Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47521 * 240.00032 * 3 2 1 5 5 H 1.48497 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47134 * 120.00015 * 3 2 1 7 7 C 1.38816 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.48802 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11292 * 155.35931 * 10 9 7 12 12 N 1.46506 * 113.74261 * 137.95420 * 11 10 9 13 13 C 1.46819 * 124.33768 * 121.85516 * 12 11 10 14 14 C 1.54479 * 105.44722 * 197.00065 * 13 12 11 15 15 H 1.08996 * 110.96738 * 92.76689 * 14 13 12 16 16 N 1.46496 * 110.96816 * 216.49417 * 14 13 12 17 17 C 1.34777 * 119.99613 * 201.90695 * 16 14 13 18 18 O 1.21619 * 120.00479 * 0.02562 * 17 16 14 19 19 C 1.47176 * 120.00033 * 180.02562 * 17 16 14 20 20 C 1.38239 * 128.47682 * 179.70557 * 19 17 16 21 21 N 1.31249 * 111.88795 * 179.81088 * 20 19 17 22 22 N 1.27331 * 120.03587 * 0.53387 * 21 20 19 23 23 S 1.56640 * 109.74268 * 359.69353 * 22 21 20 24 24 C 1.54634 * 101.79727 * 334.63441 * 14 13 12 25 25 C 1.34420 * 124.34520 * 301.89804 * 12 11 10 26 26 O 1.21280 * 124.94110 * 359.55463 * 25 12 11 27 27 C 1.47807 * 134.45843 * 359.86929 * 9 7 2 28 28 H 0.96997 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76993 * 41.06274 * 10 9 7 30 30 H 1.08996 * 113.76739 * 269.65870 * 10 9 7 31 31 H 1.09004 * 113.74605 * 269.15259 * 11 10 9 32 32 H 1.09000 * 110.23624 * 78.02161 * 13 12 11 33 33 H 1.08998 * 110.28278 * 316.01038 * 13 12 11 34 34 H 0.96996 * 120.00516 * 21.91680 * 16 14 13 35 35 H 1.07999 * 124.05897 * 359.97438 * 20 19 17 36 36 H 1.08992 * 110.48427 * 143.45822 * 24 14 13 37 37 H 1.09002 * 110.47839 * 266.10226 * 24 14 13 38 38 H 1.09004 * 113.76885 * 90.37967 * 27 9 7 39 39 H 1.09005 * 113.83545 * 318.91638 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6398 12 7 -0.3334 -5.2614 0.0970 13 6 -0.7605 -6.4141 0.8997 14 6 -1.0129 -7.5512 -0.1150 15 1 -0.1208 -8.1641 -0.2437 16 7 -2.1558 -8.3726 0.2916 17 6 -2.2801 -9.6315 -0.1732 18 8 -1.4433 -10.0859 -0.9298 19 6 -3.4286 -10.4565 0.2347 20 6 -3.7304 -11.7538 -0.1354 21 7 -4.8377 -12.1781 0.4271 22 7 -5.4952 -11.4089 1.2001 23 16 -4.7675 -10.0265 1.3151 24 6 -1.3311 -6.7594 -1.4045 25 6 -0.6459 -5.4263 -1.1999 26 8 -0.4130 -4.6230 -2.0782 27 6 -0.1057 -2.7570 0.0023 28 1 -0.4850 0.8400 0.0004 29 1 2.5624 -4.0324 0.6547 30 1 1.8319 -4.2350 -0.9980 31 1 0.3594 -4.0639 1.7296 32 1 -1.6783 -6.1789 1.4386 33 1 0.0255 -6.6998 1.5988 34 1 -2.8231 -8.0103 0.8952 35 1 -3.1260 -12.3479 -0.8048 36 1 -0.9211 -7.2694 -2.2762 37 1 -2.4071 -6.6227 -1.5123 38 1 -0.5319 -2.8718 -0.9944 39 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094712370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = 84.950346 kcal Electronic energy + Delta-G solvation = -25884.008988 eV Core-core repulsion = 21957.306932 eV Total energy + Delta-G solvation = -3926.702056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.41344 -40.82990 -39.69865 -37.33204 -36.54637 -34.41933 -32.77033 -32.16491 -30.52920 -28.28975 -27.61683 -27.00172 -24.77210 -24.01719 -23.34380 -21.78082 -21.30368 -20.47010 -19.84735 -18.40956 -18.05547 -17.18153 -16.78117 -16.44111 -16.33041 -15.81729 -15.41181 -15.18453 -14.93207 -14.69643 -14.21199 -13.98131 -13.68150 -13.59188 -13.39555 -13.25675 -12.55887 -12.48547 -12.18268 -11.94403 -11.67671 -11.43972 -11.26439 -10.93319 -10.85389 -10.74394 -10.70862 -10.66453 -10.43027 -10.23981 -10.03562 -9.94089 -9.52188 -9.29522 -8.69517 -8.26498 -6.84522 -5.74643 -3.06581 -0.85260 0.21724 0.90051 1.41099 2.24173 2.37778 2.84024 3.18467 3.41310 3.45061 3.45784 3.46914 3.96290 4.10518 4.19009 4.33734 4.49411 4.66224 4.72273 5.02512 5.16949 5.25936 5.27065 5.42491 5.50270 5.59440 5.60109 5.77724 5.83587 6.24957 6.47581 6.52188 6.68604 6.82742 7.07026 7.25466 7.39980 7.42425 7.55092 7.57942 7.98801 8.46592 9.06165 9.72369 10.60867 11.42623 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.002086 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.357640 B =13420.080937 C =13778.445386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.606 5.606 13 C 0.098 3.902 14 C 0.135 3.865 15 H 0.119 0.881 16 N -0.711 5.711 17 C 0.607 3.393 18 O -0.507 6.507 19 C -0.290 4.290 20 C 0.078 3.922 21 N -0.251 5.251 22 N -0.252 5.252 23 S 0.427 5.573 24 C -0.168 4.168 25 C 0.515 3.485 26 O -0.504 6.504 27 C 0.153 3.847 28 H 0.254 0.746 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.403 0.597 35 H 0.217 0.783 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -23.282 5.594 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.341 5.341 13 C -0.026 4.026 14 C 0.030 3.970 15 H 0.136 0.864 16 N -0.363 5.363 17 C 0.390 3.610 18 O -0.382 6.382 19 C -0.431 4.431 20 C -0.089 4.089 21 N -0.115 5.115 22 N -0.234 5.234 23 S 0.562 5.438 24 C -0.210 4.210 25 C 0.301 3.699 26 O -0.378 6.378 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.238 0.762 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.595 -22.712 5.707 25.703 hybrid contribution 1.202 0.696 -0.656 1.536 sum -9.393 -22.016 5.051 24.463 Atomic orbital electron populations 1.69813 1.05029 1.25441 1.56413 1.24803 0.95701 0.97566 1.02389 0.86172 0.78449 0.83036 0.77924 1.21152 1.21556 1.21078 1.18940 0.90178 0.81705 1.44030 0.90218 1.45698 1.02417 0.99160 1.85851 1.22927 0.94165 0.86894 0.97595 1.24115 0.94276 0.83607 0.98424 1.48530 1.58854 1.18864 1.07882 1.22211 1.01349 0.85251 0.93835 1.21928 0.89600 0.91520 0.93948 0.86360 1.45790 1.27412 1.13130 1.49994 1.16418 0.83245 0.80838 0.80537 1.90899 1.40988 1.71909 1.34403 1.28021 1.04828 1.00697 1.09588 1.24529 0.92986 0.92452 0.98892 1.70731 1.06636 1.26982 1.07171 1.78920 1.24535 1.02594 1.17332 1.82663 1.07436 1.21060 1.32635 1.22855 1.03295 0.95224 0.99611 1.20546 0.78864 0.87838 0.82629 1.90806 1.53873 1.47689 1.45421 1.22784 0.88343 0.87159 0.98980 0.93593 0.93892 0.94191 0.87556 0.90723 0.89317 0.76158 0.76616 0.87530 0.87660 0.92615 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -16.00 3.70 -177.91 -0.66 -16.66 16 10 C 0.11 2.35 8.44 -2.96 -0.03 2.33 16 11 C 0.10 1.77 4.81 -70.16 -0.34 1.43 16 12 N -0.61 -8.49 3.16 -166.61 -0.53 -9.01 16 13 C 0.10 0.81 7.08 -3.09 -0.02 0.78 16 14 C 0.14 1.04 3.48 -66.30 -0.23 0.81 16 15 H 0.12 0.97 7.63 -51.93 -0.40 0.58 16 16 N -0.71 -4.03 5.16 -53.38 -0.28 -4.30 16 17 C 0.61 4.52 7.80 -12.63 -0.10 4.43 16 18 O -0.51 -5.52 16.67 5.26 0.09 -5.44 16 19 C -0.29 -1.78 6.81 -35.95 -0.25 -2.02 16 20 C 0.08 0.52 11.55 -17.80 -0.21 0.31 16 21 N -0.25 -2.12 11.54 30.36 0.35 -1.77 16 22 N -0.25 -2.03 12.51 60.35 0.75 -1.28 16 23 S 0.43 2.01 23.05 -107.50 -2.48 -0.47 16 24 C -0.17 -1.75 6.59 -26.74 -0.18 -1.93 16 25 C 0.52 8.09 7.42 -10.86 -0.08 8.01 16 26 O -0.50 -10.75 14.61 5.56 0.08 -10.67 16 27 C 0.15 3.70 6.90 -2.85 -0.02 3.68 16 28 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.90 7.25 -51.93 -0.38 0.52 16 31 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 32 H 0.07 0.46 7.78 -51.93 -0.40 0.05 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 1.23 7.82 -40.82 -0.32 0.91 16 35 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.06 1.49 5.72 -51.93 -0.30 1.19 16 39 H 0.07 1.85 7.17 -51.93 -0.37 1.47 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -37.70 347.95 -7.75 -45.45 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.24 Total: -2.38 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -1.70 Total: 11.00 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.28 Total: -60.16 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.17 Total: -16.11 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.48 Total: -0.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.70 -7.75 -45.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094712370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.405 kcal (2) G-P(sol) polarization free energy of solvation -37.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds