 17 16 21 21 N 1.30095 * 112.14309 * 179.97438 * 20 19 17 22 22 S 1.55924 * 108.75498 * 359.97438 * 21 20 19 23 23 N 1.31496 * 124.11534 * 359.69619 * 19 17 16 24 24 C 1.54627 * 101.76804 * 334.59062 * 14 13 12 25 25 C 1.34416 * 124.34878 * 33.37215 * 12 11 10 26 26 O 1.21277 * 124.94569 * 359.57328 * 25 12 11 27 27 C 1.47073 * 136.05230 * 187.02571 * 9 7 2 28 28 H 0.97001 * 120.00470 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.47071 * 267.69468 * 10 9 7 30 30 H 1.08996 * 113.46777 * 38.14312 * 10 9 7 31 31 H 1.08991 * 114.08795 * 139.78129 * 11 10 9 32 32 H 1.08994 * 110.25034 * 316.02337 * 13 12 11 33 33 H 1.09008 * 110.24153 * 78.01966 * 13 12 11 34 34 H 0.96999 * 120.00665 * 25.00214 * 16 14 13 35 35 H 1.08000 * 123.92881 * 359.93519 * 20 19 17 36 36 H 1.08993 * 110.48735 * 143.47900 * 24 14 13 37 37 H 1.09010 * 110.48437 * 265.98131 * 24 14 13 38 38 H 1.08993 * 113.46909 * 321.86668 * 27 9 7 39 39 H 1.09002 * 113.46296 * 92.30576 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4146 2.0944 -1.3968 5 1 1.4916 2.6272 0.7815 6 1 3.5868 1.4176 0.6152 7 6 2.0102 -1.2022 -0.0005 8 1 3.0855 -1.2050 0.1002 9 7 1.3320 -2.3843 -0.1345 10 6 -0.0560 -2.7831 -0.4124 11 6 0.4985 -4.0864 -1.0110 12 7 0.8485 -4.0039 -2.4313 13 6 0.7129 -5.1126 -3.3833 14 6 1.5824 -4.7209 -4.5986 15 1 2.5904 -5.1249 -4.5035 16 7 0.9609 -5.1589 -5.8508 17 6 1.7235 -5.3825 -6.9394 18 8 2.9269 -5.2202 -6.8824 19 6 1.0966 -5.8237 -8.2026 20 6 1.8014 -6.0797 -9.3771 21 7 1.0192 -6.4550 -10.3465 22 16 -0.4497 -6.4808 -9.8240 23 7 -0.1934 -6.0287 -8.3535 24 6 1.5926 -3.1781 -4.4949 25 6 1.3298 -2.9014 -3.0310 26 8 1.5271 -1.8400 -2.4784 27 6 1.6699 -3.8136 -0.0573 28 1 -0.4851 0.8400 0.0004 29 1 -0.6516 -2.9378 0.4873 30 1 -0.5529 -2.1451 -1.1431 31 1 -0.0837 -4.9734 -0.7616 32 1 1.0799 -6.0380 -2.9395 33 1 -0.3284 -5.2253 -3.6852 34 1 0.0007 -5.2881 -5.8965 35 1 2.8724 -5.9777 -9.4719 36 1 2.5634 -2.7822 -4.7926 37 1 0.8017 -2.7492 -5.1104 38 1 2.6431 -4.0533 -0.4854 39 1 1.5291 -4.2398 0.9360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094706387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:50 Heat of formation + Delta-G solvation = 62.223696 kcal Electronic energy + Delta-G solvation = -26653.764125 eV Core-core repulsion = 22726.076567 eV Total energy + Delta-G solvation = -3927.687558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22925 -41.60871 -40.15762 -38.78540 -37.35515 -35.35487 -34.53226 -33.90562 -31.44856 -29.25175 -28.79982 -27.88964 -26.28873 -25.28458 -24.47364 -22.45050 -22.14856 -21.56510 -20.37590 -19.35469 -18.91621 -18.65251 -17.70128 -17.20838 -17.09607 -16.85956 -16.48196 -16.39155 -15.81038 -15.62896 -15.48577 -15.16506 -14.78909 -14.52059 -14.28390 -14.05104 -13.77146 -13.28432 -13.23987 -12.89268 -12.82745 -12.79007 -12.50743 -12.47507 -12.24830 -12.18414 -12.07122 -11.90541 -11.70779 -11.31693 -11.20587 -10.79762 -10.56435 -10.22364 -9.98041 -9.34221 -8.64322 -7.75917 -4.98590 -0.63292 0.36962 0.46456 0.65202 1.38650 1.44759 1.49033 1.78797 1.93594 2.00847 2.27899 2.56283 3.33958 3.45328 3.51321 3.53108 3.63705 3.71103 3.82363 4.02683 4.03392 4.06061 4.50122 4.51796 4.62222 4.62887 4.70192 4.78965 4.86348 4.90592 4.96937 5.24737 5.28108 5.29799 5.37682 5.58818 6.02823 6.12417 6.33784 6.49093 6.96050 7.06056 7.66689 7.80248 8.78046 9.45178 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002511 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.956238 B =11148.641778 C =11579.052231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.061 4.061 3 Si 0.957 3.043 4 H -0.302 1.302 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.169 4.169 8 H 0.060 0.940 9 N -0.618 5.618 10 C 0.153 3.847 11 C 0.129 3.871 12 N -0.603 5.603 13 C 0.110 3.890 14 C 0.151 3.849 15 H 0.115 0.885 16 N -0.686 5.686 17 C 0.611 3.389 18 O -0.548 6.548 19 C -0.005 4.005 20 C 0.088 3.912 21 N -0.603 5.603 22 S 0.798 5.202 23 N -0.559 5.559 24 C -0.158 4.158 25 C 0.478 3.522 26 O -0.502 6.502 27 C 0.099 3.901 28 H 0.237 0.763 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.147 0.853 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.422 0.578 35 H 0.223 0.777 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -22.203 -20.696 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.253 4.253 3 Si 0.788 3.212 4 H -0.231 1.231 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.298 4.298 8 H 0.078 0.922 9 N -0.343 5.343 10 C 0.026 3.974 11 C 0.025 3.975 12 N -0.339 5.339 13 C -0.012 4.012 14 C 0.045 3.955 15 H 0.132 0.868 16 N -0.338 5.338 17 C 0.392 3.608 18 O -0.425 6.425 19 C -0.177 4.177 20 C -0.103 4.103 21 N -0.445 5.445 22 S 0.839 5.161 23 N -0.411 5.411 24 C -0.200 4.200 25 C 0.263 3.737 26 O -0.373 6.373 27 C -0.027 4.027 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.164 0.836 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.261 0.739 35 H 0.239 0.761 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.637 -21.674 -21.246 30.703 hybrid contribution 1.575 2.045 0.992 2.765 sum -3.062 -19.630 -20.255 28.372 Atomic orbital electron populations 1.69969 1.06042 1.24141 1.60472 1.25176 0.96172 0.99596 1.04324 0.85359 0.78074 0.81217 0.76544 1.23063 1.22089 1.19617 1.18707 0.89415 0.83391 1.38253 0.92240 1.45541 1.06545 1.00194 1.82040 1.22246 0.88298 0.91382 0.95450 1.22482 0.96643 0.98992 0.79407 1.47874 1.65337 1.12727 1.07958 1.22360 1.01089 0.90322 0.87473 1.21655 0.98965 0.91796 0.83074 0.86753 1.45554 1.12029 1.67023 1.09167 1.16875 0.85486 0.76619 0.81815 1.90859 1.14729 1.52962 1.83953 1.22175 0.87906 1.09269 0.98395 1.23889 1.04003 0.96848 0.85599 1.72191 1.11102 1.24625 1.36554 1.78886 1.07128 1.40069 0.90018 1.72271 1.20688 1.20283 1.27899 1.22737 1.04733 0.98536 0.93979 1.21433 0.78009 0.84629 0.89600 1.91143 1.49512 1.26851 1.69785 1.23101 0.97279 0.84880 0.97441 0.95410 0.95242 0.96227 0.83555 0.86635 0.88426 0.73941 0.76085 0.89157 0.87665 0.94565 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.75 11.83 21.65 0.26 -62.49 16 2 C -0.06 -3.85 5.40 84.86 0.46 -3.39 16 3 Si 0.96 51.56 29.56 68.60 2.03 53.58 16 4 H -0.30 -16.61 7.11 99.48 0.71 -15.90 16 5 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.17 -10.36 8.74 84.03 0.73 -9.63 16 8 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 9 N -0.62 -33.22 2.27 -737.88 -1.68 -34.89 16 10 C 0.15 7.35 6.24 83.28 0.52 7.87 16 11 C 0.13 4.29 5.12 45.55 0.23 4.52 16 12 N -0.60 -18.35 3.18 -792.84 -2.52 -20.87 16 13 C 0.11 1.88 7.08 86.83 0.61 2.49 16 14 C 0.15 2.89 3.53 46.05 0.16 3.05 16 15 H 0.11 2.32 7.54 -2.38 -0.02 2.30 16 16 N -0.69 -10.64 5.15 -440.48 -2.27 -12.91 16 17 C 0.61 11.49 7.82 86.76 0.68 12.16 16 18 O -0.55 -13.73 16.44 -3.90 -0.06 -13.80 16 19 C 0.00 -0.07 6.81 41.98 0.29 0.22 16 20 C 0.09 1.25 11.22 85.22 0.96 2.21 16 21 N -0.60 -8.16 11.41 -92.44 -1.05 -9.21 16 22 S 0.80 6.85 23.69 -56.49 -1.34 5.51 16 23 N -0.56 -7.18 11.00 -80.58 -0.89 -8.07 16 24 C -0.16 -4.42 6.59 30.59 0.20 -4.22 16 25 C 0.48 18.70 7.58 87.90 0.67 19.37 16 26 O -0.50 -27.23 12.73 -3.02 -0.04 -27.26 16 27 C 0.10 3.95 8.34 83.19 0.69 4.64 16 28 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.02 1.10 7.09 -2.39 -0.02 1.08 16 31 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.20 7.80 -2.38 -0.02 1.18 16 34 H 0.42 4.90 8.01 -92.71 -0.74 4.16 16 35 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.11 2.77 8.08 -2.38 -0.02 2.75 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -89.54 344.64 -0.99 -90.52 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 0.37 Total: 0.60 kcal Atomic # 6 Polarization: 33.10 SS G_CDS: 6.21 Total: 39.30 kcal Atomic # 7 Polarization: -140.30 SS G_CDS: -8.15 Total: -148.45 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.10 Total: -41.06 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.03 Total: 53.58 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.34 Total: 5.51 kcal Total: -89.54 -0.99 -90.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094706387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.747 kcal (2) G-P(sol) polarization free energy of solvation -89.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds