Wall clock time and date at job start Tue Mar 31 2020 19:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48507 * 109.46891 * 269.99623 * 3 2 1 5 5 H 1.48493 * 109.47493 * 29.99419 * 3 2 1 6 6 H 1.48498 * 109.47269 * 149.99875 * 3 2 1 7 7 C 1.38816 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49203 * 180.02562 * 9 7 2 11 11 C 1.53937 * 86.11751 * 155.35230 * 10 9 7 12 12 N 1.46509 * 113.74101 * 137.95031 * 11 10 9 13 13 C 1.46758 * 124.34896 * 121.92700 * 12 11 10 14 14 C 1.54480 * 105.47394 * 162.96268 * 13 12 11 15 15 H 1.09002 * 110.96791 * 267.29435 * 14 13 12 16 16 N 1.46500 * 110.97033 * 143.56811 * 14 13 12 17 17 C 1.34779 * 119.99977 * 158.08785 * 16 14 13 18 18 O 1.21605 * 119.99889 * 0.02562 * 17 16 14 19 19 C 1.47453 * 119.99956 * 179.97438 * 17 16 14 20 20 C 1.37977 * 124.15216 * 180.02562 * 19 17 16 21 21 S 1.72104 * 104.03114 * 180.02562 * 20 19 17 22 22 N 1.56407 * 96.15326 * 359.97438 * 21 20 19 23 23 N 1.27421 * 109.87406 * 359.72777 * 22 21 20 24 24 C 1.54629 * 101.76349 * 25.41398 * 14 13 12 25 25 C 1.34420 * 124.34752 * 301.90047 * 12 11 10 26 26 O 1.21280 * 124.94332 * 0.46533 * 25 12 11 27 27 C 1.47809 * 134.45960 * 359.86313 * 9 7 2 28 28 H 0.96998 * 120.00166 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.76882 * 41.04838 * 10 9 7 30 30 H 1.09005 * 113.76545 * 269.65522 * 10 9 7 31 31 H 1.09003 * 113.74633 * 269.15120 * 11 10 9 32 32 H 1.09001 * 110.25014 * 43.95748 * 13 12 11 33 33 H 1.08999 * 110.31832 * 281.99659 * 13 12 11 34 34 H 0.96998 * 120.00313 * 338.08861 * 16 14 13 35 35 H 1.08001 * 127.98240 * 0.03810 * 20 19 17 36 36 H 1.09000 * 110.49023 * 93.88362 * 24 14 13 37 37 H 1.09002 * 110.48233 * 216.52496 * 24 14 13 38 38 H 1.08997 * 113.76894 * 90.38009 * 27 9 7 39 39 H 1.09005 * 113.83668 * 318.92317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3466 -4.0827 0.6410 12 7 -0.3335 -5.2614 0.0982 13 6 -0.7624 -6.4128 0.9007 14 6 -1.7849 -7.1686 0.0235 15 1 -2.8011 -6.8352 0.2337 16 7 -1.6629 -8.6171 0.2061 17 6 -2.6993 -9.4241 -0.0959 18 8 -3.7355 -8.9498 -0.5204 19 6 -2.5764 -10.8820 0.0874 20 6 -3.5804 -11.7855 -0.1942 21 16 -2.8918 -13.3118 0.2033 22 7 -1.5026 -12.7556 0.6582 23 7 -1.4834 -11.4872 0.5381 24 6 -1.3487 -6.7509 -1.4000 25 6 -0.6452 -5.4269 -1.1989 26 8 -0.3977 -4.6309 -2.0798 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8400 -0.0004 29 1 2.5619 -4.0321 0.6573 30 1 1.8324 -4.2355 -0.9958 31 1 0.3582 -4.0632 1.7308 32 1 -1.2340 -6.0748 1.8235 33 1 0.0888 -7.0551 1.1262 34 1 -0.8363 -8.9954 0.5444 35 1 -4.5699 -11.5819 -0.5761 36 1 -0.6636 -7.4870 -1.8205 37 1 -2.2190 -6.6265 -2.0444 38 1 -0.5312 -2.8723 -0.9943 39 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094767335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:30 Heat of formation + Delta-G solvation = 51.367089 kcal Electronic energy + Delta-G solvation = -25948.184772 eV Core-core repulsion = 22020.026437 eV Total energy + Delta-G solvation = -3928.158335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.22834 -41.75829 -40.32134 -38.94522 -37.68321 -35.36011 -34.20058 -33.22559 -31.64598 -29.21969 -28.68113 -27.90034 -26.62195 -25.47536 -24.84583 -22.58655 -22.15612 -21.87465 -20.49419 -19.77954 -18.79002 -18.06617 -17.75363 -17.58593 -17.07061 -16.98234 -16.63679 -16.41540 -15.88242 -15.75624 -15.59080 -15.19925 -14.84791 -14.66077 -14.53367 -14.06331 -13.65336 -13.58217 -13.42149 -13.30848 -13.00994 -12.84021 -12.83304 -12.58280 -12.30551 -12.00761 -11.92659 -11.59919 -11.50578 -11.25590 -11.14467 -11.09655 -10.87557 -10.71414 -10.21491 -9.59571 -8.95031 -7.92853 -5.27673 -0.90514 -0.02002 0.32223 0.56481 1.42697 1.46546 1.55145 1.57307 1.73657 1.97649 2.09560 2.48284 2.73738 3.25126 3.29908 3.45033 3.46665 3.66392 3.78749 3.79354 3.94082 4.00204 4.24772 4.39987 4.50452 4.58310 4.62734 4.74082 4.78355 4.84899 4.91910 5.19212 5.21586 5.25233 5.47117 5.83115 5.88699 6.18164 6.23056 6.54007 6.87772 6.93868 7.20617 7.56853 8.52336 9.24439 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.001975 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.681701 B =14176.038974 C =14430.477334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.986 3.014 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.236 4.236 8 H 0.086 0.914 9 N -0.636 5.636 10 C 0.113 3.887 11 C 0.136 3.864 12 N -0.604 5.604 13 C 0.099 3.901 14 C 0.148 3.852 15 H 0.116 0.884 16 N -0.687 5.687 17 C 0.612 3.388 18 O -0.548 6.548 19 C -0.045 4.045 20 C -0.236 4.236 21 S 0.557 5.443 22 N -0.332 5.332 23 N -0.229 5.229 24 C -0.154 4.154 25 C 0.505 3.495 26 O -0.571 6.571 27 C 0.148 3.852 28 H 0.249 0.751 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.423 0.577 35 H 0.228 0.772 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.021 0.979 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -33.353 4.996 34.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.813 3.187 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.363 5.363 10 C -0.013 4.013 11 C 0.033 3.967 12 N -0.338 5.338 13 C -0.023 4.023 14 C 0.042 3.958 15 H 0.134 0.866 16 N -0.340 5.340 17 C 0.394 3.606 18 O -0.425 6.425 19 C -0.193 4.193 20 C -0.393 4.393 21 S 0.693 5.307 22 N -0.312 5.312 23 N -0.098 5.098 24 C -0.195 4.195 25 C 0.293 3.707 26 O -0.450 6.450 27 C 0.021 3.979 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.262 0.738 35 H 0.245 0.755 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.039 0.961 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.223 -33.632 4.871 34.964 hybrid contribution 0.005 2.619 -0.843 2.751 sum -8.218 -31.013 4.028 32.335 Atomic orbital electron populations 1.70043 1.06664 1.25702 1.57905 1.25760 0.96663 1.01259 1.02725 0.84978 0.77855 0.78550 0.77320 1.21810 1.21646 1.18612 1.19443 0.90870 0.83111 1.43047 0.89577 1.46152 1.03564 1.00654 1.85883 1.23003 0.96748 0.84071 0.97476 1.23401 0.91672 0.82433 0.99236 1.48447 1.57921 1.19107 1.08286 1.22523 0.98333 0.86665 0.94821 1.21690 1.01371 0.79696 0.93000 0.86618 1.45587 1.17157 1.05681 1.65536 1.16769 0.83371 0.83358 0.77103 1.90872 1.29669 1.75521 1.46425 1.22475 0.91388 0.97407 1.07994 1.29300 1.07319 0.98696 1.03958 1.81333 1.01007 1.09110 1.39277 1.78357 1.21694 1.06852 1.24335 1.71557 1.23717 1.00686 1.13879 1.22762 1.02412 0.94421 0.99909 1.21430 0.78452 0.88431 0.82374 1.90765 1.56899 1.50067 1.47256 1.22585 0.87357 0.90690 0.97229 0.94235 0.91207 0.95832 0.84378 0.86983 0.87493 0.73781 0.75514 0.86035 0.87797 0.96092 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 11.39 21.65 0.25 -60.80 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.99 47.81 29.55 68.60 2.03 49.84 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.24 -14.09 10.70 84.03 0.90 -13.19 16 8 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 9 N -0.64 -35.31 3.70 -716.79 -2.65 -37.96 16 10 C 0.11 4.92 8.43 86.48 0.73 5.65 16 11 C 0.14 5.09 4.81 46.74 0.22 5.31 16 12 N -0.60 -17.71 3.16 -799.78 -2.52 -20.23 16 13 C 0.10 1.63 7.07 86.83 0.61 2.25 16 14 C 0.15 2.49 3.48 46.05 0.16 2.65 16 15 H 0.12 2.10 7.63 -2.39 -0.02 2.08 16 16 N -0.69 -9.47 5.17 -440.75 -2.28 -11.75 16 17 C 0.61 10.45 7.81 86.67 0.68 11.12 16 18 O -0.55 -12.56 16.49 -4.05 -0.07 -12.63 16 19 C -0.04 -0.62 6.87 41.36 0.28 -0.34 16 20 C -0.24 -1.89 11.21 67.76 0.76 -1.13 16 21 S 0.56 2.78 23.38 -56.49 -1.32 1.46 16 22 N -0.33 -4.49 12.49 37.02 0.46 -4.03 16 23 N -0.23 -3.51 11.24 -50.35 -0.57 -4.08 16 24 C -0.15 -3.48 6.59 30.59 0.20 -3.28 16 25 C 0.50 17.19 7.42 87.90 0.65 17.85 16 26 O -0.57 -26.84 14.61 -3.03 -0.04 -26.88 16 27 C 0.15 7.72 6.90 86.43 0.60 8.31 16 28 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.02 1.12 7.22 -2.38 -0.02 1.10 16 31 H 0.14 4.34 8.14 -2.39 -0.02 4.33 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.20 7.78 -2.39 -0.02 1.18 16 34 H 0.42 4.36 7.98 -92.71 -0.74 3.62 16 35 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.12 2.36 8.08 -2.39 -0.02 2.34 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.02 1.25 5.75 -2.39 -0.01 1.24 16 39 H 0.04 2.43 7.17 -2.38 -0.02 2.42 16 Total: -1.00 -88.24 347.64 -0.07 -88.31 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.38 Total: 7.37 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 6.26 Total: 31.37 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -7.31 Total: -138.85 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.11 Total: -39.51 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.32 Total: 1.46 kcal Total: -88.24 -0.07 -88.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094767335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.680 kcal (2) G-P(sol) polarization free energy of solvation -88.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds