Wall clock time and date at job start Tue Mar 31 2020 19:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48507 * 109.46891 * 269.99623 * 3 2 1 5 5 H 1.48493 * 109.47493 * 29.99419 * 3 2 1 6 6 H 1.48498 * 109.47269 * 149.99875 * 3 2 1 7 7 C 1.38816 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49203 * 180.02562 * 9 7 2 11 11 C 1.53937 * 86.11751 * 155.35230 * 10 9 7 12 12 N 1.46509 * 113.74101 * 137.95031 * 11 10 9 13 13 C 1.46758 * 124.34896 * 121.92700 * 12 11 10 14 14 C 1.54480 * 105.47394 * 162.96268 * 13 12 11 15 15 H 1.09002 * 110.96791 * 267.29435 * 14 13 12 16 16 N 1.46500 * 110.97033 * 143.56811 * 14 13 12 17 17 C 1.34779 * 119.99977 * 158.08785 * 16 14 13 18 18 O 1.21605 * 119.99889 * 0.02562 * 17 16 14 19 19 C 1.47453 * 119.99956 * 179.97438 * 17 16 14 20 20 C 1.37977 * 124.15216 * 180.02562 * 19 17 16 21 21 S 1.72104 * 104.03114 * 180.02562 * 20 19 17 22 22 N 1.56407 * 96.15326 * 359.97438 * 21 20 19 23 23 N 1.27421 * 109.87406 * 359.72777 * 22 21 20 24 24 C 1.54629 * 101.76349 * 25.41398 * 14 13 12 25 25 C 1.34420 * 124.34752 * 301.90047 * 12 11 10 26 26 O 1.21280 * 124.94332 * 0.46533 * 25 12 11 27 27 C 1.47809 * 134.45960 * 359.86313 * 9 7 2 28 28 H 0.96998 * 120.00166 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76882 * 41.04838 * 10 9 7 30 30 H 1.09005 * 113.76545 * 269.65522 * 10 9 7 31 31 H 1.09003 * 113.74633 * 269.15120 * 11 10 9 32 32 H 1.09001 * 110.25014 * 43.95748 * 13 12 11 33 33 H 1.08999 * 110.31832 * 281.99659 * 13 12 11 34 34 H 0.96998 * 120.00313 * 338.08861 * 16 14 13 35 35 H 1.08001 * 127.98240 * 0.03810 * 20 19 17 36 36 H 1.09000 * 110.49023 * 93.88362 * 24 14 13 37 37 H 1.09002 * 110.48233 * 216.52496 * 24 14 13 38 38 H 1.08997 * 113.76894 * 90.38009 * 27 9 7 39 39 H 1.09005 * 113.83668 * 318.92317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3466 -4.0827 0.6410 12 7 -0.3335 -5.2614 0.0982 13 6 -0.7624 -6.4128 0.9007 14 6 -1.7849 -7.1686 0.0235 15 1 -2.8011 -6.8352 0.2337 16 7 -1.6629 -8.6171 0.2061 17 6 -2.6993 -9.4241 -0.0959 18 8 -3.7355 -8.9498 -0.5204 19 6 -2.5764 -10.8820 0.0874 20 6 -3.5804 -11.7855 -0.1942 21 16 -2.8918 -13.3118 0.2033 22 7 -1.5026 -12.7556 0.6582 23 7 -1.4834 -11.4872 0.5381 24 6 -1.3487 -6.7509 -1.4000 25 6 -0.6452 -5.4269 -1.1989 26 8 -0.3977 -4.6309 -2.0798 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8400 -0.0004 29 1 2.5619 -4.0321 0.6573 30 1 1.8324 -4.2355 -0.9958 31 1 0.3582 -4.0632 1.7308 32 1 -1.2340 -6.0748 1.8235 33 1 0.0888 -7.0551 1.1262 34 1 -0.8363 -8.9954 0.5444 35 1 -4.5699 -11.5819 -0.5761 36 1 -0.6636 -7.4870 -1.8205 37 1 -2.2190 -6.6265 -2.0444 38 1 -0.5312 -2.8723 -0.9943 39 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094767335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:32 Heat of formation + Delta-G solvation = 82.024211 kcal Electronic energy + Delta-G solvation = -25946.855380 eV Core-core repulsion = 22020.026437 eV Total energy + Delta-G solvation = -3926.828943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.63220 -40.62974 -39.43598 -37.26743 -36.45668 -34.26929 -32.74903 -32.12951 -30.39845 -27.88872 -27.51512 -27.00273 -24.72735 -24.45970 -23.33681 -21.75760 -21.29911 -20.50297 -19.79559 -18.34159 -17.36251 -16.98232 -16.75581 -16.52765 -16.25947 -15.95295 -15.43260 -15.01944 -14.91878 -14.57576 -14.15049 -13.77871 -13.57833 -13.51020 -13.31525 -13.14492 -12.62294 -12.44990 -12.08596 -11.85156 -11.56704 -11.42342 -11.21505 -10.96189 -10.84308 -10.68862 -10.66519 -10.64006 -10.48346 -10.17974 -9.97834 -9.79139 -9.48305 -9.19175 -8.65431 -8.19102 -6.79972 -5.70454 -3.02440 -0.49387 0.35488 0.90112 0.97568 2.49908 2.63020 2.91903 3.22317 3.32894 3.44048 3.48868 3.50177 4.10267 4.19486 4.36008 4.45249 4.52947 4.74867 4.80574 4.86177 5.23844 5.33609 5.40762 5.54493 5.56922 5.61805 5.73551 5.83847 5.99334 6.30094 6.52978 6.58525 6.77711 6.88585 7.07070 7.30910 7.48634 7.59878 7.60483 7.64005 8.02949 8.54245 9.10213 9.76360 10.65412 11.46821 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.001975 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.681701 B =14176.038974 C =14430.477334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.605 5.605 13 C 0.099 3.901 14 C 0.133 3.867 15 H 0.117 0.883 16 N -0.699 5.699 17 C 0.609 3.391 18 O -0.517 6.517 19 C -0.023 4.023 20 C -0.235 4.235 21 S 0.467 5.533 22 N -0.288 5.288 23 N -0.210 5.210 24 C -0.168 4.168 25 C 0.516 3.484 26 O -0.506 6.506 27 C 0.153 3.847 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.210 0.790 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 -30.505 3.457 32.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.332 5.332 10 C -0.015 4.015 11 C -0.004 4.004 12 N -0.341 5.341 13 C -0.026 4.026 14 C 0.028 3.972 15 H 0.135 0.865 16 N -0.351 5.351 17 C 0.390 3.610 18 O -0.391 6.391 19 C -0.171 4.171 20 C -0.392 4.392 21 S 0.603 5.397 22 N -0.269 5.269 23 N -0.081 5.081 24 C -0.209 4.209 25 C 0.302 3.698 26 O -0.380 6.380 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.227 0.773 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.476 -30.691 3.280 32.009 hybrid contribution 0.152 1.939 -0.306 1.969 sum -8.325 -28.752 2.974 30.080 Atomic orbital electron populations 1.69827 1.05013 1.25299 1.56473 1.24808 0.95702 0.97557 1.02466 0.86095 0.78539 0.83381 0.77592 1.21613 1.21649 1.20624 1.18983 0.90183 0.81711 1.43885 0.90194 1.45708 1.02446 0.99147 1.85850 1.22920 0.94173 0.86901 0.97553 1.24093 0.94238 0.83644 0.98430 1.48504 1.58855 1.18790 1.07919 1.22195 0.96940 0.88381 0.95081 1.21927 1.01562 0.78795 0.94895 0.86477 1.45745 1.16853 1.06569 1.65960 1.16594 0.83830 0.82645 0.77936 1.90885 1.28516 1.74790 1.44905 1.22631 0.90334 0.97970 1.06151 1.28934 1.06958 0.98050 1.05237 1.81651 1.04107 1.11650 1.42329 1.78660 1.18692 1.06904 1.22620 1.71533 1.23179 1.00216 1.13159 1.22846 1.02819 0.97157 0.98099 1.20554 0.79113 0.87508 0.82643 1.90798 1.54378 1.47582 1.45247 1.22780 0.88298 0.87224 0.98981 0.93647 0.93945 0.94225 0.87563 0.89366 0.90714 0.74980 0.77277 0.87754 0.87572 0.92637 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.34 11.39 55.49 0.63 -27.71 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.61 -16.44 3.70 -177.91 -0.66 -17.10 16 10 C 0.11 2.44 8.43 -2.97 -0.03 2.42 16 11 C 0.10 1.88 4.81 -70.16 -0.34 1.54 16 12 N -0.61 -9.26 3.16 -166.66 -0.53 -9.79 16 13 C 0.10 0.98 7.07 -3.13 -0.02 0.96 16 14 C 0.13 1.27 3.48 -66.30 -0.23 1.04 16 15 H 0.12 1.17 7.63 -51.93 -0.40 0.78 16 16 N -0.70 -5.67 5.17 -53.29 -0.28 -5.95 16 17 C 0.61 5.74 7.81 -12.51 -0.10 5.64 16 18 O -0.52 -6.26 16.49 5.27 0.09 -6.17 16 19 C -0.02 -0.19 6.87 -83.78 -0.58 -0.76 16 20 C -0.23 -1.23 11.21 30.64 0.34 -0.89 16 21 S 0.47 1.83 23.38 -107.50 -2.51 -0.69 16 22 N -0.29 -2.24 12.49 60.35 0.75 -1.49 16 23 N -0.21 -1.80 11.24 32.73 0.37 -1.44 16 24 C -0.17 -1.98 6.59 -26.74 -0.18 -2.16 16 25 C 0.52 8.71 7.42 -10.86 -0.08 8.63 16 26 O -0.51 -11.28 14.61 5.56 0.08 -11.20 16 27 C 0.15 3.84 6.90 -2.85 -0.02 3.82 16 28 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.92 7.22 -51.93 -0.38 0.55 16 31 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 34 H 0.41 2.73 7.98 -40.82 -0.33 2.41 16 35 H 0.21 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.54 5.75 -51.93 -0.30 1.24 16 39 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -37.96 347.64 -7.57 -45.53 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.25 Total: -0.37 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -1.48 Total: 13.28 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.29 Total: -63.46 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.51 Total: -0.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.96 -7.57 -45.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094767335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.550 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds