Wall clock time and date at job start Tue Mar 31 2020 19:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48504 * 109.47386 * 239.99582 * 3 2 1 5 5 H 1.48503 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47304 * 119.99423 * 3 2 1 7 7 C 1.38810 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49216 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11600 * 155.35297 * 10 9 7 12 12 N 1.46500 * 113.74230 * 137.95076 * 11 10 9 13 13 C 1.46766 * 124.34898 * 121.94689 * 12 11 10 14 14 C 1.54480 * 105.47221 * 162.98294 * 13 12 11 15 15 H 1.08999 * 110.97225 * 143.53690 * 14 13 12 16 16 N 1.46504 * 111.00201 * 267.28493 * 14 13 12 17 17 C 1.34771 * 119.99813 * 198.85152 * 16 14 13 18 18 O 1.21606 * 120.00426 * 359.97438 * 17 16 14 19 19 C 1.47447 * 119.99894 * 179.97438 * 17 16 14 20 20 C 1.37990 * 124.15405 * 179.72510 * 19 17 16 21 21 S 1.72106 * 104.03074 * 179.90406 * 20 19 17 22 22 N 1.56399 * 96.15304 * 0.32524 * 21 20 19 23 23 N 1.27419 * 109.88116 * 359.80151 * 22 21 20 24 24 C 1.54627 * 101.76536 * 25.41761 * 14 13 12 25 25 C 1.34413 * 124.34944 * 301.94874 * 12 11 10 26 26 O 1.21279 * 124.94390 * 0.66828 * 25 12 11 27 27 C 1.47808 * 134.45475 * 359.85356 * 9 7 2 28 28 H 0.97003 * 119.99665 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.76989 * 41.05068 * 10 9 7 30 30 H 1.08996 * 113.76637 * 269.65084 * 10 9 7 31 31 H 1.09003 * 113.74151 * 269.15129 * 11 10 9 32 32 H 1.09003 * 110.24225 * 43.98865 * 13 12 11 33 33 H 1.08996 * 110.32077 * 282.02069 * 13 12 11 34 34 H 0.96997 * 120.00016 * 18.85411 * 16 14 13 35 35 H 1.07996 * 127.98523 * 0.02562 * 20 19 17 36 36 H 1.09004 * 110.48832 * 216.52571 * 24 14 13 37 37 H 1.09002 * 110.59848 * 93.93277 * 24 14 13 38 38 H 1.09000 * 113.76527 * 90.38907 * 27 9 7 39 39 H 1.09002 * 113.84090 * 318.92640 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6411 12 7 -0.3336 -5.2612 0.0983 13 6 -0.7629 -6.4125 0.9010 14 6 -1.7848 -7.1687 0.0233 15 1 -1.6938 -8.2463 0.1591 16 7 -3.1512 -6.7212 0.3046 17 6 -4.1990 -7.4894 -0.0536 18 8 -4.0104 -8.5537 -0.6107 19 6 -5.5742 -7.0393 0.2300 20 6 -6.7071 -7.7531 -0.1031 21 16 -8.0014 -6.7683 0.4601 22 7 -7.1040 -5.6168 1.0212 23 7 -5.8748 -5.8942 0.8323 24 6 -1.3479 -6.7514 -1.4000 25 6 -0.6444 -5.4272 -1.1989 26 8 -0.3930 -4.6333 -2.0805 27 6 -0.1058 -2.7570 0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6573 30 1 1.8324 -4.2355 -0.9958 31 1 0.3582 -4.0631 1.7309 32 1 -1.2352 -6.0741 1.8232 33 1 0.0882 -7.0547 1.1271 34 1 -3.3017 -5.8720 0.7485 35 1 -6.7677 -8.7098 -0.6004 36 1 -2.2177 -6.6271 -2.0451 37 1 -0.6630 -7.4869 -1.8220 38 1 -0.5313 -2.8721 -0.9941 39 1 -0.7189 -2.1398 0.6596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094767336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:36 Heat of formation + Delta-G solvation = 81.593706 kcal Electronic energy + Delta-G solvation = -26409.686513 eV Core-core repulsion = 22482.838902 eV Total energy + Delta-G solvation = -3926.847611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51721 -40.63637 -39.31112 -37.24791 -36.41415 -34.06872 -32.63457 -32.09452 -30.42231 -27.79097 -27.48143 -27.00261 -24.72386 -24.40523 -23.36560 -21.67288 -21.13957 -20.45267 -19.68856 -18.28146 -17.34534 -16.95543 -16.71965 -16.40212 -16.21904 -15.98043 -15.26223 -14.95093 -14.88734 -14.49475 -14.09969 -13.94582 -13.49684 -13.42373 -13.05260 -12.96931 -12.54292 -12.45623 -11.97414 -11.82365 -11.73813 -11.36958 -11.34021 -10.81509 -10.80747 -10.68444 -10.56240 -10.51647 -10.34818 -10.17515 -9.98317 -9.69238 -9.46267 -9.18749 -8.64079 -8.17797 -6.79068 -5.69478 -3.01507 -0.36296 0.48823 1.03629 1.11787 2.64774 2.74195 2.95262 3.25626 3.41326 3.44565 3.48877 3.50133 4.18193 4.26136 4.39392 4.47287 4.53729 4.72006 4.88724 5.01211 5.25438 5.36687 5.40481 5.50410 5.55425 5.63348 5.73776 5.84259 6.06620 6.31110 6.54095 6.60280 6.88774 6.91796 7.20405 7.31522 7.50690 7.61005 7.64820 7.68917 8.03785 8.57091 9.10942 9.77286 10.66441 11.47637 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002705 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.482209 B =10347.154686 C =11695.599985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.099 3.901 12 N -0.609 5.609 13 C 0.096 3.904 14 C 0.134 3.866 15 H 0.119 0.881 16 N -0.700 5.700 17 C 0.610 3.390 18 O -0.523 6.523 19 C -0.024 4.024 20 C -0.236 4.236 21 S 0.462 5.538 22 N -0.284 5.284 23 N -0.206 5.206 24 C -0.167 4.167 25 C 0.512 3.488 26 O -0.508 6.508 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.209 0.791 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.652 -22.040 3.856 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.004 4.004 12 N -0.344 5.344 13 C -0.029 4.029 14 C 0.029 3.971 15 H 0.137 0.863 16 N -0.352 5.352 17 C 0.392 3.608 18 O -0.398 6.398 19 C -0.172 4.172 20 C -0.394 4.394 21 S 0.598 5.402 22 N -0.264 5.264 23 N -0.077 5.077 24 C -0.208 4.208 25 C 0.298 3.702 26 O -0.383 6.383 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.226 0.774 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.362 -20.529 3.787 26.523 hybrid contribution 1.480 0.329 -0.442 1.579 sum -14.882 -20.200 3.346 25.312 Atomic orbital electron populations 1.69816 1.05003 1.25395 1.56348 1.24794 0.95679 0.97515 1.02425 0.86186 0.78447 0.83147 0.77877 1.21208 1.21557 1.21098 1.18934 0.90148 0.81750 1.44076 0.90275 1.45692 1.02422 0.99132 1.85872 1.22916 0.94179 0.86900 0.97542 1.24066 0.94266 0.83720 0.98342 1.48536 1.58947 1.18892 1.08069 1.22331 0.97032 0.88555 0.94973 1.21955 0.80191 1.00472 0.94520 0.86348 1.45878 1.05019 1.24033 1.60234 1.16591 0.81836 0.83808 0.78601 1.90850 1.84835 1.22138 1.42003 1.22642 0.97409 0.92689 1.04440 1.28900 0.96341 1.08241 1.05890 1.81614 1.16887 1.04426 1.37243 1.78710 1.01528 1.23265 1.22923 1.71566 1.08476 1.14911 1.12743 1.22834 1.02717 0.97393 0.97873 1.20661 0.79145 0.87722 0.82640 1.90793 1.54366 1.47868 1.45243 1.22762 0.88295 0.87255 0.98900 0.93610 0.93990 0.94233 0.87633 0.89595 0.89358 0.74678 0.77368 0.88055 0.86890 0.92768 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.40 11.39 55.49 0.63 -27.77 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.50 10.70 -15.06 -0.16 -6.66 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -16.44 3.70 -177.89 -0.66 -17.10 16 10 C 0.11 2.44 8.43 -2.96 -0.03 2.42 16 11 C 0.10 1.87 4.81 -70.15 -0.34 1.53 16 12 N -0.61 -9.16 3.15 -166.65 -0.53 -9.69 16 13 C 0.10 0.91 6.96 -3.12 -0.02 0.89 16 14 C 0.13 1.24 3.42 -66.30 -0.23 1.01 16 15 H 0.12 0.91 7.72 -51.93 -0.40 0.51 16 16 N -0.70 -7.02 5.16 -53.29 -0.27 -7.30 16 17 C 0.61 6.56 7.81 -12.51 -0.10 6.46 16 18 O -0.52 -6.49 16.54 5.27 0.09 -6.40 16 19 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 20 C -0.24 -1.58 11.21 30.64 0.34 -1.24 16 21 S 0.46 2.63 23.38 -107.50 -2.51 0.12 16 22 N -0.28 -2.90 12.49 60.35 0.75 -2.15 16 23 N -0.21 -2.32 11.24 32.74 0.37 -1.96 16 24 C -0.17 -1.95 6.58 -26.74 -0.18 -2.13 16 25 C 0.51 8.61 7.41 -10.86 -0.08 8.53 16 26 O -0.51 -11.39 14.61 5.56 0.08 -11.30 16 27 C 0.15 3.86 6.90 -2.85 -0.02 3.84 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.92 7.21 -51.93 -0.37 0.55 16 31 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.09 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.42 4.28 8.16 -40.82 -0.33 3.94 16 35 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.51 5.76 -51.93 -0.30 1.21 16 39 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 LS Contribution 348.05 15.07 5.24 5.24 Total: -1.00 -38.25 348.05 -7.58 -45.83 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.28 Total: 1.05 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -1.47 Total: 13.53 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.29 Total: -65.96 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.17 Total: -17.70 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.51 Total: 0.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.25 -7.58 -45.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094767336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.427 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds