Wall clock time and date at job start Tue Mar 31 2020 19:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08995 * 110.30704 * 35.72150 * 10 9 7 12 12 C 1.54394 * 110.33978 * 273.54622 * 10 9 7 13 13 N 1.48150 * 104.61600 * 264.99525 * 12 10 9 14 14 C 1.34773 * 127.83865 * 140.39860 * 13 12 10 15 15 O 1.21278 * 120.00119 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99834 * 0.02562 * 14 13 12 17 17 H 1.09000 * 110.50592 * 319.30247 * 16 14 13 18 18 C 1.54094 * 110.56330 * 82.04379 * 16 14 13 19 19 O 1.45705 * 104.00686 * 118.57290 * 18 16 14 20 20 C 1.33763 * 109.47648 * 359.97438 * 19 18 16 21 21 O 1.21518 * 123.06820 * 180.02562 * 20 19 18 22 22 N 1.34322 * 113.90424 * 0.08389 * 20 19 18 23 23 C 1.48149 * 104.32314 * 320.41695 * 13 12 10 24 24 C 1.54289 * 110.33991 * 158.01001 * 10 9 7 25 25 H 1.08989 * 110.34518 * 0.02562 * 24 10 9 26 26 C 1.53004 * 110.33850 * 237.73899 * 24 10 9 27 27 F 1.39897 * 109.46826 * 60.00108 * 26 24 10 28 28 F 1.39897 * 109.46812 * 180.02562 * 26 24 10 29 29 F 1.39896 * 109.47110 * 299.99933 * 26 24 10 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08997 * 110.40838 * 23.77847 * 12 10 9 33 33 H 1.09000 * 110.40466 * 146.09722 * 12 10 9 34 34 H 1.09000 * 110.51859 * 237.20177 * 18 16 14 35 35 H 1.08999 * 110.52058 * 359.79887 * 18 16 14 36 36 H 0.97008 * 125.73207 * 179.97438 * 22 20 19 37 37 H 1.09000 * 110.40592 * 158.36951 * 23 13 12 38 38 H 1.08998 * 110.40658 * 280.80093 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9658 -3.5726 0.5838 12 6 2.4038 -4.0692 -1.4605 13 7 1.3094 -4.9843 -1.8601 14 6 0.6911 -5.0615 -3.0552 15 8 -0.1956 -5.8707 -3.2280 16 6 1.1014 -4.1422 -4.1766 17 1 1.2886 -3.1375 -3.7976 18 6 2.3487 -4.6901 -4.8967 19 8 1.8965 -4.9148 -6.2635 20 6 0.6084 -4.5704 -6.3694 21 8 -0.0187 -4.6593 -7.4065 22 7 0.0706 -4.1159 -5.2255 23 6 1.0486 -5.7951 -0.6479 24 6 1.1644 -4.7947 0.5223 25 1 0.1805 -4.4099 0.7900 26 6 1.8226 -5.4637 1.7307 27 9 2.0109 -4.5164 2.7428 28 9 0.9984 -6.4917 2.2009 29 9 3.0604 -5.9949 1.3529 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 2.4241 -3.1944 -2.1105 33 1 3.3632 -4.5857 -1.4895 34 1 3.1546 -3.9566 -4.8766 35 1 2.6731 -5.6255 -4.4407 36 1 -0.8459 -3.8202 -5.1086 37 1 0.0466 -6.2225 -0.6849 38 1 1.7954 -6.5830 -0.5498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099244694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:42 Heat of formation + Delta-G solvation = -252.109795 kcal Electronic energy + Delta-G solvation = -30668.671973 eV Core-core repulsion = 25710.451530 eV Total energy + Delta-G solvation = -4958.220443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.08963 -48.56905 -48.54224 -42.90665 -40.97958 -39.06078 -38.34263 -35.86025 -35.75580 -33.69161 -32.36044 -30.79971 -29.12296 -27.24433 -26.05708 -25.18991 -23.64976 -23.54959 -21.73468 -20.96051 -19.59553 -19.46468 -19.29315 -19.22959 -18.74536 -18.29348 -17.84684 -17.58240 -16.72278 -16.69372 -16.18428 -15.73048 -15.58054 -15.45347 -15.32773 -15.24760 -15.11739 -15.00269 -14.91047 -14.80744 -14.67195 -14.57815 -14.46807 -13.57266 -13.46330 -13.27620 -13.03268 -12.89531 -12.63538 -12.50266 -12.21436 -12.06748 -12.00976 -11.93653 -11.72199 -11.55402 -11.06698 -10.42232 -9.98261 -9.01771 -7.92430 -5.22199 1.14724 1.34424 1.52710 1.54748 1.56517 1.63359 1.64549 1.89050 2.49087 2.57043 2.78473 2.83237 2.99543 3.04689 3.20654 3.41387 3.65420 3.69793 3.75219 3.91410 3.99664 4.04836 4.24361 4.38540 4.41360 4.54750 4.57066 4.73755 4.80470 4.97490 5.17624 5.58433 5.61049 6.02920 6.26302 6.32127 6.79465 6.90501 7.36439 8.03592 8.26628 9.30142 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.005043 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.129456 B = 5550.810544 C = 8170.109344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.258 1.258 5 H -0.300 1.300 6 H -0.306 1.306 7 C -0.232 4.232 8 H 0.091 0.909 9 N -0.722 5.722 10 C 0.170 3.830 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.602 5.602 14 C 0.530 3.470 15 O -0.568 6.568 16 C 0.081 3.919 17 H 0.152 0.848 18 C 0.057 3.943 19 O -0.332 6.332 20 C 0.651 3.349 21 O -0.567 6.567 22 N -0.704 5.704 23 C 0.120 3.880 24 C -0.158 4.158 25 H 0.116 0.884 26 C 0.471 3.529 27 F -0.186 7.186 28 F -0.184 7.184 29 F -0.174 7.174 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.127 0.873 36 H 0.443 0.557 37 H 0.089 0.911 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -11.083 -0.520 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.258 4.258 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.228 1.228 6 H -0.234 1.234 7 C -0.363 4.363 8 H 0.108 0.892 9 N -0.362 5.362 10 C 0.059 3.941 11 H 0.101 0.899 12 C -0.050 4.050 13 N -0.334 5.334 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.028 4.028 17 H 0.169 0.831 18 C -0.017 4.017 19 O -0.241 6.241 20 C 0.405 3.595 21 O -0.455 6.455 22 N -0.376 5.376 23 C -0.003 4.003 24 C -0.179 4.179 25 H 0.134 0.866 26 C 0.417 3.583 27 F -0.168 7.168 28 F -0.166 7.166 29 F -0.155 7.155 30 H 0.057 0.943 31 H 0.207 0.793 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.182 0.818 35 H 0.145 0.855 36 H 0.287 0.713 37 H 0.107 0.893 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.744 -11.588 -1.411 14.586 hybrid contribution -0.993 1.268 0.845 1.819 sum 7.751 -10.320 -0.567 12.919 Atomic orbital electron populations 1.69797 1.06647 1.25818 1.59351 1.25401 0.95967 1.00676 1.03724 0.85273 0.78932 0.80734 0.75973 1.18238 1.22754 1.23425 1.19622 0.91825 0.84180 1.40689 0.89153 1.42583 1.05324 1.00165 1.88103 1.21284 0.94063 0.83842 0.94862 0.89878 1.23708 0.89895 0.93906 0.97522 1.48779 1.37055 1.37586 1.09999 1.20399 0.81352 0.83825 0.82718 1.90752 1.32113 1.39589 1.82215 1.22472 0.89411 1.02641 0.88304 0.83094 1.24714 0.95089 1.06158 0.75744 1.87248 1.24063 1.79722 1.33111 1.18557 0.81016 0.75772 0.84194 1.91034 1.62290 1.60775 1.31431 1.45764 1.15727 1.67854 1.08205 1.22243 1.04361 0.92510 0.81219 1.23703 1.02893 0.98547 0.92773 0.86571 1.20123 0.76982 0.76525 0.84718 1.93219 1.95307 1.64898 1.63358 1.93188 1.72305 1.60983 1.90079 1.93173 1.44339 1.86987 1.91026 0.94301 0.79344 0.88267 0.86545 0.81835 0.85538 0.71330 0.89287 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -52.49 13.06 21.65 0.28 -52.21 16 2 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 3 Si 0.96 40.51 29.55 68.60 2.03 42.54 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.31 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.23 -10.17 9.97 84.04 0.84 -9.33 16 8 H 0.09 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.72 -27.50 5.14 -318.63 -1.64 -29.14 16 10 C 0.17 4.47 2.99 45.90 0.14 4.61 16 11 H 0.08 2.18 7.37 -2.39 -0.02 2.17 16 12 C 0.07 1.39 6.63 86.54 0.57 1.97 16 13 N -0.60 -12.57 3.32 -807.94 -2.68 -15.25 16 14 C 0.53 12.77 7.03 87.66 0.62 13.39 16 15 O -0.57 -18.29 16.84 -3.02 -0.05 -18.34 16 16 C 0.08 1.56 3.56 44.50 0.16 1.72 16 17 H 0.15 2.52 7.06 -2.39 -0.02 2.51 16 18 C 0.06 0.79 7.87 72.35 0.57 1.36 16 19 O -0.33 -7.91 11.09 -47.24 -0.52 -8.43 16 20 C 0.65 19.06 9.16 129.86 1.19 20.25 16 21 O -0.57 -21.28 18.04 19.63 0.35 -20.93 16 22 N -0.70 -17.18 5.66 -572.80 -3.24 -20.42 16 23 C 0.12 2.43 6.38 86.53 0.55 2.98 16 24 C -0.16 -3.70 2.84 -9.88 -0.03 -3.72 16 25 H 0.12 3.12 7.64 -2.39 -0.02 3.10 16 26 C 0.47 10.80 2.53 71.98 0.18 10.98 16 27 F -0.19 -5.25 16.93 44.97 0.76 -4.49 16 28 F -0.18 -4.21 17.17 44.97 0.77 -3.44 16 29 F -0.17 -3.51 16.05 44.97 0.72 -2.79 16 30 H 0.25 13.45 8.31 -92.70 -0.77 12.68 16 31 H 0.37 16.34 7.50 -92.71 -0.70 15.65 16 32 H 0.10 1.92 6.69 -2.39 -0.02 1.91 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.13 1.35 7.72 -2.39 -0.02 1.33 16 36 H 0.44 10.49 8.96 -92.70 -0.83 9.66 16 37 H 0.09 1.98 7.88 -2.39 -0.02 1.96 16 38 H 0.11 1.72 7.21 -2.39 -0.02 1.70 16 Total: -1.00 -68.88 339.09 1.68 -67.20 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.36 Total: 24.20 kcal Atomic # 6 Polarization: 36.23 SS G_CDS: 5.26 Total: 41.49 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.28 Total: -117.02 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.22 Total: -47.70 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 2.25 Total: -10.72 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -68.88 1.68 -67.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099244694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.905 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds