Wall clock time and date at job start Tue Mar 31 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00141 * 2 1 4 4 H 1.48508 * 109.46852 * 273.99482 * 3 2 1 5 5 H 1.48494 * 109.47029 * 33.98993 * 3 2 1 6 6 H 1.48497 * 109.47536 * 153.99687 * 3 2 1 7 7 C 1.38816 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99894 * 173.35927 * 7 2 1 9 9 N 1.36939 * 120.00090 * 353.36077 * 7 2 1 10 10 C 1.47576 * 134.49375 * 172.75633 * 9 7 2 11 11 C 1.53946 * 86.11697 * 155.36353 * 10 9 7 12 12 N 1.46495 * 113.73985 * 269.15566 * 11 10 9 13 13 C 1.46765 * 124.35022 * 238.07473 * 12 11 10 14 14 C 1.54479 * 105.47605 * 197.01789 * 13 12 11 15 15 H 1.09001 * 110.97504 * 216.42635 * 14 13 12 16 16 N 1.46505 * 110.97018 * 92.70056 * 14 13 12 17 17 C 1.34777 * 119.99929 * 155.00238 * 16 14 13 18 18 O 1.21623 * 120.00254 * 0.02562 * 17 16 14 19 19 C 1.47177 * 119.99906 * 179.97438 * 17 16 14 20 20 C 1.38241 * 128.47683 * 179.69990 * 19 17 16 21 21 N 1.31236 * 111.88834 * 179.85449 * 20 19 17 22 22 N 1.27334 * 120.04199 * 0.48614 * 21 20 19 23 23 S 1.56645 * 109.73757 * 359.71859 * 22 21 20 24 24 C 1.54632 * 101.76583 * 334.58544 * 14 13 12 25 25 C 1.34420 * 124.35034 * 57.77805 * 12 11 10 26 26 O 1.21278 * 124.94554 * 359.56868 * 25 12 11 27 27 C 1.47579 * 134.49343 * 352.76457 * 9 7 2 28 28 H 0.96997 * 120.00371 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.76801 * 41.06424 * 10 9 7 30 30 H 1.08994 * 113.77454 * 269.66513 * 10 9 7 31 31 H 1.08995 * 113.74273 * 137.95392 * 11 10 9 32 32 H 1.09000 * 110.24406 * 316.01663 * 13 12 11 33 33 H 1.08997 * 110.25034 * 78.02151 * 13 12 11 34 34 H 0.97006 * 120.00010 * 334.99925 * 16 14 13 35 35 H 1.08000 * 124.05465 * 359.97438 * 20 19 17 36 36 H 1.09001 * 110.49090 * 143.47499 * 24 14 13 37 37 H 1.08999 * 110.48314 * 265.98982 * 24 14 13 38 38 H 1.09001 * 113.77138 * 90.33157 * 27 9 7 39 39 H 1.09002 * 113.76670 * 318.94079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4132 2.0951 -1.3968 5 1 1.4924 2.6268 0.7827 6 1 3.5874 1.4173 0.6138 7 6 2.0102 -1.2022 0.0005 8 1 3.0849 -1.2053 -0.1076 9 7 1.3325 -2.3841 0.1382 10 6 1.7086 -3.8084 0.0502 11 6 0.4970 -4.0767 0.9611 12 7 0.8183 -4.0592 2.3903 13 6 0.5862 -5.1831 3.3051 14 6 0.6548 -4.5795 4.7254 15 1 1.1220 -5.2749 5.4228 16 7 -0.6769 -4.1873 5.1934 17 6 -0.9346 -4.1218 6.5147 18 8 -0.0615 -4.3877 7.3186 19 6 -2.2723 -3.7272 6.9849 20 6 -2.7267 -3.6088 8.2851 21 7 -3.9823 -3.2298 8.3319 22 7 -4.6281 -3.0286 7.2530 23 16 -3.6972 -3.2951 6.0217 24 6 1.5490 -3.3386 4.4978 25 6 1.3689 -3.0137 3.0312 26 8 1.6745 -1.9620 2.5101 27 6 -0.0676 -2.7451 0.4340 28 1 -0.4850 0.8400 -0.0004 29 1 2.6673 -4.0391 0.5148 30 1 1.6075 -4.2285 -0.9505 31 1 -0.0882 -4.9482 0.6678 32 1 -0.3976 -5.6173 3.1270 33 1 1.3614 -5.9388 3.1787 34 1 -1.3732 -3.9747 4.5523 35 1 -2.1206 -3.8028 9.1576 36 1 1.2143 -2.5080 5.1193 37 1 2.5917 -3.5759 4.7088 38 1 -0.6906 -2.8528 -0.4540 39 1 -0.5272 -2.1267 1.2051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094712369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:56 Heat of formation + Delta-G solvation = 101.495081 kcal Electronic energy + Delta-G solvation = -26989.526094 eV Core-core repulsion = 23063.541471 eV Total energy + Delta-G solvation = -3925.984623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.21838 -40.63195 -39.42974 -37.19388 -36.04698 -33.99619 -32.54319 -31.91044 -30.24998 -28.02621 -27.44094 -26.89844 -24.78894 -23.81257 -23.28869 -21.49231 -21.07587 -20.38632 -19.65113 -17.93259 -17.78324 -17.07640 -16.65791 -16.24551 -15.96517 -15.58023 -15.15891 -14.84359 -14.79906 -14.46360 -14.08962 -13.79722 -13.46805 -13.36868 -13.07147 -12.77366 -12.52078 -12.33676 -12.09851 -11.79130 -11.71836 -11.20261 -11.18223 -10.72948 -10.69077 -10.51299 -10.48164 -10.47309 -10.22686 -10.17852 -9.75668 -9.62108 -9.38073 -8.82919 -8.44621 -8.02786 -6.61105 -5.54538 -2.79645 -0.64995 0.43196 1.10895 1.59693 2.49639 2.58731 3.35415 3.39432 3.52269 3.57766 3.60376 3.64256 4.20159 4.30336 4.38352 4.51961 4.65718 4.81988 5.06573 5.19074 5.22944 5.37893 5.42673 5.53231 5.63513 5.67235 5.86410 5.91194 6.06221 6.29568 6.49108 6.55284 6.85642 6.92000 7.23182 7.26126 7.47150 7.60892 7.69795 7.78012 8.18431 9.02020 9.25867 9.96653 10.80334 11.65941 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003381 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.668600 B = 8279.217021 C = 9031.611357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.004 4.004 3 Si 0.902 3.098 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.178 4.178 8 H 0.069 0.931 9 N -0.586 5.586 10 C 0.103 3.897 11 C 0.102 3.898 12 N -0.610 5.610 13 C 0.103 3.897 14 C 0.135 3.865 15 H 0.119 0.881 16 N -0.709 5.709 17 C 0.607 3.393 18 O -0.514 6.514 19 C -0.292 4.292 20 C 0.076 3.924 21 N -0.254 5.254 22 N -0.255 5.255 23 S 0.437 5.563 24 C -0.169 4.169 25 C 0.489 3.511 26 O -0.428 6.428 27 C 0.165 3.835 28 H 0.247 0.753 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.404 0.596 35 H 0.216 0.784 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 -15.413 12.465 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.306 4.306 8 H 0.087 0.913 9 N -0.312 5.312 10 C -0.025 4.025 11 C -0.002 4.002 12 N -0.348 5.348 13 C -0.022 4.022 14 C 0.030 3.970 15 H 0.137 0.863 16 N -0.361 5.361 17 C 0.390 3.610 18 O -0.390 6.390 19 C -0.433 4.433 20 C -0.091 4.091 21 N -0.118 5.118 22 N -0.237 5.237 23 S 0.572 5.428 24 C -0.211 4.211 25 C 0.272 3.728 26 O -0.294 6.294 27 C 0.039 3.961 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.240 0.760 35 H 0.233 0.767 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.055 0.945 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.528 -14.078 12.039 19.641 hybrid contribution 1.330 0.652 0.429 1.542 sum -5.198 -13.426 12.469 19.046 Atomic orbital electron populations 1.69785 1.04897 1.24508 1.58576 1.24525 0.95377 0.96850 1.03127 0.86237 0.78883 0.84489 0.76943 1.22282 1.22039 1.20929 1.18651 0.89787 0.81998 1.40195 0.91323 1.45606 1.05004 0.98846 1.81731 1.22989 0.95930 0.87912 0.95653 1.22973 0.98378 1.00071 0.78819 1.47879 1.64543 1.14517 1.07834 1.22192 1.02433 0.90203 0.87354 1.21950 0.82253 0.97013 0.95807 0.86293 1.45887 1.14648 1.69424 1.06148 1.16421 0.84415 0.77403 0.82710 1.90863 1.45365 1.48712 1.54091 1.28047 1.02079 1.15054 0.98167 1.24483 0.90567 0.96291 0.97770 1.70718 1.07344 1.14785 1.18923 1.78879 1.26124 1.19931 0.98755 1.82846 0.96013 1.44606 1.19293 1.22868 1.01807 0.99158 0.97262 1.20690 0.79264 0.84821 0.87975 1.91161 1.44913 1.22988 1.70373 1.22379 0.88921 0.88229 0.96598 0.94349 0.94203 0.94399 0.90023 0.90241 0.89967 0.76036 0.76733 0.88427 0.87469 0.94517 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 11.74 55.49 0.65 -27.69 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.90 23.69 29.56 -169.99 -5.02 18.66 16 4 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.18 -5.17 8.81 -15.06 -0.13 -5.30 16 8 H 0.07 2.00 7.84 -52.48 -0.41 1.59 16 9 N -0.59 -14.86 2.16 -178.11 -0.39 -15.24 16 10 C 0.10 2.02 8.50 -2.98 -0.03 2.00 16 11 C 0.10 1.68 4.93 -70.15 -0.35 1.34 16 12 N -0.61 -8.90 3.16 -166.65 -0.53 -9.43 16 13 C 0.10 0.92 6.97 -3.12 -0.02 0.90 16 14 C 0.13 1.25 3.53 -66.29 -0.23 1.01 16 15 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 16 N -0.71 -6.38 5.12 -53.37 -0.27 -6.65 16 17 C 0.61 6.13 7.80 -12.63 -0.10 6.03 16 18 O -0.51 -6.52 16.62 5.26 0.09 -6.43 16 19 C -0.29 -2.63 6.81 -35.95 -0.25 -2.88 16 20 C 0.08 0.68 11.55 -17.80 -0.21 0.48 16 21 N -0.25 -2.75 11.54 30.36 0.35 -2.39 16 22 N -0.26 -2.76 12.51 60.35 0.75 -2.00 16 23 S 0.44 3.58 23.05 -107.50 -2.48 1.10 16 24 C -0.17 -2.16 6.58 -26.73 -0.18 -2.33 16 25 C 0.49 8.72 7.50 -10.85 -0.08 8.64 16 26 O -0.43 -10.53 13.17 5.56 0.07 -10.46 16 27 C 0.17 3.71 6.36 -2.98 -0.02 3.69 16 28 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 3.23 8.09 -40.82 -0.33 2.90 16 35 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -37.79 346.95 -7.67 -45.46 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -4.45 Total: -3.51 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.68 Total: 13.36 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.57 Total: -63.41 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.16 Total: -16.88 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.02 Total: 18.66 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.48 Total: 1.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.79 -7.67 -45.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094712369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.954 kcal (2) G-P(sol) polarization free energy of solvation -37.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds