Wall clock time and date at job start Tue Mar 31 2020 19:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47266 * 269.99683 * 3 2 1 5 5 H 1.48491 * 109.47435 * 29.99822 * 3 2 1 6 6 H 1.48505 * 109.47065 * 150.00165 * 3 2 1 7 7 C 1.38814 * 119.99375 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99394 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00464 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00202 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.30268 * 34.30286 * 10 9 7 12 12 C 1.54385 * 110.34265 * 272.12526 * 10 9 7 13 13 N 1.48142 * 104.62217 * 264.89081 * 12 10 9 14 14 C 1.34773 * 127.83963 * 140.43809 * 13 12 10 15 15 O 1.21282 * 119.99758 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00282 * 359.97229 * 14 13 12 17 17 H 1.09008 * 110.49698 * 38.71635 * 16 14 13 18 18 C 1.54090 * 110.56652 * 275.81480 * 16 14 13 19 19 O 1.45700 * 104.00608 * 241.42161 * 18 16 14 20 20 C 1.33770 * 109.47695 * 0.02562 * 19 18 16 21 21 O 1.21513 * 123.06943 * 180.02562 * 20 19 18 22 22 N 1.33996 * 113.86140 * 359.97438 * 20 19 18 23 23 C 1.48152 * 104.32175 * 320.41404 * 13 12 10 24 24 C 1.54281 * 110.34308 * 156.47696 * 10 9 7 25 25 H 1.09002 * 110.34601 * 0.10876 * 24 10 9 26 26 C 1.53002 * 110.34627 * 237.84910 * 24 10 9 27 27 F 1.39898 * 109.46745 * 59.99990 * 26 24 10 28 28 F 1.39899 * 109.47400 * 179.97438 * 26 24 10 29 29 F 1.39902 * 109.46664 * 299.99972 * 26 24 10 30 30 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99988 * 0.02562 * 9 7 2 32 32 H 1.08995 * 110.40986 * 23.67774 * 12 10 9 33 33 H 1.09004 * 110.40461 * 146.10622 * 12 10 9 34 34 H 1.08994 * 110.52066 * 0.05466 * 18 16 14 35 35 H 1.08998 * 110.51838 * 122.79546 * 18 16 14 36 36 H 0.97002 * 125.56503 * 180.02562 * 22 20 19 37 37 H 1.08996 * 110.40629 * 158.36969 * 23 13 12 38 38 H 1.08997 * 110.40982 * 280.80201 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 2.9784 -3.5617 0.5788 12 6 2.3727 -4.0961 -1.4434 13 7 1.2717 -5.0203 -1.8016 14 6 0.6281 -5.1216 -2.9814 15 8 -0.2600 -5.9359 -3.1197 16 6 1.0117 -4.2230 -4.1287 17 1 2.0925 -4.0845 -4.1601 18 6 0.2918 -2.8652 -4.0170 19 8 -0.5173 -2.7946 -5.2266 20 6 -0.3328 -3.9033 -5.9520 21 8 -0.8905 -4.1018 -7.0132 22 7 0.5239 -4.7745 -5.4021 23 6 1.0391 -5.8085 -0.5689 24 6 1.1773 -4.7840 0.5811 25 1 0.1991 -4.3940 0.8626 26 6 1.8621 -5.4276 1.7885 27 9 2.0715 -4.4596 2.7766 28 9 1.0488 -6.4453 2.2982 29 9 3.0920 -5.9659 1.3948 30 1 -0.4850 0.8400 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.3772 -3.2339 -2.1102 33 1 3.3313 -4.6134 -1.4833 34 1 -0.3425 -2.8408 -3.1310 35 1 1.0150 -2.0501 -3.9930 36 1 0.7808 -5.6294 -5.7818 37 1 0.0374 -6.2380 -0.5758 38 1 1.7894 -6.5931 -0.4722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099244695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:46 Heat of formation + Delta-G solvation = -251.104194 kcal Electronic energy + Delta-G solvation = -30884.775144 eV Core-core repulsion = 25926.598307 eV Total energy + Delta-G solvation = -4958.176837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.08275 -48.56328 -48.53705 -42.94159 -40.97885 -39.05189 -38.35793 -35.85990 -35.76308 -33.67134 -32.33691 -30.81439 -29.10944 -27.25885 -26.01541 -25.19740 -23.64255 -23.58096 -21.72457 -20.95204 -19.62254 -19.45584 -19.30618 -19.20420 -18.74073 -18.15483 -17.97000 -17.58819 -16.74015 -16.49944 -16.37011 -15.70170 -15.55713 -15.44240 -15.33567 -15.30425 -15.10711 -14.97186 -14.88426 -14.70337 -14.69201 -14.57846 -14.46959 -13.67645 -13.41395 -13.25787 -13.01027 -12.83340 -12.61537 -12.49844 -12.21542 -12.07480 -12.03833 -11.96372 -11.70269 -11.56714 -11.01959 -10.44479 -9.97558 -8.98894 -7.88627 -5.18300 1.20265 1.23227 1.55546 1.57218 1.59354 1.64609 1.65830 1.88633 2.47711 2.59463 2.79870 2.83918 2.98741 3.03886 3.18508 3.44160 3.65657 3.69661 3.75409 3.92689 3.96917 4.05100 4.25167 4.33415 4.47103 4.55535 4.57780 4.74343 4.81242 4.96701 5.17568 5.62444 5.64654 6.01654 6.28987 6.32128 6.79999 6.91305 7.40311 8.06487 8.30346 9.33071 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.008105 B = 0.005556 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.719815 B = 5038.471184 C = 7911.849062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.059 4.059 3 Si 0.957 3.043 4 H -0.286 1.286 5 H -0.311 1.311 6 H -0.270 1.270 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.720 5.720 10 C 0.171 3.829 11 H 0.083 0.917 12 C 0.075 3.925 13 N -0.602 5.602 14 C 0.529 3.471 15 O -0.567 6.567 16 C 0.093 3.907 17 H 0.174 0.826 18 C 0.058 3.942 19 O -0.340 6.340 20 C 0.649 3.351 21 O -0.566 6.566 22 N -0.695 5.695 23 C 0.120 3.880 24 C -0.159 4.159 25 H 0.118 0.882 26 C 0.471 3.529 27 F -0.186 7.186 28 F -0.184 7.184 29 F -0.175 7.175 30 H 0.248 0.752 31 H 0.375 0.625 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.448 0.552 37 H 0.089 0.911 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.667 -11.949 -0.938 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.253 4.253 3 Si 0.788 3.212 4 H -0.214 1.214 5 H -0.239 1.239 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.106 0.894 9 N -0.359 5.359 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.050 4.050 13 N -0.335 5.335 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.016 4.016 17 H 0.191 0.809 18 C -0.017 4.017 19 O -0.249 6.249 20 C 0.402 3.598 21 O -0.454 6.454 22 N -0.367 5.367 23 C -0.003 4.003 24 C -0.180 4.180 25 H 0.136 0.864 26 C 0.416 3.584 27 F -0.168 7.168 28 F -0.166 7.166 29 F -0.156 7.156 30 H 0.057 0.943 31 H 0.208 0.792 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.293 0.707 37 H 0.107 0.893 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.833 -11.994 -1.589 14.980 hybrid contribution -0.219 0.650 0.595 0.908 sum 8.614 -11.344 -0.993 14.279 Atomic orbital electron populations 1.69777 1.06449 1.25821 1.59051 1.25327 0.95887 1.00366 1.03670 0.85400 0.77827 0.80670 0.77329 1.21355 1.23876 1.19521 1.19530 0.91699 0.84129 1.41024 0.89394 1.42546 1.05317 0.99995 1.88071 1.21259 0.94268 0.84005 0.94459 0.89892 1.23697 0.89640 0.93565 0.98082 1.48774 1.36385 1.38024 1.10272 1.20408 0.81035 0.83899 0.83026 1.90757 1.31836 1.39221 1.82715 1.22434 1.04398 0.92030 0.82755 0.80900 1.24467 0.94882 0.96981 0.85331 1.87295 1.64376 1.38433 1.34803 1.18584 0.78603 0.79384 0.83244 1.91024 1.54238 1.78056 1.22071 1.45568 1.46610 1.23352 1.21178 1.22278 1.04419 0.92623 0.80965 1.23779 1.02728 0.98735 0.92782 0.86421 1.20140 0.77231 0.76269 0.84736 1.93220 1.95060 1.63542 1.64949 1.93187 1.72897 1.61677 1.88823 1.93174 1.45141 1.86720 1.90582 0.94321 0.79209 0.88134 0.86988 0.88265 0.83271 0.70678 0.89259 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -51.11 13.06 21.65 0.28 -50.82 16 2 C -0.06 -2.84 5.50 84.86 0.47 -2.38 16 3 Si 0.96 40.13 29.55 68.60 2.03 42.15 16 4 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.31 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.23 -9.96 9.96 84.03 0.84 -9.13 16 8 H 0.09 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.72 -26.57 5.12 -318.66 -1.63 -28.21 16 10 C 0.17 4.42 2.99 45.90 0.14 4.56 16 11 H 0.08 2.17 7.36 -2.39 -0.02 2.15 16 12 C 0.07 1.40 6.46 86.53 0.56 1.96 16 13 N -0.60 -12.51 3.32 -807.49 -2.68 -15.19 16 14 C 0.53 12.64 7.02 87.66 0.62 13.25 16 15 O -0.57 -18.09 16.87 -3.04 -0.05 -18.14 16 16 C 0.09 1.76 3.34 44.50 0.15 1.91 16 17 H 0.17 1.72 7.59 -2.38 -0.02 1.71 16 18 C 0.06 1.36 7.71 72.35 0.56 1.92 16 19 O -0.34 -10.49 11.09 -47.30 -0.52 -11.01 16 20 C 0.65 20.13 9.16 129.91 1.19 21.32 16 21 O -0.57 -21.76 18.04 19.64 0.35 -21.40 16 22 N -0.69 -15.38 5.65 -573.42 -3.24 -18.63 16 23 C 0.12 2.43 6.40 86.62 0.55 2.98 16 24 C -0.16 -3.69 2.85 -9.80 -0.03 -3.71 16 25 H 0.12 3.11 7.65 -2.39 -0.02 3.09 16 26 C 0.47 10.80 2.53 71.98 0.18 10.98 16 27 F -0.19 -5.24 16.92 44.97 0.76 -4.48 16 28 F -0.18 -4.23 17.18 44.97 0.77 -3.45 16 29 F -0.17 -3.57 16.05 44.97 0.72 -2.84 16 30 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.38 15.86 7.53 -92.71 -0.70 15.16 16 32 H 0.10 1.89 7.01 -2.39 -0.02 1.87 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.74 7.72 -2.39 -0.02 2.73 16 35 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.45 8.05 8.96 -92.71 -0.83 7.22 16 37 H 0.09 1.98 7.88 -2.39 -0.02 1.96 16 38 H 0.11 1.72 7.22 -2.39 -0.02 1.70 16 Total: -1.00 -66.61 339.44 1.65 -64.96 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.37 Total: 23.40 kcal Atomic # 6 Polarization: 38.45 SS G_CDS: 5.22 Total: 43.67 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -7.27 Total: -112.85 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.22 Total: -50.55 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 2.26 Total: -10.78 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Total: -66.61 1.65 -64.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099244695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.144 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds