Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47521 * 240.00032 * 3 2 1 5 5 H 1.48497 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47134 * 120.00015 * 3 2 1 7 7 C 1.38816 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.48802 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11292 * 155.35931 * 10 9 7 12 12 N 1.46506 * 113.74261 * 137.95420 * 11 10 9 13 13 C 1.46819 * 124.33768 * 121.85516 * 12 11 10 14 14 C 1.54479 * 105.44722 * 197.00065 * 13 12 11 15 15 H 1.08996 * 110.96738 * 92.76689 * 14 13 12 16 16 N 1.46496 * 110.96816 * 216.49417 * 14 13 12 17 17 C 1.34777 * 119.99613 * 201.90695 * 16 14 13 18 18 O 1.21619 * 120.00479 * 0.02562 * 17 16 14 19 19 C 1.47176 * 120.00033 * 180.02562 * 17 16 14 20 20 C 1.38239 * 128.47682 * 179.70557 * 19 17 16 21 21 N 1.31249 * 111.88795 * 179.81088 * 20 19 17 22 22 N 1.27331 * 120.03587 * 0.53387 * 21 20 19 23 23 S 1.56640 * 109.74268 * 359.69353 * 22 21 20 24 24 C 1.54634 * 101.79727 * 334.63441 * 14 13 12 25 25 C 1.34420 * 124.34520 * 301.89804 * 12 11 10 26 26 O 1.21280 * 124.94110 * 359.55463 * 25 12 11 27 27 C 1.47807 * 134.45843 * 359.86929 * 9 7 2 28 28 H 0.96997 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76993 * 41.06274 * 10 9 7 30 30 H 1.08996 * 113.76739 * 269.65870 * 10 9 7 31 31 H 1.09004 * 113.74605 * 269.15259 * 11 10 9 32 32 H 1.09000 * 110.23624 * 78.02161 * 13 12 11 33 33 H 1.08998 * 110.28278 * 316.01038 * 13 12 11 34 34 H 0.96996 * 120.00516 * 21.91680 * 16 14 13 35 35 H 1.07999 * 124.05897 * 359.97438 * 20 19 17 36 36 H 1.08992 * 110.48427 * 143.45822 * 24 14 13 37 37 H 1.09002 * 110.47839 * 266.10226 * 24 14 13 38 38 H 1.09004 * 113.76885 * 90.37967 * 27 9 7 39 39 H 1.09005 * 113.83545 * 318.91638 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6398 12 7 -0.3334 -5.2614 0.0970 13 6 -0.7605 -6.4141 0.8997 14 6 -1.0129 -7.5512 -0.1150 15 1 -0.1208 -8.1641 -0.2437 16 7 -2.1558 -8.3726 0.2916 17 6 -2.2801 -9.6315 -0.1732 18 8 -1.4433 -10.0859 -0.9298 19 6 -3.4286 -10.4565 0.2347 20 6 -3.7304 -11.7538 -0.1354 21 7 -4.8377 -12.1781 0.4271 22 7 -5.4952 -11.4089 1.2001 23 16 -4.7675 -10.0265 1.3151 24 6 -1.3311 -6.7594 -1.4045 25 6 -0.6459 -5.4263 -1.1999 26 8 -0.4130 -4.6230 -2.0782 27 6 -0.1057 -2.7570 0.0023 28 1 -0.4850 0.8400 0.0004 29 1 2.5624 -4.0324 0.6547 30 1 1.8319 -4.2350 -0.9980 31 1 0.3594 -4.0639 1.7296 32 1 -1.6783 -6.1789 1.4386 33 1 0.0255 -6.6998 1.5988 34 1 -2.8231 -8.0103 0.8952 35 1 -3.1260 -12.3479 -0.8048 36 1 -0.9211 -7.2694 -2.2762 37 1 -2.4071 -6.6227 -1.5123 38 1 -0.5319 -2.8718 -0.9944 39 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094712370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = 54.618740 kcal Electronic energy + Delta-G solvation = -25885.324265 eV Core-core repulsion = 21957.306932 eV Total energy + Delta-G solvation = -3928.017333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01683 -41.76364 -40.54892 -38.92775 -37.65941 -35.38164 -34.21160 -33.22507 -31.66543 -29.25569 -28.93315 -27.98927 -26.59600 -25.31080 -24.39950 -22.52691 -22.15523 -21.76683 -20.34208 -19.75509 -18.80297 -18.61188 -17.89571 -17.65247 -16.99977 -16.95546 -16.49961 -16.30793 -15.88474 -15.68720 -15.53822 -15.22622 -15.00635 -14.59745 -14.54685 -14.02687 -13.78784 -13.61094 -13.39964 -13.25976 -12.98530 -12.80710 -12.78173 -12.58913 -12.26524 -12.02183 -11.93121 -11.53754 -11.48979 -11.22938 -11.15513 -11.07749 -10.89080 -10.69435 -10.23697 -9.55981 -8.93253 -7.92060 -5.26258 -1.33482 -0.21221 0.44890 0.90055 1.43714 1.48451 1.54374 1.59422 1.63473 1.82498 2.07238 2.49350 2.98104 3.25999 3.30150 3.46391 3.48408 3.60394 3.69129 3.80131 3.90281 4.03864 4.27249 4.54259 4.59229 4.61760 4.68241 4.75617 4.81160 4.87675 4.94186 5.19831 5.23071 5.25345 5.49150 5.85824 5.90778 6.20835 6.26925 6.60028 6.89279 6.89438 7.24298 7.58212 8.53656 9.24998 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.002086 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.357640 B =13420.080937 C =13778.445386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.637 5.637 10 C 0.111 3.889 11 C 0.139 3.861 12 N -0.605 5.605 13 C 0.097 3.903 14 C 0.151 3.849 15 H 0.120 0.880 16 N -0.695 5.695 17 C 0.614 3.386 18 O -0.543 6.543 19 C -0.302 4.302 20 C 0.077 3.923 21 N -0.280 5.280 22 N -0.293 5.293 23 S 0.514 5.486 24 C -0.156 4.156 25 C 0.503 3.497 26 O -0.573 6.573 27 C 0.148 3.852 28 H 0.249 0.751 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.419 0.581 35 H 0.229 0.771 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.022 0.978 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 -24.618 7.784 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.366 4.366 8 H 0.102 0.898 9 N -0.363 5.363 10 C -0.016 4.016 11 C 0.035 3.965 12 N -0.338 5.338 13 C -0.025 4.025 14 C 0.046 3.954 15 H 0.138 0.862 16 N -0.348 5.348 17 C 0.398 3.602 18 O -0.420 6.420 19 C -0.443 4.443 20 C -0.091 4.091 21 N -0.143 5.143 22 N -0.274 5.274 23 S 0.648 5.352 24 C -0.197 4.197 25 C 0.292 3.708 26 O -0.452 6.452 27 C 0.022 3.978 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.258 0.742 35 H 0.245 0.755 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.040 0.960 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.657 -24.129 7.964 27.553 hybrid contribution 1.179 1.097 -1.347 2.100 sum -9.478 -23.031 6.616 25.769 Atomic orbital electron populations 1.70023 1.06571 1.25750 1.57864 1.25718 0.96647 1.01125 1.02715 0.85081 0.77115 0.78341 0.78348 1.20852 1.21897 1.19373 1.19388 0.90831 0.83199 1.43160 0.89755 1.46153 1.03697 1.00608 1.85885 1.23026 0.96988 0.84094 0.97449 1.23373 0.91406 0.82482 0.99258 1.48467 1.57806 1.19272 1.08299 1.22592 1.03853 0.82680 0.93410 1.21684 0.90209 0.91319 0.92215 0.86244 1.45562 1.27175 1.12317 1.49745 1.16470 0.82940 0.81017 0.79815 1.90895 1.42366 1.72709 1.36063 1.27913 1.05231 1.00621 1.10545 1.24771 0.92659 0.92917 0.98769 1.70785 1.07454 1.27950 1.08099 1.78660 1.25994 1.04491 1.18271 1.82270 1.04899 1.18182 1.29813 1.22787 1.03523 0.92221 1.01194 1.21479 0.78152 0.88850 0.82365 1.90773 1.56568 1.50290 1.47537 1.22596 0.87238 0.90694 0.97276 0.94224 0.91312 0.95998 0.84185 0.87368 0.86435 0.74231 0.75508 0.87785 0.85934 0.96039 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 11.39 21.65 0.25 -59.19 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.85 10.70 84.04 0.90 -12.95 16 8 H 0.08 4.67 7.83 -2.91 -0.02 4.64 16 9 N -0.64 -34.31 3.70 -716.77 -2.65 -36.96 16 10 C 0.11 4.62 8.44 86.49 0.73 5.35 16 11 C 0.14 4.79 4.81 46.74 0.22 5.02 16 12 N -0.61 -15.67 3.16 -799.61 -2.52 -18.19 16 13 C 0.10 1.14 7.08 86.82 0.61 1.75 16 14 C 0.15 1.79 3.48 46.05 0.16 1.95 16 15 H 0.12 1.55 7.63 -2.39 -0.02 1.53 16 16 N -0.69 -5.08 5.16 -441.04 -2.28 -7.36 16 17 C 0.61 7.37 7.80 86.59 0.68 8.05 16 18 O -0.54 -10.73 16.67 -4.09 -0.07 -10.80 16 19 C -0.30 -2.93 6.81 24.62 0.17 -2.76 16 20 C 0.08 0.90 11.55 84.78 0.98 1.88 16 21 N -0.28 -4.43 11.54 -57.87 -0.67 -5.09 16 22 N -0.29 -4.22 12.51 37.02 0.46 -3.76 16 23 S 0.51 3.26 23.05 -56.49 -1.30 1.95 16 24 C -0.16 -2.94 6.59 30.59 0.20 -2.74 16 25 C 0.50 15.61 7.42 87.90 0.65 16.27 16 26 O -0.57 -25.63 14.61 -3.03 -0.04 -25.68 16 27 C 0.15 7.38 6.90 86.44 0.60 7.98 16 28 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 30 H 0.02 1.01 7.25 -2.39 -0.02 0.99 16 31 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.11 0.67 7.78 -2.39 -0.02 0.65 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 0.46 7.82 -92.71 -0.73 -0.26 16 35 H 0.23 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.12 1.91 8.08 -2.39 -0.02 1.89 16 38 H 0.02 1.23 5.72 -2.39 -0.01 1.22 16 39 H 0.04 2.36 7.17 -2.38 -0.02 2.34 16 Total: -1.00 -88.50 347.95 -0.04 -88.54 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 0.40 Total: 1.54 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.37 Total: 26.18 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -7.41 Total: -130.56 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.11 Total: -36.48 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.30 Total: 1.95 kcal Total: -88.50 -0.04 -88.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094712370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.154 kcal (2) G-P(sol) polarization free energy of solvation -88.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds