Wall clock time and date at job start Tue Mar 31 2020 19:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47266 * 269.99683 * 3 2 1 5 5 H 1.48491 * 109.47435 * 29.99822 * 3 2 1 6 6 H 1.48505 * 109.47065 * 150.00165 * 3 2 1 7 7 C 1.38814 * 119.99375 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99394 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00464 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00202 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.30268 * 34.30286 * 10 9 7 12 12 C 1.54385 * 110.34265 * 272.12526 * 10 9 7 13 13 N 1.48142 * 104.62217 * 264.89081 * 12 10 9 14 14 C 1.34773 * 127.83963 * 140.43809 * 13 12 10 15 15 O 1.21282 * 119.99758 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00282 * 359.97229 * 14 13 12 17 17 H 1.09008 * 110.49698 * 38.71635 * 16 14 13 18 18 C 1.54090 * 110.56652 * 275.81480 * 16 14 13 19 19 O 1.45700 * 104.00608 * 241.42161 * 18 16 14 20 20 C 1.33770 * 109.47695 * 0.02562 * 19 18 16 21 21 O 1.21513 * 123.06943 * 180.02562 * 20 19 18 22 22 N 1.33996 * 113.86140 * 359.97438 * 20 19 18 23 23 C 1.48152 * 104.32175 * 320.41404 * 13 12 10 24 24 C 1.54281 * 110.34308 * 156.47696 * 10 9 7 25 25 H 1.09002 * 110.34601 * 0.10876 * 24 10 9 26 26 C 1.53002 * 110.34627 * 237.84910 * 24 10 9 27 27 F 1.39898 * 109.46745 * 59.99990 * 26 24 10 28 28 F 1.39899 * 109.47400 * 179.97438 * 26 24 10 29 29 F 1.39902 * 109.46664 * 299.99972 * 26 24 10 30 30 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99988 * 0.02562 * 9 7 2 32 32 H 1.08995 * 110.40986 * 23.67774 * 12 10 9 33 33 H 1.09004 * 110.40461 * 146.10622 * 12 10 9 34 34 H 1.08994 * 110.52066 * 0.05466 * 18 16 14 35 35 H 1.08998 * 110.51838 * 122.79546 * 18 16 14 36 36 H 0.97002 * 125.56503 * 180.02562 * 22 20 19 37 37 H 1.08996 * 110.40629 * 158.36969 * 23 13 12 38 38 H 1.08997 * 110.40982 * 280.80201 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 2.9784 -3.5617 0.5788 12 6 2.3727 -4.0961 -1.4434 13 7 1.2717 -5.0203 -1.8016 14 6 0.6281 -5.1216 -2.9814 15 8 -0.2600 -5.9359 -3.1197 16 6 1.0117 -4.2230 -4.1287 17 1 2.0925 -4.0845 -4.1601 18 6 0.2918 -2.8652 -4.0170 19 8 -0.5173 -2.7946 -5.2266 20 6 -0.3328 -3.9033 -5.9520 21 8 -0.8905 -4.1018 -7.0132 22 7 0.5239 -4.7745 -5.4021 23 6 1.0391 -5.8085 -0.5689 24 6 1.1773 -4.7840 0.5811 25 1 0.1991 -4.3940 0.8626 26 6 1.8621 -5.4276 1.7885 27 9 2.0715 -4.4596 2.7766 28 9 1.0488 -6.4453 2.2982 29 9 3.0920 -5.9659 1.3948 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.3772 -3.2339 -2.1102 33 1 3.3313 -4.6134 -1.4833 34 1 -0.3425 -2.8408 -3.1310 35 1 1.0150 -2.0501 -3.9930 36 1 0.7808 -5.6294 -5.7818 37 1 0.0374 -6.2380 -0.5758 38 1 1.7894 -6.5931 -0.4722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099244695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:47 Heat of formation + Delta-G solvation = -228.052085 kcal Electronic energy + Delta-G solvation = -30883.775530 eV Core-core repulsion = 25926.598307 eV Total energy + Delta-G solvation = -4957.177222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03868 -47.55338 -47.44989 -41.82707 -39.88492 -37.88677 -37.08870 -34.74026 -34.29805 -32.42041 -30.90569 -29.75095 -27.86965 -26.22646 -24.60045 -24.04568 -22.44002 -22.42463 -20.59398 -19.90900 -18.47078 -18.31007 -18.21270 -18.12706 -17.49237 -16.91793 -16.81892 -16.43524 -15.52068 -15.30020 -15.09452 -14.48071 -14.47447 -14.37659 -14.20972 -14.03609 -13.93027 -13.83742 -13.64625 -13.60718 -13.51252 -13.42460 -13.37259 -12.60483 -12.28956 -12.09341 -11.84107 -11.53601 -11.12494 -11.04221 -11.00018 -10.85706 -10.74077 -10.42310 -10.31150 -10.01368 -9.46636 -9.33779 -8.85883 -7.35919 -6.06576 -3.40659 2.24282 2.30376 2.69041 2.74164 2.93641 3.26269 3.33337 3.35863 3.49778 3.81849 3.87366 3.98409 4.06001 4.19029 4.35869 4.54363 4.67211 4.76351 4.98998 5.06330 5.12680 5.24436 5.26522 5.36165 5.47675 5.52117 5.70838 5.79421 5.85301 5.96196 6.25852 6.60933 7.14883 7.32641 7.42939 7.86094 8.01691 8.07715 9.21371 9.67939 10.03287 11.14087 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.008105 B = 0.005556 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.719815 B = 5038.471184 C = 7911.849062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.001 3.999 3 Si 0.908 3.092 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.260 4.260 8 H 0.075 0.925 9 N -0.709 5.709 10 C 0.178 3.822 11 H 0.080 0.920 12 C 0.066 3.934 13 N -0.607 5.607 14 C 0.529 3.471 15 O -0.528 6.528 16 C 0.084 3.916 17 H 0.126 0.874 18 C 0.060 3.940 19 O -0.320 6.320 20 C 0.652 3.348 21 O -0.524 6.524 22 N -0.712 5.712 23 C 0.118 3.882 24 C -0.167 4.167 25 H 0.130 0.870 26 C 0.464 3.536 27 F -0.172 7.172 28 F -0.187 7.187 29 F -0.184 7.184 30 H 0.260 0.740 31 H 0.387 0.613 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.437 0.563 37 H 0.095 0.905 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -10.727 -0.896 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.197 4.197 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.391 4.391 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.065 3.935 11 H 0.098 0.902 12 C -0.060 4.060 13 N -0.341 5.341 14 C 0.315 3.685 15 O -0.404 6.404 16 C -0.027 4.027 17 H 0.144 0.856 18 C -0.015 4.015 19 O -0.230 6.230 20 C 0.405 3.595 21 O -0.409 6.409 22 N -0.385 5.385 23 C -0.005 4.005 24 C -0.188 4.188 25 H 0.148 0.852 26 C 0.410 3.590 27 F -0.153 7.153 28 F -0.168 7.168 29 F -0.165 7.165 30 H 0.070 0.930 31 H 0.222 0.778 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.281 0.719 37 H 0.113 0.887 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.061 -10.717 -1.578 12.413 hybrid contribution 0.552 0.380 0.455 0.810 sum 6.614 -10.338 -1.123 12.323 Atomic orbital electron populations 1.69641 1.05180 1.26411 1.55570 1.24775 0.95477 0.97888 1.01550 0.86205 0.78802 0.83496 0.77699 1.21411 1.21628 1.20546 1.19167 0.91135 0.83406 1.45347 0.90661 1.42441 1.05754 0.98950 1.87818 1.21028 0.94558 0.85484 0.92422 0.90193 1.23783 0.88497 0.92963 1.00732 1.48779 1.36571 1.38241 1.10470 1.20097 0.81752 0.84223 0.82408 1.90761 1.30239 1.37377 1.82003 1.22241 1.02215 0.93870 0.84328 0.85637 1.24320 0.94995 0.95150 0.87066 1.87324 1.63542 1.38226 1.33892 1.18460 0.78498 0.79025 0.83546 1.91064 1.52538 1.77156 1.20166 1.45667 1.47999 1.23559 1.21252 1.22210 1.03809 0.92689 0.81840 1.23935 1.03657 0.98915 0.92294 0.85157 1.20260 0.77009 0.76494 0.85267 1.93244 1.94955 1.62825 1.64283 1.93179 1.72888 1.61881 1.88858 1.93156 1.45703 1.86914 1.90751 0.92995 0.77759 0.88560 0.90854 0.86371 0.85503 0.71938 0.88676 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.11 13.06 55.49 0.72 -23.38 16 2 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 3 Si 0.91 19.65 29.55 -169.99 -5.02 14.62 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.26 -5.81 9.96 -15.06 -0.15 -5.96 16 8 H 0.08 1.62 7.83 -52.48 -0.41 1.21 16 9 N -0.71 -13.63 5.12 -52.07 -0.27 -13.90 16 10 C 0.18 2.56 2.99 -66.53 -0.20 2.36 16 11 H 0.08 1.19 7.36 -51.93 -0.38 0.80 16 12 C 0.07 0.76 6.46 -2.41 -0.02 0.75 16 13 N -0.61 -7.28 3.32 -169.16 -0.56 -7.84 16 14 C 0.53 6.98 7.02 -10.99 -0.08 6.90 16 15 O -0.53 -8.79 16.87 5.56 0.09 -8.70 16 16 C 0.08 0.92 3.34 -68.19 -0.23 0.69 16 17 H 0.13 0.96 7.59 -51.92 -0.39 0.57 16 18 C 0.06 0.75 7.71 37.73 0.29 1.04 16 19 O -0.32 -5.02 11.09 -37.83 -0.42 -5.44 16 20 C 0.65 10.30 9.16 53.71 0.49 10.79 16 21 O -0.52 -10.00 18.04 -19.12 -0.34 -10.34 16 22 N -0.71 -8.59 5.65 -59.36 -0.34 -8.92 16 23 C 0.12 1.35 6.40 -2.27 -0.01 1.34 16 24 C -0.17 -2.11 2.85 -89.09 -0.25 -2.36 16 25 H 0.13 1.77 7.65 -51.93 -0.40 1.37 16 26 C 0.46 5.85 2.53 37.16 0.09 5.95 16 27 F -0.17 -2.55 16.92 2.25 0.04 -2.51 16 28 F -0.19 -2.32 17.18 2.25 0.04 -2.28 16 29 F -0.18 -2.19 16.05 2.25 0.04 -2.15 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.39 8.24 7.53 -40.82 -0.31 7.94 16 32 H 0.10 1.13 7.01 -51.93 -0.36 0.77 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.66 7.72 -51.93 -0.40 1.26 16 35 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.44 4.40 8.96 -40.82 -0.37 4.03 16 37 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 38 H 0.08 0.84 7.22 -51.93 -0.37 0.46 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.19 339.44 -4.85 -35.03 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.79 Total: 9.28 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -0.16 Total: 21.43 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.44 Total: -54.05 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.67 Total: -24.48 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.19 -4.85 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099244695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.017 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds