Wall clock time and date at job start Tue Mar 31 2020 19:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00141 * 2 1 4 4 H 1.48508 * 109.46852 * 273.99482 * 3 2 1 5 5 H 1.48494 * 109.47029 * 33.98993 * 3 2 1 6 6 H 1.48497 * 109.47536 * 153.99687 * 3 2 1 7 7 C 1.38816 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99894 * 173.35927 * 7 2 1 9 9 N 1.36939 * 120.00090 * 353.36077 * 7 2 1 10 10 C 1.47576 * 134.49375 * 172.75633 * 9 7 2 11 11 C 1.53946 * 86.11697 * 155.36353 * 10 9 7 12 12 N 1.46495 * 113.73985 * 269.15566 * 11 10 9 13 13 C 1.46765 * 124.35022 * 238.07473 * 12 11 10 14 14 C 1.54479 * 105.47605 * 197.01789 * 13 12 11 15 15 H 1.09001 * 110.97504 * 216.42635 * 14 13 12 16 16 N 1.46505 * 110.97018 * 92.70056 * 14 13 12 17 17 C 1.34777 * 119.99929 * 155.00238 * 16 14 13 18 18 O 1.21623 * 120.00254 * 0.02562 * 17 16 14 19 19 C 1.47177 * 119.99906 * 179.97438 * 17 16 14 20 20 C 1.38241 * 128.47683 * 179.69990 * 19 17 16 21 21 N 1.31236 * 111.88834 * 179.85449 * 20 19 17 22 22 N 1.27334 * 120.04199 * 0.48614 * 21 20 19 23 23 S 1.56645 * 109.73757 * 359.71859 * 22 21 20 24 24 C 1.54632 * 101.76583 * 334.58544 * 14 13 12 25 25 C 1.34420 * 124.35034 * 57.77805 * 12 11 10 26 26 O 1.21278 * 124.94554 * 359.56868 * 25 12 11 27 27 C 1.47579 * 134.49343 * 352.76457 * 9 7 2 28 28 H 0.96997 * 120.00371 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.76801 * 41.06424 * 10 9 7 30 30 H 1.08994 * 113.77454 * 269.66513 * 10 9 7 31 31 H 1.08995 * 113.74273 * 137.95392 * 11 10 9 32 32 H 1.09000 * 110.24406 * 316.01663 * 13 12 11 33 33 H 1.08997 * 110.25034 * 78.02151 * 13 12 11 34 34 H 0.97006 * 120.00010 * 334.99925 * 16 14 13 35 35 H 1.08000 * 124.05465 * 359.97438 * 20 19 17 36 36 H 1.09001 * 110.49090 * 143.47499 * 24 14 13 37 37 H 1.08999 * 110.48314 * 265.98982 * 24 14 13 38 38 H 1.09001 * 113.77138 * 90.33157 * 27 9 7 39 39 H 1.09002 * 113.76670 * 318.94079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4132 2.0951 -1.3968 5 1 1.4924 2.6268 0.7827 6 1 3.5874 1.4173 0.6138 7 6 2.0102 -1.2022 0.0005 8 1 3.0849 -1.2053 -0.1076 9 7 1.3325 -2.3841 0.1382 10 6 1.7086 -3.8084 0.0502 11 6 0.4970 -4.0767 0.9611 12 7 0.8183 -4.0592 2.3903 13 6 0.5862 -5.1831 3.3051 14 6 0.6548 -4.5795 4.7254 15 1 1.1220 -5.2749 5.4228 16 7 -0.6769 -4.1873 5.1934 17 6 -0.9346 -4.1218 6.5147 18 8 -0.0615 -4.3877 7.3186 19 6 -2.2723 -3.7272 6.9849 20 6 -2.7267 -3.6088 8.2851 21 7 -3.9823 -3.2298 8.3319 22 7 -4.6281 -3.0286 7.2530 23 16 -3.6972 -3.2951 6.0217 24 6 1.5490 -3.3386 4.4978 25 6 1.3689 -3.0137 3.0312 26 8 1.6745 -1.9620 2.5101 27 6 -0.0676 -2.7451 0.4340 28 1 -0.4850 0.8400 -0.0004 29 1 2.6673 -4.0391 0.5148 30 1 1.6075 -4.2285 -0.9505 31 1 -0.0882 -4.9482 0.6678 32 1 -0.3976 -5.6173 3.1270 33 1 1.3614 -5.9388 3.1787 34 1 -1.3732 -3.9747 4.5523 35 1 -2.1206 -3.8028 9.1576 36 1 1.2143 -2.5080 5.1193 37 1 2.5917 -3.5759 4.7088 38 1 -0.6906 -2.8528 -0.4540 39 1 -0.5272 -2.1267 1.2051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094712369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:55 Heat of formation + Delta-G solvation = 71.852928 kcal Electronic energy + Delta-G solvation = -26990.811474 eV Core-core repulsion = 23063.541471 eV Total energy + Delta-G solvation = -3927.270003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.99797 -41.68444 -40.46562 -38.67341 -37.33902 -35.08301 -33.99364 -33.20263 -31.45055 -29.18606 -28.84490 -27.94816 -26.47607 -25.17412 -24.48580 -22.33042 -22.12704 -21.70986 -20.36581 -19.23237 -18.67810 -18.63482 -17.91493 -17.21345 -17.00087 -16.80208 -16.46589 -16.11044 -15.77442 -15.71658 -15.45883 -15.18549 -15.01216 -14.53562 -14.15431 -13.93374 -13.82599 -13.36254 -13.25184 -13.07346 -12.95016 -12.79133 -12.64263 -12.53111 -12.41459 -11.97032 -11.56660 -11.52827 -11.36174 -11.23654 -11.19604 -10.94480 -10.75013 -10.54156 -10.04081 -9.33765 -8.62135 -7.75674 -4.96970 -1.37587 -0.24938 0.40012 0.86673 1.39357 1.42343 1.49731 1.73305 1.82391 2.03350 2.23502 2.56767 2.95198 3.42143 3.44664 3.52852 3.58539 3.63918 3.65921 3.91855 3.95396 4.26446 4.50942 4.57985 4.67364 4.69855 4.73693 4.82440 4.88413 4.95141 4.99969 5.27046 5.30738 5.32666 5.62259 6.06018 6.14143 6.18596 6.53331 6.54799 6.84832 7.09476 7.70591 7.81678 8.74634 9.44488 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.003381 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.668600 B = 8279.217021 C = 9031.611357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.063 4.063 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.282 1.282 7 C -0.170 4.170 8 H 0.056 0.944 9 N -0.617 5.617 10 C 0.100 3.900 11 C 0.137 3.863 12 N -0.607 5.607 13 C 0.104 3.896 14 C 0.146 3.854 15 H 0.143 0.857 16 N -0.704 5.704 17 C 0.613 3.387 18 O -0.540 6.540 19 C -0.302 4.302 20 C 0.079 3.921 21 N -0.277 5.277 22 N -0.288 5.288 23 S 0.490 5.510 24 C -0.161 4.161 25 C 0.478 3.522 26 O -0.512 6.512 27 C 0.160 3.840 28 H 0.237 0.763 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.410 0.590 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.029 0.971 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -18.706 12.969 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.208 1.208 7 C -0.299 4.299 8 H 0.074 0.926 9 N -0.342 5.342 10 C -0.026 4.026 11 C 0.032 3.968 12 N -0.342 5.342 13 C -0.018 4.018 14 C 0.042 3.958 15 H 0.161 0.839 16 N -0.356 5.356 17 C 0.397 3.603 18 O -0.418 6.418 19 C -0.443 4.443 20 C -0.089 4.089 21 N -0.140 5.140 22 N -0.270 5.270 23 S 0.625 5.375 24 C -0.202 4.202 25 C 0.264 3.736 26 O -0.384 6.384 27 C 0.033 3.967 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.246 0.754 35 H 0.251 0.749 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.046 0.954 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.515 -17.465 12.553 22.473 hybrid contribution 1.367 1.576 0.262 2.103 sum -5.149 -15.889 12.814 21.052 Atomic orbital electron populations 1.69932 1.05814 1.24114 1.60936 1.25098 0.96146 0.99351 1.04803 0.85423 0.77704 0.81512 0.76939 1.21545 1.22852 1.20826 1.18794 0.89555 0.84035 1.37562 0.92623 1.45910 1.06556 1.00036 1.81728 1.23236 0.97259 0.84628 0.97495 1.22580 0.96040 0.98687 0.79453 1.47996 1.62894 1.15626 1.07731 1.22603 1.05646 0.88484 0.85084 1.21993 0.81635 0.95314 0.96885 0.83940 1.45891 1.14803 1.68947 1.05965 1.16441 0.84318 0.76780 0.82728 1.90855 1.46186 1.49984 1.54742 1.28020 1.02141 1.15581 0.98576 1.24806 0.90132 0.95400 0.98536 1.70753 1.08145 1.15740 1.19346 1.78706 1.27467 1.21114 0.99677 1.82605 0.94677 1.42683 1.17531 1.22794 1.03725 1.00438 0.93284 1.21534 0.77947 0.84186 0.89977 1.91115 1.48490 1.26284 1.72512 1.22341 0.87578 0.91187 0.95569 0.95374 0.94387 0.92260 0.83975 0.86734 0.86608 0.75367 0.74913 0.89956 0.85933 0.95373 0.95880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.67 11.74 21.65 0.25 -60.41 16 2 C -0.06 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.95 50.46 29.56 68.60 2.03 52.48 16 4 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 5 H -0.30 -16.14 7.11 99.48 0.71 -15.44 16 6 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.17 -10.13 8.81 84.03 0.74 -9.39 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 9 N -0.62 -31.51 2.16 -717.40 -1.55 -33.06 16 10 C 0.10 3.72 8.50 86.48 0.74 4.46 16 11 C 0.14 4.08 4.93 46.75 0.23 4.31 16 12 N -0.61 -15.76 3.16 -799.74 -2.52 -18.28 16 13 C 0.10 1.29 6.97 86.83 0.61 1.89 16 14 C 0.15 2.13 3.53 46.05 0.16 2.30 16 15 H 0.14 1.60 7.54 -2.39 -0.02 1.59 16 16 N -0.70 -10.47 5.12 -441.02 -2.26 -12.72 16 17 C 0.61 10.89 7.80 86.59 0.68 11.57 16 18 O -0.54 -12.41 16.62 -4.11 -0.07 -12.47 16 19 C -0.30 -4.89 6.81 24.62 0.17 -4.72 16 20 C 0.08 1.31 11.55 84.78 0.98 2.29 16 21 N -0.28 -5.77 11.54 -57.87 -0.67 -6.44 16 22 N -0.29 -5.98 12.51 37.02 0.46 -5.52 16 23 S 0.49 7.24 23.05 -56.49 -1.30 5.94 16 24 C -0.16 -3.81 6.58 30.59 0.20 -3.61 16 25 C 0.48 16.65 7.50 87.90 0.66 17.31 16 26 O -0.51 -25.96 13.17 -3.02 -0.04 -26.00 16 27 C 0.16 7.15 6.36 86.48 0.55 7.70 16 28 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.11 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.41 5.25 8.09 -92.70 -0.75 4.50 16 35 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 37 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.02 1.20 7.30 -2.39 -0.02 1.19 16 Total: -1.00 -88.97 346.95 0.87 -88.10 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 0.36 Total: -2.33 kcal Atomic # 6 Polarization: 24.55 SS G_CDS: 6.17 Total: 30.73 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -6.28 Total: -136.45 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.11 Total: -38.48 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.03 Total: 52.48 kcal Atomic # 16 Polarization: 7.24 SS G_CDS: -1.30 Total: 5.94 kcal Total: -88.97 0.87 -88.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094712369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.953 kcal (2) G-P(sol) polarization free energy of solvation -88.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds