Wall clock time and date at job start Tue Mar 31 2020 19:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48504 * 109.47386 * 239.99582 * 3 2 1 5 5 H 1.48503 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47304 * 119.99423 * 3 2 1 7 7 C 1.38810 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49216 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11600 * 155.35297 * 10 9 7 12 12 N 1.46500 * 113.74230 * 137.95076 * 11 10 9 13 13 C 1.46766 * 124.34898 * 121.94689 * 12 11 10 14 14 C 1.54480 * 105.47221 * 162.98294 * 13 12 11 15 15 H 1.08999 * 110.97225 * 143.53690 * 14 13 12 16 16 N 1.46504 * 111.00201 * 267.28493 * 14 13 12 17 17 C 1.34771 * 119.99813 * 198.85152 * 16 14 13 18 18 O 1.21606 * 120.00426 * 359.97438 * 17 16 14 19 19 C 1.47447 * 119.99894 * 179.97438 * 17 16 14 20 20 C 1.37990 * 124.15405 * 179.72510 * 19 17 16 21 21 S 1.72106 * 104.03074 * 179.90406 * 20 19 17 22 22 N 1.56399 * 96.15304 * 0.32524 * 21 20 19 23 23 N 1.27419 * 109.88116 * 359.80151 * 22 21 20 24 24 C 1.54627 * 101.76536 * 25.41761 * 14 13 12 25 25 C 1.34413 * 124.34944 * 301.94874 * 12 11 10 26 26 O 1.21279 * 124.94390 * 0.66828 * 25 12 11 27 27 C 1.47808 * 134.45475 * 359.85356 * 9 7 2 28 28 H 0.97003 * 119.99665 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.76989 * 41.05068 * 10 9 7 30 30 H 1.08996 * 113.76637 * 269.65084 * 10 9 7 31 31 H 1.09003 * 113.74151 * 269.15129 * 11 10 9 32 32 H 1.09003 * 110.24225 * 43.98865 * 13 12 11 33 33 H 1.08996 * 110.32077 * 282.02069 * 13 12 11 34 34 H 0.96997 * 120.00016 * 18.85411 * 16 14 13 35 35 H 1.07996 * 127.98523 * 0.02562 * 20 19 17 36 36 H 1.09004 * 110.48832 * 216.52571 * 24 14 13 37 37 H 1.09002 * 110.59848 * 93.93277 * 24 14 13 38 38 H 1.09000 * 113.76527 * 90.38907 * 27 9 7 39 39 H 1.09002 * 113.84090 * 318.92640 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3465 -4.0826 0.6411 12 7 -0.3336 -5.2612 0.0983 13 6 -0.7629 -6.4125 0.9010 14 6 -1.7848 -7.1687 0.0233 15 1 -1.6938 -8.2463 0.1591 16 7 -3.1512 -6.7212 0.3046 17 6 -4.1990 -7.4894 -0.0536 18 8 -4.0104 -8.5537 -0.6107 19 6 -5.5742 -7.0393 0.2300 20 6 -6.7071 -7.7531 -0.1031 21 16 -8.0014 -6.7683 0.4601 22 7 -7.1040 -5.6168 1.0212 23 7 -5.8748 -5.8942 0.8323 24 6 -1.3479 -6.7514 -1.4000 25 6 -0.6444 -5.4272 -1.1989 26 8 -0.3930 -4.6333 -2.0805 27 6 -0.1058 -2.7570 0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 2.5619 -4.0321 0.6573 30 1 1.8324 -4.2355 -0.9958 31 1 0.3582 -4.0631 1.7309 32 1 -1.2352 -6.0741 1.8232 33 1 0.0882 -7.0547 1.1271 34 1 -3.3017 -5.8720 0.7485 35 1 -6.7677 -8.7098 -0.6004 36 1 -2.2177 -6.6271 -2.0451 37 1 -0.6630 -7.4869 -1.8220 38 1 -0.5313 -2.8721 -0.9941 39 1 -0.7189 -2.1398 0.6596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094767336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:35 Heat of formation + Delta-G solvation = 50.375814 kcal Electronic energy + Delta-G solvation = -26411.040222 eV Core-core repulsion = 22482.838902 eV Total energy + Delta-G solvation = -3928.201320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25748 -41.75335 -40.28137 -38.92213 -37.64533 -35.20508 -34.17108 -33.23024 -31.66988 -29.21349 -28.64930 -27.95740 -26.61823 -25.44464 -24.94092 -22.53234 -22.09947 -21.85166 -20.47507 -19.69687 -18.79543 -18.14528 -17.85943 -17.46916 -17.10312 -16.98468 -16.68182 -16.23757 -15.96904 -15.70883 -15.59721 -15.15793 -14.95180 -14.61463 -14.19657 -14.09427 -13.65614 -13.48151 -13.39474 -13.22108 -13.03581 -12.83119 -12.78252 -12.65810 -12.45913 -12.04401 -11.92054 -11.56620 -11.49014 -11.25155 -11.16169 -11.05200 -10.90597 -10.67187 -10.21875 -9.56811 -8.94822 -7.92868 -5.27704 -0.92411 -0.02473 0.30857 0.54687 1.41874 1.47247 1.53250 1.61816 1.91845 1.96602 2.04561 2.48145 2.74323 3.24977 3.32437 3.44051 3.47378 3.64602 3.79612 3.82094 3.87456 4.21574 4.25389 4.37467 4.53047 4.63513 4.67366 4.75757 4.79011 4.86533 4.93067 5.20602 5.21496 5.29386 5.46717 5.85026 5.88896 6.16009 6.27574 6.51067 6.87226 6.90591 7.25489 7.56977 8.52613 9.24069 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002705 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.482209 B =10347.154686 C =11695.599985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.985 3.015 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.239 4.239 8 H 0.086 0.914 9 N -0.635 5.635 10 C 0.114 3.886 11 C 0.137 3.863 12 N -0.607 5.607 13 C 0.095 3.905 14 C 0.144 3.856 15 H 0.149 0.851 16 N -0.701 5.701 17 C 0.613 3.387 18 O -0.542 6.542 19 C -0.050 4.050 20 C -0.231 4.231 21 S 0.556 5.444 22 N -0.337 5.337 23 N -0.238 5.238 24 C -0.154 4.154 25 C 0.499 3.501 26 O -0.577 6.577 27 C 0.149 3.851 28 H 0.248 0.752 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.018 0.982 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 -24.713 5.243 29.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.367 4.367 8 H 0.104 0.896 9 N -0.362 5.362 10 C -0.013 4.013 11 C 0.034 3.966 12 N -0.340 5.340 13 C -0.027 4.027 14 C 0.040 3.960 15 H 0.167 0.833 16 N -0.352 5.352 17 C 0.395 3.605 18 O -0.418 6.418 19 C -0.198 4.198 20 C -0.388 4.388 21 S 0.691 5.309 22 N -0.318 5.318 23 N -0.107 5.107 24 C -0.195 4.195 25 C 0.288 3.712 26 O -0.456 6.456 27 C 0.023 3.977 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.251 0.749 35 H 0.251 0.749 36 H 0.109 0.891 37 H 0.158 0.842 38 H 0.036 0.964 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.548 -23.270 5.225 29.028 hybrid contribution 1.394 1.049 -0.941 1.982 sum -15.154 -22.221 4.284 27.235 Atomic orbital electron populations 1.70045 1.06684 1.25708 1.57825 1.25744 0.96613 1.01231 1.02662 0.85064 0.77086 0.78224 0.78401 1.20725 1.21942 1.19290 1.19410 0.90866 0.83180 1.43243 0.89610 1.46140 1.03520 1.00665 1.85894 1.22999 0.96782 0.84014 0.97459 1.23347 0.91669 0.82546 0.99079 1.48489 1.57927 1.19179 1.08445 1.22738 0.98549 0.86793 0.94588 1.22069 0.79656 1.01906 0.92401 0.83316 1.45968 1.05401 1.23889 1.59960 1.16695 0.82282 0.83494 0.78039 1.90830 1.85227 1.22824 1.42958 1.22653 0.97818 0.93345 1.05984 1.29316 0.96023 1.08884 1.04560 1.81225 1.14058 1.01466 1.34152 1.78357 1.01946 1.26276 1.25173 1.71588 1.09345 1.15903 1.13892 1.22806 1.02221 0.94731 0.99719 1.21607 0.78474 0.88729 0.82362 1.90758 1.57027 1.50475 1.47356 1.22548 0.87332 0.90822 0.97016 0.94306 0.91219 0.95852 0.84537 0.87649 0.85539 0.74943 0.74895 0.89055 0.84197 0.96408 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.45 11.39 21.65 0.25 -61.20 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.99 48.04 29.55 68.60 2.03 50.07 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.24 -14.30 10.70 84.03 0.90 -13.41 16 8 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 9 N -0.64 -35.44 3.70 -716.73 -2.65 -38.10 16 10 C 0.11 4.94 8.43 86.49 0.73 5.67 16 11 C 0.14 5.12 4.81 46.74 0.22 5.35 16 12 N -0.61 -17.46 3.15 -799.74 -2.52 -19.98 16 13 C 0.10 1.47 6.96 86.83 0.60 2.07 16 14 C 0.14 2.25 3.42 46.05 0.16 2.40 16 15 H 0.15 1.59 7.72 -2.39 -0.02 1.58 16 16 N -0.70 -13.01 5.16 -440.77 -2.27 -15.29 16 17 C 0.61 12.33 7.81 86.67 0.68 13.00 16 18 O -0.54 -12.32 16.54 -4.05 -0.07 -12.39 16 19 C -0.05 -0.93 6.87 41.36 0.28 -0.65 16 20 C -0.23 -2.60 11.21 67.76 0.76 -1.84 16 21 S 0.56 5.20 23.38 -56.49 -1.32 3.88 16 22 N -0.34 -6.74 12.49 37.02 0.46 -6.28 16 23 N -0.24 -5.34 11.24 -50.34 -0.57 -5.90 16 24 C -0.15 -3.36 6.58 30.59 0.20 -3.16 16 25 C 0.50 16.89 7.41 87.90 0.65 17.54 16 26 O -0.58 -27.30 14.61 -3.03 -0.04 -27.35 16 27 C 0.15 7.85 6.90 86.44 0.60 8.44 16 28 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.02 1.11 7.21 -2.39 -0.02 1.09 16 31 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 32 H 0.11 1.33 8.04 -2.39 -0.02 1.31 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.41 8.24 8.16 -92.71 -0.76 7.48 16 35 H 0.23 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.09 2.25 8.09 -2.38 -0.02 2.23 16 37 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.02 1.08 5.76 -2.39 -0.01 1.07 16 39 H 0.04 2.32 7.16 -2.39 -0.02 2.30 16 Total: -1.00 -90.32 348.05 -0.09 -90.42 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.36 Total: 10.44 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 6.25 Total: 31.68 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -7.31 Total: -146.75 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.11 Total: -39.74 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.32 Total: 3.88 kcal Total: -90.32 -0.09 -90.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094767336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.794 kcal (2) G-P(sol) polarization free energy of solvation -90.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds