Wall clock time and date at job start Tue Mar 31 2020 19:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08995 * 110.30704 * 35.72150 * 10 9 7 12 12 C 1.54394 * 110.33978 * 273.54622 * 10 9 7 13 13 N 1.48150 * 104.61600 * 264.99525 * 12 10 9 14 14 C 1.34773 * 127.83865 * 140.39860 * 13 12 10 15 15 O 1.21278 * 120.00119 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99834 * 0.02562 * 14 13 12 17 17 H 1.09000 * 110.50592 * 319.30247 * 16 14 13 18 18 C 1.54094 * 110.56330 * 82.04379 * 16 14 13 19 19 O 1.45705 * 104.00686 * 118.57290 * 18 16 14 20 20 C 1.33763 * 109.47648 * 359.97438 * 19 18 16 21 21 O 1.21518 * 123.06820 * 180.02562 * 20 19 18 22 22 N 1.34322 * 113.90424 * 0.08389 * 20 19 18 23 23 C 1.48149 * 104.32314 * 320.41695 * 13 12 10 24 24 C 1.54289 * 110.33991 * 158.01001 * 10 9 7 25 25 H 1.08989 * 110.34518 * 0.02562 * 24 10 9 26 26 C 1.53004 * 110.33850 * 237.73899 * 24 10 9 27 27 F 1.39897 * 109.46826 * 60.00108 * 26 24 10 28 28 F 1.39897 * 109.46812 * 180.02562 * 26 24 10 29 29 F 1.39896 * 109.47110 * 299.99933 * 26 24 10 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08997 * 110.40838 * 23.77847 * 12 10 9 33 33 H 1.09000 * 110.40466 * 146.09722 * 12 10 9 34 34 H 1.09000 * 110.51859 * 237.20177 * 18 16 14 35 35 H 1.08999 * 110.52058 * 359.79887 * 18 16 14 36 36 H 0.97008 * 125.73207 * 179.97438 * 22 20 19 37 37 H 1.09000 * 110.40592 * 158.36951 * 23 13 12 38 38 H 1.08998 * 110.40658 * 280.80093 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9658 -3.5726 0.5838 12 6 2.4038 -4.0692 -1.4605 13 7 1.3094 -4.9843 -1.8601 14 6 0.6911 -5.0615 -3.0552 15 8 -0.1956 -5.8707 -3.2280 16 6 1.1014 -4.1422 -4.1766 17 1 1.2886 -3.1375 -3.7976 18 6 2.3487 -4.6901 -4.8967 19 8 1.8965 -4.9148 -6.2635 20 6 0.6084 -4.5704 -6.3694 21 8 -0.0187 -4.6593 -7.4065 22 7 0.0706 -4.1159 -5.2255 23 6 1.0486 -5.7951 -0.6479 24 6 1.1644 -4.7947 0.5223 25 1 0.1805 -4.4099 0.7900 26 6 1.8226 -5.4637 1.7307 27 9 2.0109 -4.5164 2.7428 28 9 0.9984 -6.4917 2.2009 29 9 3.0604 -5.9949 1.3529 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 2.4241 -3.1944 -2.1105 33 1 3.3632 -4.5857 -1.4895 34 1 3.1546 -3.9566 -4.8766 35 1 2.6731 -5.6255 -4.4407 36 1 -0.8459 -3.8202 -5.1086 37 1 0.0466 -6.2225 -0.6849 38 1 1.7954 -6.5830 -0.5498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099244694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:44 Heat of formation + Delta-G solvation = -228.120492 kcal Electronic energy + Delta-G solvation = -30667.631718 eV Core-core repulsion = 25710.451530 eV Total energy + Delta-G solvation = -4957.180189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.04567 -47.55674 -47.45833 -41.90615 -39.91005 -37.90562 -37.18127 -34.78580 -34.30294 -32.44035 -30.91686 -29.85028 -27.87252 -26.28587 -24.65678 -24.09821 -22.51857 -22.42312 -20.59798 -19.93904 -18.46632 -18.30628 -18.27874 -18.15143 -17.63247 -17.02559 -16.73797 -16.50391 -15.63370 -15.33528 -15.00050 -14.54656 -14.50633 -14.40009 -14.36658 -14.04390 -13.95019 -13.83668 -13.80739 -13.62045 -13.53193 -13.47687 -13.44951 -12.50677 -12.42027 -12.09112 -11.87025 -11.53932 -11.15257 -11.06756 -11.01858 -11.00797 -10.82332 -10.44735 -10.28712 -10.02677 -9.46572 -9.33961 -8.86503 -7.35975 -6.07593 -3.41340 2.18324 2.34307 2.57242 2.69896 2.90566 3.25282 3.31734 3.34789 3.38418 3.79394 3.83010 3.90860 4.04887 4.15161 4.34860 4.50931 4.66698 4.70836 4.81835 5.03251 5.05924 5.12255 5.18510 5.25283 5.36045 5.50482 5.70084 5.78066 5.85117 5.97194 6.25992 6.61684 7.04371 7.32197 7.42122 7.84896 7.96925 8.06969 9.20546 9.67973 10.02881 11.13459 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.005043 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.129456 B = 5550.810544 C = 8170.109344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.001 4.001 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.077 0.923 9 N -0.710 5.710 10 C 0.179 3.821 11 H 0.080 0.920 12 C 0.065 3.935 13 N -0.606 5.606 14 C 0.530 3.470 15 O -0.528 6.528 16 C 0.079 3.921 17 H 0.137 0.863 18 C 0.057 3.943 19 O -0.324 6.324 20 C 0.652 3.348 21 O -0.521 6.521 22 N -0.708 5.708 23 C 0.118 3.882 24 C -0.166 4.166 25 H 0.130 0.870 26 C 0.464 3.536 27 F -0.172 7.172 28 F -0.186 7.186 29 F -0.183 7.183 30 H 0.259 0.741 31 H 0.387 0.613 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.442 0.558 37 H 0.095 0.905 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -10.136 -0.678 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.389 4.389 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.065 3.935 11 H 0.097 0.903 12 C -0.061 4.061 13 N -0.340 5.340 14 C 0.316 3.684 15 O -0.404 6.404 16 C -0.031 4.031 17 H 0.154 0.846 18 C -0.018 4.018 19 O -0.234 6.234 20 C 0.404 3.596 21 O -0.406 6.406 22 N -0.380 5.380 23 C -0.006 4.006 24 C -0.187 4.187 25 H 0.148 0.852 26 C 0.410 3.590 27 F -0.153 7.153 28 F -0.168 7.168 29 F -0.165 7.165 30 H 0.069 0.931 31 H 0.222 0.778 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.286 0.714 37 H 0.113 0.887 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.940 -10.601 -1.609 12.257 hybrid contribution -0.230 1.101 0.761 1.358 sum 5.710 -9.499 -0.848 11.116 Atomic orbital electron populations 1.69660 1.05259 1.26234 1.55842 1.24791 0.95485 0.97974 1.01612 0.86121 0.78896 0.83690 0.77413 1.20271 1.21662 1.21606 1.19224 0.91187 0.83439 1.45037 0.90555 1.42452 1.05780 0.98989 1.87808 1.21029 0.94308 0.85414 0.92700 0.90267 1.23795 0.88617 0.93279 1.00413 1.48776 1.37199 1.37779 1.10211 1.20047 0.82056 0.84156 0.82122 1.90759 1.30398 1.37804 1.81461 1.22288 0.89154 1.02393 0.89258 0.84569 1.24240 0.95517 1.03988 0.78099 1.87275 1.25326 1.80026 1.30743 1.18473 0.80539 0.76144 0.84396 1.91080 1.60936 1.58838 1.29708 1.45729 1.15246 1.68853 1.08207 1.22172 1.03740 0.92538 0.82116 1.23863 1.03899 0.98759 0.92184 0.85207 1.20256 0.76732 0.76739 0.85301 1.93243 1.95204 1.64200 1.62664 1.93179 1.72292 1.61198 1.90121 1.93155 1.44954 1.87187 1.91197 0.93105 0.77762 0.88465 0.90769 0.85941 0.87330 0.71393 0.88663 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.68 13.06 55.49 0.72 -23.96 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.91 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -5.91 9.97 -15.06 -0.15 -6.06 16 8 H 0.08 1.68 7.83 -52.49 -0.41 1.26 16 9 N -0.71 -14.04 5.14 -52.06 -0.27 -14.31 16 10 C 0.18 2.60 2.99 -66.52 -0.20 2.41 16 11 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 12 C 0.06 0.75 6.63 -2.40 -0.02 0.73 16 13 N -0.61 -7.27 3.32 -169.30 -0.56 -7.83 16 14 C 0.53 6.98 7.03 -10.99 -0.08 6.91 16 15 O -0.53 -8.79 16.84 5.56 0.09 -8.69 16 16 C 0.08 0.86 3.56 -68.19 -0.24 0.62 16 17 H 0.14 1.36 7.06 -51.93 -0.37 0.99 16 18 C 0.06 0.50 7.87 37.73 0.30 0.80 16 19 O -0.32 -4.19 11.09 -37.81 -0.42 -4.61 16 20 C 0.65 9.74 9.16 53.85 0.49 10.23 16 21 O -0.52 -9.63 18.04 -19.12 -0.35 -9.97 16 22 N -0.71 -8.95 5.66 -59.27 -0.34 -9.29 16 23 C 0.12 1.35 6.38 -2.41 -0.02 1.34 16 24 C -0.17 -2.11 2.84 -89.22 -0.25 -2.36 16 25 H 0.13 1.78 7.64 -51.94 -0.40 1.38 16 26 C 0.46 5.85 2.53 37.16 0.09 5.95 16 27 F -0.17 -2.55 16.93 2.25 0.04 -2.52 16 28 F -0.19 -2.31 17.17 2.25 0.04 -2.28 16 29 F -0.18 -2.17 16.05 2.25 0.04 -2.14 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.39 8.51 7.50 -40.82 -0.31 8.20 16 32 H 0.10 1.16 6.69 -51.93 -0.35 0.82 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.82 7.72 -51.93 -0.40 0.42 16 36 H 0.44 5.25 8.96 -40.82 -0.37 4.88 16 37 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 38 H 0.08 0.83 7.21 -51.93 -0.37 0.46 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -31.07 339.09 -4.82 -35.89 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.74 Total: 9.34 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: -0.17 Total: 20.44 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.44 Total: -55.39 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.67 Total: -23.27 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.11 Total: -6.93 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.07 -4.82 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099244694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.235 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds